Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0580:0553
Extra
PDB:
ATOM 1 O3' A A 579 -6.264 103.421 106.118 1.00 58.53 O
ATOM 2 P G A 580 -6.297 103.829 104.564 1.00 59.06 P
ATOM 3 OP1 G A 580 -6.009 105.285 104.510 1.00 57.81 O
ATOM 4 OP2 G A 580 -7.542 103.301 103.939 1.00 58.23 O
ATOM 5 O5' G A 580 -5.072 103.035 103.926 1.00 58.31 O
ATOM 6 C5' G A 580 -3.713 103.349 104.282 1.00 57.49 C
ATOM 7 C4' G A 580 -2.772 102.370 103.629 1.00 57.45 C
ATOM 8 O4' G A 580 -3.074 101.040 104.119 1.00 57.41 O
ATOM 9 C3' G A 580 -2.911 102.252 102.120 1.00 57.28 C
ATOM 10 O3' G A 580 -2.143 103.236 101.447 1.00 58.17 O
ATOM 11 C2' G A 580 -2.382 100.852 101.851 1.00 57.04 C
ATOM 12 O2' G A 580 -0.969 100.790 101.840 1.00 55.62 O
ATOM 13 C1' G A 580 -2.917 100.099 103.069 1.00 57.63 C
ATOM 14 N9 G A 580 -4.209 99.462 102.830 1.00 57.95 N
ATOM 15 C8 G A 580 -5.454 99.964 103.131 1.00 58.87 C
ATOM 16 N7 G A 580 -6.424 99.155 102.802 1.00 60.17 N
ATOM 17 C5 G A 580 -5.781 98.054 102.250 1.00 58.95 C
ATOM 18 C6 G A 580 -6.311 96.850 101.716 1.00 59.22 C
ATOM 19 O6 G A 580 -7.494 96.496 101.631 1.00 60.08 O
ATOM 20 N1 G A 580 -5.304 96.013 101.257 1.00 59.14 N
ATOM 21 C2 G A 580 -3.962 96.288 101.310 1.00 58.87 C
ATOM 22 N2 G A 580 -3.147 95.352 100.814 1.00 59.30 N
ATOM 23 N3 G A 580 -3.455 97.398 101.811 1.00 58.34 N
ATOM 24 C4 G A 580 -4.415 98.231 102.258 1.00 58.07 C
ATOM 25 P A A 581 -2.853 104.572 100.916 1.00 59.14 P
ATOM 26 OP1 A A 581 -2.831 105.520 102.062 1.00 58.57 O
ATOM 27 OP2 A A 581 -4.144 104.233 100.262 1.00 57.84 O
ATOM 28 O5' A A 581 -1.858 105.115 99.798 1.00 58.76 O
TER
ATOM 1 O3' G B 552 -5.796 94.599 96.720 1.00 50.62 O
ATOM 2 P A B 553 -5.260 93.655 97.906 1.00 49.79 P
ATOM 3 OP1 A B 553 -5.848 92.315 97.698 1.00 48.94 O
ATOM 4 OP2 A B 553 -5.426 94.333 99.217 1.00 49.01 O
ATOM 5 O5' A B 553 -3.706 93.526 97.595 1.00 48.49 O
ATOM 6 C5' A B 553 -3.259 92.816 96.431 1.00 48.35 C
ATOM 7 C4' A B 553 -1.763 92.910 96.294 1.00 47.12 C
ATOM 8 O4' A B 553 -1.382 94.252 95.900 1.00 46.45 O
ATOM 9 C3' A B 553 -0.965 92.667 97.560 1.00 46.42 C
ATOM 10 O3' A B 553 -0.839 91.286 97.854 1.00 47.30 O
ATOM 11 C2' A B 553 0.362 93.325 97.219 1.00 45.63 C
ATOM 12 O2' A B 553 1.144 92.511 96.366 1.00 42.85 O
ATOM 13 C1' A B 553 -0.112 94.563 96.452 1.00 45.11 C
ATOM 14 N9 A B 553 -0.257 95.762 97.279 1.00 44.89 N
ATOM 15 C8 A B 553 -1.406 96.243 97.861 1.00 45.97 C
ATOM 16 N7 A B 553 -1.235 97.358 98.531 1.00 47.17 N
ATOM 17 C5 A B 553 0.121 97.630 98.385 1.00 47.33 C
ATOM 18 C6 A B 553 0.936 98.686 98.855 1.00 46.92 C
ATOM 19 N6 A B 553 0.485 99.699 99.596 1.00 48.38 N
ATOM 20 N1 A B 553 2.245 98.661 98.531 1.00 46.01 N
ATOM 21 C2 A B 553 2.697 97.644 97.786 1.00 47.05 C
ATOM 22 N3 A B 553 2.036 96.598 97.284 1.00 45.97 N
ATOM 23 C4 A B 553 0.737 96.651 97.622 1.00 46.24 C
ATOM 24 P A B 554 -1.082 90.771 99.358 1.00 49.80 P
ATOM 25 OP1 A B 554 -1.348 89.306 99.289 1.00 48.95 O
ATOM 26 OP2 A B 554 -2.067 91.673 100.017 1.00 49.84 O
ATOM 27 O5' A B 554 0.315 90.997 100.086 1.00 48.18 O
TER
ATOM 2 P G A 580 -6.297 103.829 104.564 1.00 59.06 P
ATOM 3 OP1 G A 580 -6.009 105.285 104.510 1.00 57.81 O
ATOM 4 OP2 G A 580 -7.542 103.301 103.939 1.00 58.23 O
ATOM 5 O5' G A 580 -5.072 103.035 103.926 1.00 58.31 O
ATOM 6 C5' G A 580 -3.713 103.349 104.282 1.00 57.49 C
ATOM 7 C4' G A 580 -2.772 102.370 103.629 1.00 57.45 C
ATOM 8 O4' G A 580 -3.074 101.040 104.119 1.00 57.41 O
ATOM 9 C3' G A 580 -2.911 102.252 102.120 1.00 57.28 C
ATOM 10 O3' G A 580 -2.143 103.236 101.447 1.00 58.17 O
ATOM 11 C2' G A 580 -2.382 100.852 101.851 1.00 57.04 C
ATOM 12 O2' G A 580 -0.969 100.790 101.840 1.00 55.62 O
ATOM 13 C1' G A 580 -2.917 100.099 103.069 1.00 57.63 C
ATOM 14 N9 G A 580 -4.209 99.462 102.830 1.00 57.95 N
ATOM 15 C8 G A 580 -5.454 99.964 103.131 1.00 58.87 C
ATOM 16 N7 G A 580 -6.424 99.155 102.802 1.00 60.17 N
ATOM 17 C5 G A 580 -5.781 98.054 102.250 1.00 58.95 C
ATOM 18 C6 G A 580 -6.311 96.850 101.716 1.00 59.22 C
ATOM 19 O6 G A 580 -7.494 96.496 101.631 1.00 60.08 O
ATOM 20 N1 G A 580 -5.304 96.013 101.257 1.00 59.14 N
ATOM 21 C2 G A 580 -3.962 96.288 101.310 1.00 58.87 C
ATOM 22 N2 G A 580 -3.147 95.352 100.814 1.00 59.30 N
ATOM 23 N3 G A 580 -3.455 97.398 101.811 1.00 58.34 N
ATOM 24 C4 G A 580 -4.415 98.231 102.258 1.00 58.07 C
ATOM 25 P A A 581 -2.853 104.572 100.916 1.00 59.14 P
ATOM 26 OP1 A A 581 -2.831 105.520 102.062 1.00 58.57 O
ATOM 27 OP2 A A 581 -4.144 104.233 100.262 1.00 57.84 O
ATOM 28 O5' A A 581 -1.858 105.115 99.798 1.00 58.76 O
TER
ATOM 1 O3' G B 552 -5.796 94.599 96.720 1.00 50.62 O
ATOM 2 P A B 553 -5.260 93.655 97.906 1.00 49.79 P
ATOM 3 OP1 A B 553 -5.848 92.315 97.698 1.00 48.94 O
ATOM 4 OP2 A B 553 -5.426 94.333 99.217 1.00 49.01 O
ATOM 5 O5' A B 553 -3.706 93.526 97.595 1.00 48.49 O
ATOM 6 C5' A B 553 -3.259 92.816 96.431 1.00 48.35 C
ATOM 7 C4' A B 553 -1.763 92.910 96.294 1.00 47.12 C
ATOM 8 O4' A B 553 -1.382 94.252 95.900 1.00 46.45 O
ATOM 9 C3' A B 553 -0.965 92.667 97.560 1.00 46.42 C
ATOM 10 O3' A B 553 -0.839 91.286 97.854 1.00 47.30 O
ATOM 11 C2' A B 553 0.362 93.325 97.219 1.00 45.63 C
ATOM 12 O2' A B 553 1.144 92.511 96.366 1.00 42.85 O
ATOM 13 C1' A B 553 -0.112 94.563 96.452 1.00 45.11 C
ATOM 14 N9 A B 553 -0.257 95.762 97.279 1.00 44.89 N
ATOM 15 C8 A B 553 -1.406 96.243 97.861 1.00 45.97 C
ATOM 16 N7 A B 553 -1.235 97.358 98.531 1.00 47.17 N
ATOM 17 C5 A B 553 0.121 97.630 98.385 1.00 47.33 C
ATOM 18 C6 A B 553 0.936 98.686 98.855 1.00 46.92 C
ATOM 19 N6 A B 553 0.485 99.699 99.596 1.00 48.38 N
ATOM 20 N1 A B 553 2.245 98.661 98.531 1.00 46.01 N
ATOM 21 C2 A B 553 2.697 97.644 97.786 1.00 47.05 C
ATOM 22 N3 A B 553 2.036 96.598 97.284 1.00 45.97 N
ATOM 23 C4 A B 553 0.737 96.651 97.622 1.00 46.24 C
ATOM 24 P A B 554 -1.082 90.771 99.358 1.00 49.80 P
ATOM 25 OP1 A B 554 -1.348 89.306 99.289 1.00 48.95 O
ATOM 26 OP2 A B 554 -2.067 91.673 100.017 1.00 49.84 O
ATOM 27 O5' A B 554 0.315 90.997 100.086 1.00 48.18 O
TER
Atoms:
OP1: (-6.009,105.285,104.510)
OP2: (-7.542,103.301,103.939)
C3': (-2.911,102.252,102.120)
C1': (-2.917,100.099,103.069)
C5': (-3.713,103.349,104.282)
O6: (-7.494,96.496,101.631)
O4': (-3.074,101.040,104.119)
C8: (-5.454,99.964,103.131)
C2: (-3.962,96.288,101.310)
C6: (-6.311,96.850,101.716)
C5: (-5.781,98.054,102.250)
C4: (-4.415,98.231,102.258)
P: (-6.297,103.829,104.564)
C4': (-2.772,102.370,103.629)
C2': (-2.382,100.852,101.851)
O2': (-0.969,100.790,101.840)
N1: (-5.304,96.013,101.257)
N2: (-3.147,95.352,100.814)
N3: (-3.455,97.398,101.811)
N7: (-6.424,99.155,102.802)
N9: (-4.209,99.462,102.830)
O5': (-5.072,103.035,103.926)
O3': (-2.143,103.236,101.447)
OP2: (-7.542,103.301,103.939)
C3': (-2.911,102.252,102.120)
C1': (-2.917,100.099,103.069)
C5': (-3.713,103.349,104.282)
O6: (-7.494,96.496,101.631)
O4': (-3.074,101.040,104.119)
C8: (-5.454,99.964,103.131)
C2: (-3.962,96.288,101.310)
C6: (-6.311,96.850,101.716)
C5: (-5.781,98.054,102.250)
C4: (-4.415,98.231,102.258)
P: (-6.297,103.829,104.564)
C4': (-2.772,102.370,103.629)
C2': (-2.382,100.852,101.851)
O2': (-0.969,100.790,101.840)
N1: (-5.304,96.013,101.257)
N2: (-3.147,95.352,100.814)
N3: (-3.455,97.398,101.811)
N7: (-6.424,99.155,102.802)
N9: (-4.209,99.462,102.830)
O5': (-5.072,103.035,103.926)
O3': (-2.143,103.236,101.447)
OP1: (-5.848,92.315,97.698)
OP2: (-5.426,94.333,99.217)
C3': (-0.965,92.667,97.560)
C1': (-0.112,94.563,96.452)
C5': (-3.259,92.816,96.431)
O4': (-1.382,94.252,95.900)
C8: (-1.406,96.243,97.861)
O2': (1.144,92.511,96.366)
C6: (0.936,98.686,98.855)
C5: (0.121,97.630,98.385)
C4: (0.737,96.651,97.622)
P: (-5.260,93.655,97.906)
C4': (-1.763,92.910,96.294)
C2': (0.362,93.325,97.219)
C2: (2.697,97.644,97.786)
N1: (2.245,98.661,98.531)
N3: (2.036,96.598,97.284)
N6: (0.485,99.699,99.596)
N7: (-1.235,97.358,98.531)
N9: (-0.257,95.762,97.279)
O5': (-3.706,93.526,97.595)
O3': (-0.839,91.286,97.854)
OP2: (-5.426,94.333,99.217)
C3': (-0.965,92.667,97.560)
C1': (-0.112,94.563,96.452)
C5': (-3.259,92.816,96.431)
O4': (-1.382,94.252,95.900)
C8: (-1.406,96.243,97.861)
O2': (1.144,92.511,96.366)
C6: (0.936,98.686,98.855)
C5: (0.121,97.630,98.385)
C4: (0.737,96.651,97.622)
P: (-5.260,93.655,97.906)
C4': (-1.763,92.910,96.294)
C2': (0.362,93.325,97.219)
C2: (2.697,97.644,97.786)
N1: (2.245,98.661,98.531)
N3: (2.036,96.598,97.284)
N6: (0.485,99.699,99.596)
N7: (-1.235,97.358,98.531)
N9: (-0.257,95.762,97.279)
O5': (-3.706,93.526,97.595)
O3': (-0.839,91.286,97.854)
Image (generated by PyMOL):