Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQ7:0580:0553
Extra
PDB:
ATOM 1 O3' A A 579 -6.643 103.461 106.064 1.00 68.27 O
ATOM 2 P G A 580 -6.595 103.895 104.519 1.00 67.88 P
ATOM 3 OP1 G A 580 -6.170 105.318 104.497 1.00 66.50 O
ATOM 4 OP2 G A 580 -7.876 103.494 103.877 1.00 67.70 O
ATOM 5 O5' G A 580 -5.453 102.979 103.884 1.00 67.45 O
ATOM 6 C5' G A 580 -4.063 103.159 104.230 1.00 63.70 C
ATOM 7 C4' G A 580 -3.207 102.156 103.487 1.00 62.95 C
ATOM 8 O4' G A 580 -3.559 100.811 103.903 1.00 61.78 O
ATOM 9 C3' G A 580 -3.380 102.128 101.977 1.00 62.41 C
ATOM 10 O3' G A 580 -2.590 103.119 101.347 1.00 64.32 O
ATOM 11 C2' G A 580 -2.888 100.732 101.620 1.00 61.93 C
ATOM 12 O2' G A 580 -1.481 100.630 101.557 1.00 63.39 O
ATOM 13 C1' G A 580 -3.402 99.917 102.809 1.00 61.02 C
ATOM 14 N9 G A 580 -4.691 99.296 102.528 1.00 59.59 N
ATOM 15 C8 G A 580 -5.937 99.842 102.735 1.00 59.93 C
ATOM 16 N7 G A 580 -6.908 99.060 102.350 1.00 59.52 N
ATOM 17 C5 G A 580 -6.267 97.926 101.871 1.00 57.46 C
ATOM 18 C6 G A 580 -6.801 96.745 101.317 1.00 57.71 C
ATOM 19 O6 G A 580 -7.987 96.446 101.140 1.00 61.44 O
ATOM 20 N1 G A 580 -5.802 95.855 100.947 1.00 57.05 N
ATOM 21 C2 G A 580 -4.459 96.072 101.094 1.00 57.25 C
ATOM 22 N2 G A 580 -3.657 95.088 100.661 1.00 55.59 N
ATOM 23 N3 G A 580 -3.942 97.172 101.620 1.00 57.07 N
ATOM 24 C4 G A 580 -4.899 98.052 101.980 1.00 57.83 C
ATOM 25 P A A 581 -3.287 104.423 100.721 1.00 67.35 P
ATOM 26 OP1 A A 581 -3.353 105.456 101.791 1.00 64.72 O
ATOM 27 OP2 A A 581 -4.522 104.033 100.000 1.00 67.39 O
ATOM 28 O5' A A 581 -2.237 104.906 99.625 1.00 70.42 O
TER
ATOM 1 O3' G B 552 -6.278 94.320 96.447 1.00 62.35 O
ATOM 2 P A B 553 -5.712 93.461 97.681 1.00 61.12 P
ATOM 3 OP1 A B 553 -6.280 92.101 97.564 1.00 60.74 O
ATOM 4 OP2 A B 553 -5.864 94.219 98.950 1.00 59.32 O
ATOM 5 O5' A B 553 -4.161 93.328 97.343 1.00 62.60 O
ATOM 6 C5' A B 553 -3.730 92.616 96.162 1.00 60.97 C
ATOM 7 C4' A B 553 -2.228 92.698 96.005 1.00 59.04 C
ATOM 8 O4' A B 553 -1.821 94.028 95.593 1.00 57.41 O
ATOM 9 C3' A B 553 -1.412 92.437 97.259 1.00 56.52 C
ATOM 10 O3' A B 553 -1.297 91.045 97.502 1.00 55.17 O
ATOM 11 C2' A B 553 -0.078 93.078 96.904 1.00 54.81 C
ATOM 12 O2' A B 553 0.681 92.258 96.037 1.00 52.42 O
ATOM 13 C1' A B 553 -0.541 94.317 96.133 1.00 54.21 C
ATOM 14 N9 A B 553 -0.654 95.524 96.951 1.00 52.36 N
ATOM 15 C8 A B 553 -1.793 96.074 97.481 1.00 51.98 C
ATOM 16 N7 A B 553 -1.587 97.192 98.133 1.00 52.15 N
ATOM 17 C5 A B 553 -0.217 97.388 98.035 1.00 51.68 C
ATOM 18 C6 A B 553 0.630 98.408 98.506 1.00 52.23 C
ATOM 19 N6 A B 553 0.203 99.473 99.191 1.00 52.00 N
ATOM 20 N1 A B 553 1.948 98.299 98.242 1.00 51.78 N
ATOM 21 C2 A B 553 2.376 97.235 97.548 1.00 52.11 C
ATOM 22 N3 A B 553 1.681 96.220 97.046 1.00 51.61 N
ATOM 23 C4 A B 553 0.373 96.358 97.325 1.00 52.38 C
ATOM 24 P A B 554 -1.443 90.487 98.999 1.00 55.23 P
ATOM 25 OP1 A B 554 -1.574 89.005 98.873 1.00 52.76 O
ATOM 26 OP2 A B 554 -2.491 91.278 99.699 1.00 53.06 O
ATOM 27 O5' A B 554 -0.046 90.822 99.697 1.00 56.86 O
TER
ATOM 2 P G A 580 -6.595 103.895 104.519 1.00 67.88 P
ATOM 3 OP1 G A 580 -6.170 105.318 104.497 1.00 66.50 O
ATOM 4 OP2 G A 580 -7.876 103.494 103.877 1.00 67.70 O
ATOM 5 O5' G A 580 -5.453 102.979 103.884 1.00 67.45 O
ATOM 6 C5' G A 580 -4.063 103.159 104.230 1.00 63.70 C
ATOM 7 C4' G A 580 -3.207 102.156 103.487 1.00 62.95 C
ATOM 8 O4' G A 580 -3.559 100.811 103.903 1.00 61.78 O
ATOM 9 C3' G A 580 -3.380 102.128 101.977 1.00 62.41 C
ATOM 10 O3' G A 580 -2.590 103.119 101.347 1.00 64.32 O
ATOM 11 C2' G A 580 -2.888 100.732 101.620 1.00 61.93 C
ATOM 12 O2' G A 580 -1.481 100.630 101.557 1.00 63.39 O
ATOM 13 C1' G A 580 -3.402 99.917 102.809 1.00 61.02 C
ATOM 14 N9 G A 580 -4.691 99.296 102.528 1.00 59.59 N
ATOM 15 C8 G A 580 -5.937 99.842 102.735 1.00 59.93 C
ATOM 16 N7 G A 580 -6.908 99.060 102.350 1.00 59.52 N
ATOM 17 C5 G A 580 -6.267 97.926 101.871 1.00 57.46 C
ATOM 18 C6 G A 580 -6.801 96.745 101.317 1.00 57.71 C
ATOM 19 O6 G A 580 -7.987 96.446 101.140 1.00 61.44 O
ATOM 20 N1 G A 580 -5.802 95.855 100.947 1.00 57.05 N
ATOM 21 C2 G A 580 -4.459 96.072 101.094 1.00 57.25 C
ATOM 22 N2 G A 580 -3.657 95.088 100.661 1.00 55.59 N
ATOM 23 N3 G A 580 -3.942 97.172 101.620 1.00 57.07 N
ATOM 24 C4 G A 580 -4.899 98.052 101.980 1.00 57.83 C
ATOM 25 P A A 581 -3.287 104.423 100.721 1.00 67.35 P
ATOM 26 OP1 A A 581 -3.353 105.456 101.791 1.00 64.72 O
ATOM 27 OP2 A A 581 -4.522 104.033 100.000 1.00 67.39 O
ATOM 28 O5' A A 581 -2.237 104.906 99.625 1.00 70.42 O
TER
ATOM 1 O3' G B 552 -6.278 94.320 96.447 1.00 62.35 O
ATOM 2 P A B 553 -5.712 93.461 97.681 1.00 61.12 P
ATOM 3 OP1 A B 553 -6.280 92.101 97.564 1.00 60.74 O
ATOM 4 OP2 A B 553 -5.864 94.219 98.950 1.00 59.32 O
ATOM 5 O5' A B 553 -4.161 93.328 97.343 1.00 62.60 O
ATOM 6 C5' A B 553 -3.730 92.616 96.162 1.00 60.97 C
ATOM 7 C4' A B 553 -2.228 92.698 96.005 1.00 59.04 C
ATOM 8 O4' A B 553 -1.821 94.028 95.593 1.00 57.41 O
ATOM 9 C3' A B 553 -1.412 92.437 97.259 1.00 56.52 C
ATOM 10 O3' A B 553 -1.297 91.045 97.502 1.00 55.17 O
ATOM 11 C2' A B 553 -0.078 93.078 96.904 1.00 54.81 C
ATOM 12 O2' A B 553 0.681 92.258 96.037 1.00 52.42 O
ATOM 13 C1' A B 553 -0.541 94.317 96.133 1.00 54.21 C
ATOM 14 N9 A B 553 -0.654 95.524 96.951 1.00 52.36 N
ATOM 15 C8 A B 553 -1.793 96.074 97.481 1.00 51.98 C
ATOM 16 N7 A B 553 -1.587 97.192 98.133 1.00 52.15 N
ATOM 17 C5 A B 553 -0.217 97.388 98.035 1.00 51.68 C
ATOM 18 C6 A B 553 0.630 98.408 98.506 1.00 52.23 C
ATOM 19 N6 A B 553 0.203 99.473 99.191 1.00 52.00 N
ATOM 20 N1 A B 553 1.948 98.299 98.242 1.00 51.78 N
ATOM 21 C2 A B 553 2.376 97.235 97.548 1.00 52.11 C
ATOM 22 N3 A B 553 1.681 96.220 97.046 1.00 51.61 N
ATOM 23 C4 A B 553 0.373 96.358 97.325 1.00 52.38 C
ATOM 24 P A B 554 -1.443 90.487 98.999 1.00 55.23 P
ATOM 25 OP1 A B 554 -1.574 89.005 98.873 1.00 52.76 O
ATOM 26 OP2 A B 554 -2.491 91.278 99.699 1.00 53.06 O
ATOM 27 O5' A B 554 -0.046 90.822 99.697 1.00 56.86 O
TER
Atoms:
OP1: (-6.170,105.318,104.497)
OP2: (-7.876,103.494,103.877)
C3': (-3.380,102.128,101.977)
C1': (-3.402,99.917,102.809)
C5': (-4.063,103.159,104.230)
O6: (-7.987,96.446,101.140)
O4': (-3.559,100.811,103.903)
C8: (-5.937,99.842,102.735)
C2: (-4.459,96.072,101.094)
C6: (-6.801,96.745,101.317)
C5: (-6.267,97.926,101.871)
C4: (-4.899,98.052,101.980)
P: (-6.595,103.895,104.519)
C4': (-3.207,102.156,103.487)
C2': (-2.888,100.732,101.620)
O2': (-1.481,100.630,101.557)
N1: (-5.802,95.855,100.947)
N2: (-3.657,95.088,100.661)
N3: (-3.942,97.172,101.620)
N7: (-6.908,99.060,102.350)
N9: (-4.691,99.296,102.528)
O5': (-5.453,102.979,103.884)
O3': (-2.590,103.119,101.347)
OP2: (-7.876,103.494,103.877)
C3': (-3.380,102.128,101.977)
C1': (-3.402,99.917,102.809)
C5': (-4.063,103.159,104.230)
O6: (-7.987,96.446,101.140)
O4': (-3.559,100.811,103.903)
C8: (-5.937,99.842,102.735)
C2: (-4.459,96.072,101.094)
C6: (-6.801,96.745,101.317)
C5: (-6.267,97.926,101.871)
C4: (-4.899,98.052,101.980)
P: (-6.595,103.895,104.519)
C4': (-3.207,102.156,103.487)
C2': (-2.888,100.732,101.620)
O2': (-1.481,100.630,101.557)
N1: (-5.802,95.855,100.947)
N2: (-3.657,95.088,100.661)
N3: (-3.942,97.172,101.620)
N7: (-6.908,99.060,102.350)
N9: (-4.691,99.296,102.528)
O5': (-5.453,102.979,103.884)
O3': (-2.590,103.119,101.347)
OP1: (-6.280,92.101,97.564)
OP2: (-5.864,94.219,98.950)
C3': (-1.412,92.437,97.259)
C1': (-0.541,94.317,96.133)
C5': (-3.730,92.616,96.162)
O4': (-1.821,94.028,95.593)
C8: (-1.793,96.074,97.481)
O2': (0.681,92.258,96.037)
C6: (0.630,98.408,98.506)
C5: (-0.217,97.388,98.035)
C4: (0.373,96.358,97.325)
P: (-5.712,93.461,97.681)
C4': (-2.228,92.698,96.005)
C2': (-0.078,93.078,96.904)
C2: (2.376,97.235,97.548)
N1: (1.948,98.299,98.242)
N3: (1.681,96.220,97.046)
N6: (0.203,99.473,99.191)
N7: (-1.587,97.192,98.133)
N9: (-0.654,95.524,96.951)
O5': (-4.161,93.328,97.343)
O3': (-1.297,91.045,97.502)
OP2: (-5.864,94.219,98.950)
C3': (-1.412,92.437,97.259)
C1': (-0.541,94.317,96.133)
C5': (-3.730,92.616,96.162)
O4': (-1.821,94.028,95.593)
C8: (-1.793,96.074,97.481)
O2': (0.681,92.258,96.037)
C6: (0.630,98.408,98.506)
C5: (-0.217,97.388,98.035)
C4: (0.373,96.358,97.325)
P: (-5.712,93.461,97.681)
C4': (-2.228,92.698,96.005)
C2': (-0.078,93.078,96.904)
C2: (2.376,97.235,97.548)
N1: (1.948,98.299,98.242)
N3: (1.681,96.220,97.046)
N6: (0.203,99.473,99.191)
N7: (-1.587,97.192,98.133)
N9: (-0.654,95.524,96.951)
O5': (-4.161,93.328,97.343)
O3': (-1.297,91.045,97.502)
Image (generated by PyMOL):