Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12068:12062
Extra
PDB:
ATOM 1 O3' U A2067 -26.402 -8.080 62.119 1.00 79.61 O
ATOM 2 P G A2068 -25.966 -9.475 62.755 1.00 63.23 P
ATOM 3 OP1 G A2068 -24.981 -9.179 63.821 1.00 63.01 O
ATOM 4 OP2 G A2068 -25.565 -10.373 61.624 1.00 63.37 O
ATOM 5 O5' G A2068 -27.326 -10.000 63.398 1.00 63.33 O
ATOM 6 C5' G A2068 -27.740 -9.577 64.696 1.00 63.21 C
ATOM 7 C4' G A2068 -29.079 -10.144 65.049 1.00 63.34 C
ATOM 8 O4' G A2068 -29.872 -10.204 63.847 1.00 63.55 O
ATOM 9 C3' G A2068 -29.056 -11.547 65.641 1.00 63.37 C
ATOM 10 O3' G A2068 -29.852 -11.587 66.799 1.00 63.34 O
ATOM 11 C2' G A2068 -29.694 -12.431 64.576 1.00 63.60 C
ATOM 12 O2' G A2068 -30.530 -13.450 65.089 1.00 63.70 O
ATOM 13 C1' G A2068 -30.491 -11.459 63.722 1.00 63.70 C
ATOM 14 N9 G A2068 -30.484 -11.828 62.310 1.00 63.87 N
ATOM 15 C8 G A2068 -29.412 -11.622 61.489 1.00 63.84 C
ATOM 16 N7 G A2068 -29.597 -12.065 60.286 1.00 64.01 N
ATOM 17 C5 G A2068 -30.863 -12.608 60.317 1.00 64.16 C
ATOM 18 C6 G A2068 -31.587 -13.228 59.280 1.00 64.38 C
ATOM 19 O6 G A2068 -31.208 -13.403 58.120 1.00 64.47 O
ATOM 20 N1 G A2068 -32.836 -13.659 59.698 1.00 64.49 N
ATOM 21 C2 G A2068 -33.333 -13.498 60.957 1.00 64.40 C
ATOM 22 N2 G A2068 -34.570 -13.965 61.162 1.00 64.53 N
ATOM 23 N3 G A2068 -32.659 -12.906 61.937 1.00 64.19 N
ATOM 24 C4 G A2068 -31.434 -12.485 61.558 1.00 64.08 C
ATOM 25 P A A2069 -29.199 -11.968 68.213 1.00 68.28 P
ATOM 26 OP1 A A2069 -28.284 -10.841 68.599 1.00 68.08 O
ATOM 27 OP2 A A2069 -28.632 -13.340 68.100 1.00 68.33 O
ATOM 28 O5' A A2069 -30.479 -11.985 69.168 1.00 68.31 O
TER
ATOM 1 O3' U B2061 -34.954 -17.636 58.342 1.00 84.07 O
ATOM 2 P A B2062 -35.233 -16.178 57.763 1.00 75.81 P
ATOM 3 OP1 A B2062 -35.251 -16.263 56.283 1.00 75.97 O
ATOM 4 OP2 A B2062 -34.261 -15.285 58.409 1.00 75.59 O
ATOM 5 O5' A B2062 -36.689 -15.871 58.291 1.00 75.88 O
ATOM 6 C5' A B2062 -36.904 -15.455 59.617 1.00 75.73 C
ATOM 7 C4' A B2062 -37.980 -14.417 59.686 1.00 75.76 C
ATOM 8 O4' A B2062 -37.804 -13.637 60.882 1.00 75.57 O
ATOM 9 C3' A B2062 -38.001 -13.414 58.542 1.00 75.81 C
ATOM 10 O3' A B2062 -38.835 -13.852 57.490 1.00 76.03 O
ATOM 11 C2' A B2062 -38.512 -12.139 59.193 1.00 75.71 C
ATOM 12 O2' A B2062 -39.938 -12.132 59.223 1.00 75.85 O
ATOM 13 C1' A B2062 -38.000 -12.278 60.622 1.00 75.52 C
ATOM 14 N9 A B2062 -36.721 -11.579 60.855 1.00 75.33 N
ATOM 15 C8 A B2062 -35.677 -11.217 60.044 1.00 75.29 C
ATOM 16 N7 A B2062 -34.703 -10.621 60.703 1.00 75.08 N
ATOM 17 C5 A B2062 -35.155 -10.605 62.025 1.00 74.99 C
ATOM 18 C6 A B2062 -34.635 -10.123 63.248 1.00 74.78 C
ATOM 19 N6 A B2062 -33.457 -9.520 63.357 1.00 74.62 N
ATOM 20 N1 A B2062 -35.367 -10.271 64.381 1.00 74.75 N
ATOM 21 C2 A B2062 -36.564 -10.865 64.310 1.00 74.91 C
ATOM 22 N3 A B2062 -37.149 -11.363 63.230 1.00 75.11 N
ATOM 23 C4 A B2062 -36.390 -11.200 62.122 1.00 75.14 C
ATOM 24 P A B2063 -38.408 -13.698 55.957 1.00119.94 P
ATOM 25 OP1 A B2063 -37.948 -15.028 55.484 1.00120.04 O
ATOM 26 OP2 A B2063 -37.487 -12.556 55.858 1.00119.79 O
ATOM 27 O5' A B2063 -39.782 -13.340 55.294 1.00120.12 O
TER
ATOM 2 P G A2068 -25.966 -9.475 62.755 1.00 63.23 P
ATOM 3 OP1 G A2068 -24.981 -9.179 63.821 1.00 63.01 O
ATOM 4 OP2 G A2068 -25.565 -10.373 61.624 1.00 63.37 O
ATOM 5 O5' G A2068 -27.326 -10.000 63.398 1.00 63.33 O
ATOM 6 C5' G A2068 -27.740 -9.577 64.696 1.00 63.21 C
ATOM 7 C4' G A2068 -29.079 -10.144 65.049 1.00 63.34 C
ATOM 8 O4' G A2068 -29.872 -10.204 63.847 1.00 63.55 O
ATOM 9 C3' G A2068 -29.056 -11.547 65.641 1.00 63.37 C
ATOM 10 O3' G A2068 -29.852 -11.587 66.799 1.00 63.34 O
ATOM 11 C2' G A2068 -29.694 -12.431 64.576 1.00 63.60 C
ATOM 12 O2' G A2068 -30.530 -13.450 65.089 1.00 63.70 O
ATOM 13 C1' G A2068 -30.491 -11.459 63.722 1.00 63.70 C
ATOM 14 N9 G A2068 -30.484 -11.828 62.310 1.00 63.87 N
ATOM 15 C8 G A2068 -29.412 -11.622 61.489 1.00 63.84 C
ATOM 16 N7 G A2068 -29.597 -12.065 60.286 1.00 64.01 N
ATOM 17 C5 G A2068 -30.863 -12.608 60.317 1.00 64.16 C
ATOM 18 C6 G A2068 -31.587 -13.228 59.280 1.00 64.38 C
ATOM 19 O6 G A2068 -31.208 -13.403 58.120 1.00 64.47 O
ATOM 20 N1 G A2068 -32.836 -13.659 59.698 1.00 64.49 N
ATOM 21 C2 G A2068 -33.333 -13.498 60.957 1.00 64.40 C
ATOM 22 N2 G A2068 -34.570 -13.965 61.162 1.00 64.53 N
ATOM 23 N3 G A2068 -32.659 -12.906 61.937 1.00 64.19 N
ATOM 24 C4 G A2068 -31.434 -12.485 61.558 1.00 64.08 C
ATOM 25 P A A2069 -29.199 -11.968 68.213 1.00 68.28 P
ATOM 26 OP1 A A2069 -28.284 -10.841 68.599 1.00 68.08 O
ATOM 27 OP2 A A2069 -28.632 -13.340 68.100 1.00 68.33 O
ATOM 28 O5' A A2069 -30.479 -11.985 69.168 1.00 68.31 O
TER
ATOM 1 O3' U B2061 -34.954 -17.636 58.342 1.00 84.07 O
ATOM 2 P A B2062 -35.233 -16.178 57.763 1.00 75.81 P
ATOM 3 OP1 A B2062 -35.251 -16.263 56.283 1.00 75.97 O
ATOM 4 OP2 A B2062 -34.261 -15.285 58.409 1.00 75.59 O
ATOM 5 O5' A B2062 -36.689 -15.871 58.291 1.00 75.88 O
ATOM 6 C5' A B2062 -36.904 -15.455 59.617 1.00 75.73 C
ATOM 7 C4' A B2062 -37.980 -14.417 59.686 1.00 75.76 C
ATOM 8 O4' A B2062 -37.804 -13.637 60.882 1.00 75.57 O
ATOM 9 C3' A B2062 -38.001 -13.414 58.542 1.00 75.81 C
ATOM 10 O3' A B2062 -38.835 -13.852 57.490 1.00 76.03 O
ATOM 11 C2' A B2062 -38.512 -12.139 59.193 1.00 75.71 C
ATOM 12 O2' A B2062 -39.938 -12.132 59.223 1.00 75.85 O
ATOM 13 C1' A B2062 -38.000 -12.278 60.622 1.00 75.52 C
ATOM 14 N9 A B2062 -36.721 -11.579 60.855 1.00 75.33 N
ATOM 15 C8 A B2062 -35.677 -11.217 60.044 1.00 75.29 C
ATOM 16 N7 A B2062 -34.703 -10.621 60.703 1.00 75.08 N
ATOM 17 C5 A B2062 -35.155 -10.605 62.025 1.00 74.99 C
ATOM 18 C6 A B2062 -34.635 -10.123 63.248 1.00 74.78 C
ATOM 19 N6 A B2062 -33.457 -9.520 63.357 1.00 74.62 N
ATOM 20 N1 A B2062 -35.367 -10.271 64.381 1.00 74.75 N
ATOM 21 C2 A B2062 -36.564 -10.865 64.310 1.00 74.91 C
ATOM 22 N3 A B2062 -37.149 -11.363 63.230 1.00 75.11 N
ATOM 23 C4 A B2062 -36.390 -11.200 62.122 1.00 75.14 C
ATOM 24 P A B2063 -38.408 -13.698 55.957 1.00119.94 P
ATOM 25 OP1 A B2063 -37.948 -15.028 55.484 1.00120.04 O
ATOM 26 OP2 A B2063 -37.487 -12.556 55.858 1.00119.79 O
ATOM 27 O5' A B2063 -39.782 -13.340 55.294 1.00120.12 O
TER
Atoms:
OP1: (-24.981,-9.179,63.821)
OP2: (-25.565,-10.373,61.624)
C3': (-29.056,-11.547,65.641)
C1': (-30.491,-11.459,63.722)
C5': (-27.740,-9.577,64.696)
O6: (-31.208,-13.403,58.120)
O4': (-29.872,-10.204,63.847)
C8: (-29.412,-11.622,61.489)
C2: (-33.333,-13.498,60.957)
C6: (-31.587,-13.228,59.280)
C5: (-30.863,-12.608,60.317)
C4: (-31.434,-12.485,61.558)
P: (-25.966,-9.475,62.755)
C4': (-29.079,-10.144,65.049)
C2': (-29.694,-12.431,64.576)
O2': (-30.530,-13.450,65.089)
N1: (-32.836,-13.659,59.698)
N2: (-34.570,-13.965,61.162)
N3: (-32.659,-12.906,61.937)
N7: (-29.597,-12.065,60.286)
N9: (-30.484,-11.828,62.310)
O5': (-27.326,-10.000,63.398)
O3': (-29.852,-11.587,66.799)
OP2: (-25.565,-10.373,61.624)
C3': (-29.056,-11.547,65.641)
C1': (-30.491,-11.459,63.722)
C5': (-27.740,-9.577,64.696)
O6: (-31.208,-13.403,58.120)
O4': (-29.872,-10.204,63.847)
C8: (-29.412,-11.622,61.489)
C2: (-33.333,-13.498,60.957)
C6: (-31.587,-13.228,59.280)
C5: (-30.863,-12.608,60.317)
C4: (-31.434,-12.485,61.558)
P: (-25.966,-9.475,62.755)
C4': (-29.079,-10.144,65.049)
C2': (-29.694,-12.431,64.576)
O2': (-30.530,-13.450,65.089)
N1: (-32.836,-13.659,59.698)
N2: (-34.570,-13.965,61.162)
N3: (-32.659,-12.906,61.937)
N7: (-29.597,-12.065,60.286)
N9: (-30.484,-11.828,62.310)
O5': (-27.326,-10.000,63.398)
O3': (-29.852,-11.587,66.799)
OP1: (-35.251,-16.263,56.283)
OP2: (-34.261,-15.285,58.409)
C3': (-38.001,-13.414,58.542)
C1': (-38.000,-12.278,60.622)
C5': (-36.904,-15.455,59.617)
O4': (-37.804,-13.637,60.882)
C8: (-35.677,-11.217,60.044)
O2': (-39.938,-12.132,59.223)
C6: (-34.635,-10.123,63.248)
C5: (-35.155,-10.605,62.025)
C4: (-36.390,-11.200,62.122)
P: (-35.233,-16.178,57.763)
C4': (-37.980,-14.417,59.686)
C2': (-38.512,-12.139,59.193)
C2: (-36.564,-10.865,64.310)
N1: (-35.367,-10.271,64.381)
N3: (-37.149,-11.363,63.230)
N6: (-33.457,-9.520,63.357)
N7: (-34.703,-10.621,60.703)
N9: (-36.721,-11.579,60.855)
O5': (-36.689,-15.871,58.291)
O3': (-38.835,-13.852,57.490)
OP2: (-34.261,-15.285,58.409)
C3': (-38.001,-13.414,58.542)
C1': (-38.000,-12.278,60.622)
C5': (-36.904,-15.455,59.617)
O4': (-37.804,-13.637,60.882)
C8: (-35.677,-11.217,60.044)
O2': (-39.938,-12.132,59.223)
C6: (-34.635,-10.123,63.248)
C5: (-35.155,-10.605,62.025)
C4: (-36.390,-11.200,62.122)
P: (-35.233,-16.178,57.763)
C4': (-37.980,-14.417,59.686)
C2': (-38.512,-12.139,59.193)
C2: (-36.564,-10.865,64.310)
N1: (-35.367,-10.271,64.381)
N3: (-37.149,-11.363,63.230)
N6: (-33.457,-9.520,63.357)
N7: (-34.703,-10.621,60.703)
N9: (-36.721,-11.579,60.855)
O5': (-36.689,-15.871,58.291)
O3': (-38.835,-13.852,57.490)
Image (generated by PyMOL):