Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3F1F:A2023:A2027
Extra
PDB:
ATOM 1 O3' U A2022 -49.572 116.710 191.173 1.00 55.74 O
ATOM 2 P G A2023 -50.257 117.317 189.841 1.00 66.57 P
ATOM 3 OP1 G A2023 -51.563 117.905 190.214 1.00 66.13 O
ATOM 4 OP2 G A2023 -50.210 116.292 188.773 1.00 58.08 O
ATOM 5 O5' G A2023 -49.279 118.523 189.448 1.00 54.61 O
ATOM 6 C5' G A2023 -49.265 119.660 190.308 1.00 63.76 C
ATOM 7 C4' G A2023 -47.871 120.127 190.706 1.00 62.02 C
ATOM 8 O4' G A2023 -46.966 119.027 190.987 1.00 68.81 O
ATOM 9 C3' G A2023 -47.156 120.920 189.638 1.00 51.43 C
ATOM 10 O3' G A2023 -47.660 122.225 189.720 1.00 46.37 O
ATOM 11 C2' G A2023 -45.719 120.838 190.124 1.00 59.74 C
ATOM 12 O2' G A2023 -45.524 121.741 191.194 1.00 64.79 O
ATOM 13 C1' G A2023 -45.639 119.404 190.650 1.00 60.34 C
ATOM 14 N9 G A2023 -45.117 118.373 189.751 1.00 52.10 N
ATOM 15 C8 G A2023 -45.855 117.343 189.229 1.00 60.83 C
ATOM 16 N7 G A2023 -45.182 116.535 188.466 1.00 62.13 N
ATOM 17 C5 G A2023 -43.900 117.058 188.487 1.00 59.26 C
ATOM 18 C6 G A2023 -42.733 116.587 187.836 1.00 63.72 C
ATOM 19 O6 G A2023 -42.613 115.591 187.099 1.00 69.31 O
ATOM 20 N1 G A2023 -41.632 117.397 188.112 1.00 63.23 N
ATOM 21 C2 G A2023 -41.659 118.512 188.914 1.00 64.17 C
ATOM 22 N2 G A2023 -40.488 119.157 189.055 1.00 60.63 N
ATOM 23 N3 G A2023 -42.752 118.955 189.529 1.00 64.10 N
ATOM 24 C4 G A2023 -43.836 118.184 189.277 1.00 54.80 C
ATOM 25 P A A2024 -48.320 122.798 188.389 1.00 58.53 P
ATOM 26 OP1 A A2024 -48.424 124.278 188.504 1.00 51.69 O
ATOM 27 OP2 A A2024 -49.502 121.972 188.050 1.00 54.09 O
ATOM 28 O5' A A2024 -47.167 122.434 187.344 1.00 52.74 O
TER
ATOM 1 O3' G B2026 -39.063 114.711 185.462 1.00 56.89 O
ATOM 2 P A B2027 -39.337 114.808 187.044 1.00 62.53 P
ATOM 3 OP1 A B2027 -40.486 113.941 187.416 1.00 59.35 O
ATOM 4 OP2 A B2027 -39.277 116.228 187.442 1.00 55.75 O
ATOM 5 O5' A B2027 -38.001 114.164 187.615 1.00 49.32 O
ATOM 6 C5' A B2027 -36.851 114.984 187.701 1.00 54.11 C
ATOM 7 C4' A B2027 -36.485 115.200 189.161 1.00 59.08 C
ATOM 8 O4' A B2027 -37.415 116.119 189.796 1.00 51.87 O
ATOM 9 C3' A B2027 -36.524 113.939 190.024 1.00 55.65 C
ATOM 10 O3' A B2027 -35.526 113.999 191.042 1.00 51.78 O
ATOM 11 C2' A B2027 -37.905 114.047 190.642 1.00 63.19 C
ATOM 12 O2' A B2027 -38.041 113.247 191.799 1.00 74.18 O
ATOM 13 C1' A B2027 -37.826 115.517 191.002 1.00 55.79 C
ATOM 14 N9 A B2027 -39.102 116.093 191.359 1.00 62.73 N
ATOM 15 C8 A B2027 -40.319 115.754 190.843 1.00 71.06 C
ATOM 16 N7 A B2027 -41.303 116.454 191.354 1.00 69.06 N
ATOM 17 C5 A B2027 -40.677 117.299 192.253 1.00 61.59 C
ATOM 18 C6 A B2027 -41.172 118.287 193.105 1.00 62.70 C
ATOM 19 N6 A B2027 -42.469 118.575 193.174 1.00 78.47 N
ATOM 20 N1 A B2027 -40.289 118.958 193.870 1.00 65.71 N
ATOM 21 C2 A B2027 -38.990 118.649 193.785 1.00 65.05 C
ATOM 22 N3 A B2027 -38.401 117.735 193.020 1.00 72.59 N
ATOM 23 C4 A B2027 -39.316 117.094 192.273 1.00 67.25 C
ATOM 24 P U B2028 -33.978 113.988 190.635 1.00 31.70 P
ATOM 25 OP1 U B2028 -33.633 115.329 190.070 1.00 39.30 O
ATOM 26 OP2 U B2028 -33.732 112.752 189.838 1.00 45.81 O
ATOM 27 O5' U B2028 -33.272 113.789 192.063 1.00 47.83 O
TER
ATOM 2 P G A2023 -50.257 117.317 189.841 1.00 66.57 P
ATOM 3 OP1 G A2023 -51.563 117.905 190.214 1.00 66.13 O
ATOM 4 OP2 G A2023 -50.210 116.292 188.773 1.00 58.08 O
ATOM 5 O5' G A2023 -49.279 118.523 189.448 1.00 54.61 O
ATOM 6 C5' G A2023 -49.265 119.660 190.308 1.00 63.76 C
ATOM 7 C4' G A2023 -47.871 120.127 190.706 1.00 62.02 C
ATOM 8 O4' G A2023 -46.966 119.027 190.987 1.00 68.81 O
ATOM 9 C3' G A2023 -47.156 120.920 189.638 1.00 51.43 C
ATOM 10 O3' G A2023 -47.660 122.225 189.720 1.00 46.37 O
ATOM 11 C2' G A2023 -45.719 120.838 190.124 1.00 59.74 C
ATOM 12 O2' G A2023 -45.524 121.741 191.194 1.00 64.79 O
ATOM 13 C1' G A2023 -45.639 119.404 190.650 1.00 60.34 C
ATOM 14 N9 G A2023 -45.117 118.373 189.751 1.00 52.10 N
ATOM 15 C8 G A2023 -45.855 117.343 189.229 1.00 60.83 C
ATOM 16 N7 G A2023 -45.182 116.535 188.466 1.00 62.13 N
ATOM 17 C5 G A2023 -43.900 117.058 188.487 1.00 59.26 C
ATOM 18 C6 G A2023 -42.733 116.587 187.836 1.00 63.72 C
ATOM 19 O6 G A2023 -42.613 115.591 187.099 1.00 69.31 O
ATOM 20 N1 G A2023 -41.632 117.397 188.112 1.00 63.23 N
ATOM 21 C2 G A2023 -41.659 118.512 188.914 1.00 64.17 C
ATOM 22 N2 G A2023 -40.488 119.157 189.055 1.00 60.63 N
ATOM 23 N3 G A2023 -42.752 118.955 189.529 1.00 64.10 N
ATOM 24 C4 G A2023 -43.836 118.184 189.277 1.00 54.80 C
ATOM 25 P A A2024 -48.320 122.798 188.389 1.00 58.53 P
ATOM 26 OP1 A A2024 -48.424 124.278 188.504 1.00 51.69 O
ATOM 27 OP2 A A2024 -49.502 121.972 188.050 1.00 54.09 O
ATOM 28 O5' A A2024 -47.167 122.434 187.344 1.00 52.74 O
TER
ATOM 1 O3' G B2026 -39.063 114.711 185.462 1.00 56.89 O
ATOM 2 P A B2027 -39.337 114.808 187.044 1.00 62.53 P
ATOM 3 OP1 A B2027 -40.486 113.941 187.416 1.00 59.35 O
ATOM 4 OP2 A B2027 -39.277 116.228 187.442 1.00 55.75 O
ATOM 5 O5' A B2027 -38.001 114.164 187.615 1.00 49.32 O
ATOM 6 C5' A B2027 -36.851 114.984 187.701 1.00 54.11 C
ATOM 7 C4' A B2027 -36.485 115.200 189.161 1.00 59.08 C
ATOM 8 O4' A B2027 -37.415 116.119 189.796 1.00 51.87 O
ATOM 9 C3' A B2027 -36.524 113.939 190.024 1.00 55.65 C
ATOM 10 O3' A B2027 -35.526 113.999 191.042 1.00 51.78 O
ATOM 11 C2' A B2027 -37.905 114.047 190.642 1.00 63.19 C
ATOM 12 O2' A B2027 -38.041 113.247 191.799 1.00 74.18 O
ATOM 13 C1' A B2027 -37.826 115.517 191.002 1.00 55.79 C
ATOM 14 N9 A B2027 -39.102 116.093 191.359 1.00 62.73 N
ATOM 15 C8 A B2027 -40.319 115.754 190.843 1.00 71.06 C
ATOM 16 N7 A B2027 -41.303 116.454 191.354 1.00 69.06 N
ATOM 17 C5 A B2027 -40.677 117.299 192.253 1.00 61.59 C
ATOM 18 C6 A B2027 -41.172 118.287 193.105 1.00 62.70 C
ATOM 19 N6 A B2027 -42.469 118.575 193.174 1.00 78.47 N
ATOM 20 N1 A B2027 -40.289 118.958 193.870 1.00 65.71 N
ATOM 21 C2 A B2027 -38.990 118.649 193.785 1.00 65.05 C
ATOM 22 N3 A B2027 -38.401 117.735 193.020 1.00 72.59 N
ATOM 23 C4 A B2027 -39.316 117.094 192.273 1.00 67.25 C
ATOM 24 P U B2028 -33.978 113.988 190.635 1.00 31.70 P
ATOM 25 OP1 U B2028 -33.633 115.329 190.070 1.00 39.30 O
ATOM 26 OP2 U B2028 -33.732 112.752 189.838 1.00 45.81 O
ATOM 27 O5' U B2028 -33.272 113.789 192.063 1.00 47.83 O
TER
Atoms:
OP1: (-51.563,117.905,190.214)
OP2: (-50.210,116.292,188.773)
C3': (-47.156,120.920,189.638)
C1': (-45.639,119.404,190.650)
C5': (-49.265,119.660,190.308)
O6: (-42.613,115.591,187.099)
O4': (-46.966,119.027,190.987)
C8: (-45.855,117.343,189.229)
C2: (-41.659,118.512,188.914)
C6: (-42.733,116.587,187.836)
C5: (-43.900,117.058,188.487)
C4: (-43.836,118.184,189.277)
P: (-50.257,117.317,189.841)
C4': (-47.871,120.127,190.706)
C2': (-45.719,120.838,190.124)
O2': (-45.524,121.741,191.194)
N1: (-41.632,117.397,188.112)
N2: (-40.488,119.157,189.055)
N3: (-42.752,118.955,189.529)
N7: (-45.182,116.535,188.466)
N9: (-45.117,118.373,189.751)
O5': (-49.279,118.523,189.448)
O3': (-47.660,122.225,189.720)
OP2: (-50.210,116.292,188.773)
C3': (-47.156,120.920,189.638)
C1': (-45.639,119.404,190.650)
C5': (-49.265,119.660,190.308)
O6: (-42.613,115.591,187.099)
O4': (-46.966,119.027,190.987)
C8: (-45.855,117.343,189.229)
C2: (-41.659,118.512,188.914)
C6: (-42.733,116.587,187.836)
C5: (-43.900,117.058,188.487)
C4: (-43.836,118.184,189.277)
P: (-50.257,117.317,189.841)
C4': (-47.871,120.127,190.706)
C2': (-45.719,120.838,190.124)
O2': (-45.524,121.741,191.194)
N1: (-41.632,117.397,188.112)
N2: (-40.488,119.157,189.055)
N3: (-42.752,118.955,189.529)
N7: (-45.182,116.535,188.466)
N9: (-45.117,118.373,189.751)
O5': (-49.279,118.523,189.448)
O3': (-47.660,122.225,189.720)
OP1: (-40.486,113.941,187.416)
OP2: (-39.277,116.228,187.442)
C3': (-36.524,113.939,190.024)
C1': (-37.826,115.517,191.002)
C5': (-36.851,114.984,187.701)
O4': (-37.415,116.119,189.796)
C8: (-40.319,115.754,190.843)
O2': (-38.041,113.247,191.799)
C6: (-41.172,118.287,193.105)
C5: (-40.677,117.299,192.253)
C4: (-39.316,117.094,192.273)
P: (-39.337,114.808,187.044)
C4': (-36.485,115.200,189.161)
C2': (-37.905,114.047,190.642)
C2: (-38.990,118.649,193.785)
N1: (-40.289,118.958,193.870)
N3: (-38.401,117.735,193.020)
N6: (-42.469,118.575,193.174)
N7: (-41.303,116.454,191.354)
N9: (-39.102,116.093,191.359)
O5': (-38.001,114.164,187.615)
O3': (-35.526,113.999,191.042)
OP2: (-39.277,116.228,187.442)
C3': (-36.524,113.939,190.024)
C1': (-37.826,115.517,191.002)
C5': (-36.851,114.984,187.701)
O4': (-37.415,116.119,189.796)
C8: (-40.319,115.754,190.843)
O2': (-38.041,113.247,191.799)
C6: (-41.172,118.287,193.105)
C5: (-40.677,117.299,192.253)
C4: (-39.316,117.094,192.273)
P: (-39.337,114.808,187.044)
C4': (-36.485,115.200,189.161)
C2': (-37.905,114.047,190.642)
C2: (-38.990,118.649,193.785)
N1: (-40.289,118.958,193.870)
N3: (-38.401,117.735,193.020)
N6: (-42.469,118.575,193.174)
N7: (-41.303,116.454,191.354)
N9: (-39.102,116.093,191.359)
O5': (-38.001,114.164,187.615)
O3': (-35.526,113.999,191.042)
Image (generated by PyMOL):