Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3KNI:A1109:A1007
Extra
PDB:
ATOM 1 O3' C A1108 110.475-106.659 -2.172 1.00 47.91 O
ATOM 2 P G A1109 110.047-106.378 -3.696 1.00 60.30 P
ATOM 3 OP1 G A1109 108.619-106.764 -3.911 1.00 71.81 O
ATOM 4 OP2 G A1109 111.097-107.019 -4.519 1.00 64.33 O
ATOM 5 O5' G A1109 110.192-104.796 -3.852 1.00 46.76 O
ATOM 6 C5' G A1109 109.179-103.891 -3.403 1.00 50.56 C
ATOM 7 C4' G A1109 109.488-102.501 -3.901 1.00 51.39 C
ATOM 8 O4' G A1109 110.788-102.141 -3.379 1.00 50.08 O
ATOM 9 C3' G A1109 109.612-102.434 -5.415 1.00 49.13 C
ATOM 10 O3' G A1109 108.389-102.000 -5.997 1.00 45.91 O
ATOM 11 C2' G A1109 110.699-101.395 -5.638 1.00 52.50 C
ATOM 12 O2' G A1109 110.151-100.090 -5.691 1.00 50.72 O
ATOM 13 C1' G A1109 111.595-101.600 -4.408 1.00 52.83 C
ATOM 14 N9 G A1109 112.714-102.526 -4.614 1.00 54.44 N
ATOM 15 C8 G A1109 112.649-103.902 -4.597 1.00 51.53 C
ATOM 16 N7 G A1109 113.800-104.476 -4.799 1.00 44.77 N
ATOM 17 C5 G A1109 114.686-103.426 -4.957 1.00 49.69 C
ATOM 18 C6 G A1109 116.071-103.445 -5.198 1.00 51.91 C
ATOM 19 O6 G A1109 116.818-104.432 -5.298 1.00 49.50 O
ATOM 20 N1 G A1109 116.589-102.151 -5.313 1.00 52.67 N
ATOM 21 C2 G A1109 115.853-100.991 -5.193 1.00 50.15 C
ATOM 22 N2 G A1109 116.518 -99.847 -5.339 1.00 44.17 N
ATOM 23 N3 G A1109 114.557-100.965 -4.952 1.00 54.37 N
ATOM 24 C4 G A1109 114.037-102.210 -4.850 1.00 53.38 C
ATOM 25 P A A1110 107.669-102.898 -7.118 1.00 50.78 P
ATOM 26 OP1 A A1110 106.326-103.204 -6.560 1.00 43.96 O
ATOM 27 OP2 A A1110 108.594-104.004 -7.502 1.00 53.87 O
ATOM 28 O5' A A1110 107.507-101.932 -8.384 1.00 44.49 O
TER
ATOM 1 O3' U B1006 120.330-102.306 -8.420 1.00 45.60 O
ATOM 2 P A B1007 120.312-101.228 -7.239 1.00 52.52 P
ATOM 3 OP1 A B1007 121.698-100.906 -6.825 1.00 56.38 O
ATOM 4 OP2 A B1007 119.353-101.750 -6.228 1.00 55.78 O
ATOM 5 O5' A B1007 119.696 -99.935 -7.944 1.00 52.44 O
ATOM 6 C5' A B1007 120.074 -99.570 -9.274 1.00 48.34 C
ATOM 7 C4' A B1007 119.410 -98.269 -9.669 1.00 45.71 C
ATOM 8 O4' A B1007 118.134 -98.510 -10.313 1.00 46.37 O
ATOM 9 C3' A B1007 119.083 -97.352 -8.511 1.00 50.61 C
ATOM 10 O3' A B1007 120.207 -96.612 -8.065 1.00 57.43 O
ATOM 11 C2' A B1007 117.949 -96.493 -9.057 1.00 55.64 C
ATOM 12 O2' A B1007 118.401 -95.392 -9.828 1.00 51.99 O
ATOM 13 C1' A B1007 117.207 -97.496 -9.946 1.00 53.91 C
ATOM 14 N9 A B1007 116.038 -98.142 -9.320 1.00 55.78 N
ATOM 15 C8 A B1007 116.042 -99.291 -8.564 1.00 54.86 C
ATOM 16 N7 A B1007 114.849 -99.683 -8.181 1.00 52.49 N
ATOM 17 C5 A B1007 113.993 -98.724 -8.711 1.00 55.06 C
ATOM 18 C6 A B1007 112.580 -98.581 -8.681 1.00 51.60 C
ATOM 19 N6 A B1007 111.751 -99.452 -8.098 1.00 49.82 N
ATOM 20 N1 A B1007 112.047 -97.504 -9.292 1.00 49.00 N
ATOM 21 C2 A B1007 112.867 -96.640 -9.900 1.00 50.83 C
ATOM 22 N3 A B1007 114.198 -96.672 -10.016 1.00 54.50 N
ATOM 23 C4 A B1007 114.710 -97.752 -9.394 1.00 56.68 C
ATOM 24 P A B1008 120.485 -96.468 -6.482 1.00 75.64 P
ATOM 25 OP1 A B1008 121.901 -96.056 -6.299 1.00 76.96 O
ATOM 26 OP2 A B1008 119.997 -97.714 -5.807 1.00 61.10 O
ATOM 27 O5' A B1008 119.543 -95.254 -6.038 1.00 62.11 O
TER
ATOM 2 P G A1109 110.047-106.378 -3.696 1.00 60.30 P
ATOM 3 OP1 G A1109 108.619-106.764 -3.911 1.00 71.81 O
ATOM 4 OP2 G A1109 111.097-107.019 -4.519 1.00 64.33 O
ATOM 5 O5' G A1109 110.192-104.796 -3.852 1.00 46.76 O
ATOM 6 C5' G A1109 109.179-103.891 -3.403 1.00 50.56 C
ATOM 7 C4' G A1109 109.488-102.501 -3.901 1.00 51.39 C
ATOM 8 O4' G A1109 110.788-102.141 -3.379 1.00 50.08 O
ATOM 9 C3' G A1109 109.612-102.434 -5.415 1.00 49.13 C
ATOM 10 O3' G A1109 108.389-102.000 -5.997 1.00 45.91 O
ATOM 11 C2' G A1109 110.699-101.395 -5.638 1.00 52.50 C
ATOM 12 O2' G A1109 110.151-100.090 -5.691 1.00 50.72 O
ATOM 13 C1' G A1109 111.595-101.600 -4.408 1.00 52.83 C
ATOM 14 N9 G A1109 112.714-102.526 -4.614 1.00 54.44 N
ATOM 15 C8 G A1109 112.649-103.902 -4.597 1.00 51.53 C
ATOM 16 N7 G A1109 113.800-104.476 -4.799 1.00 44.77 N
ATOM 17 C5 G A1109 114.686-103.426 -4.957 1.00 49.69 C
ATOM 18 C6 G A1109 116.071-103.445 -5.198 1.00 51.91 C
ATOM 19 O6 G A1109 116.818-104.432 -5.298 1.00 49.50 O
ATOM 20 N1 G A1109 116.589-102.151 -5.313 1.00 52.67 N
ATOM 21 C2 G A1109 115.853-100.991 -5.193 1.00 50.15 C
ATOM 22 N2 G A1109 116.518 -99.847 -5.339 1.00 44.17 N
ATOM 23 N3 G A1109 114.557-100.965 -4.952 1.00 54.37 N
ATOM 24 C4 G A1109 114.037-102.210 -4.850 1.00 53.38 C
ATOM 25 P A A1110 107.669-102.898 -7.118 1.00 50.78 P
ATOM 26 OP1 A A1110 106.326-103.204 -6.560 1.00 43.96 O
ATOM 27 OP2 A A1110 108.594-104.004 -7.502 1.00 53.87 O
ATOM 28 O5' A A1110 107.507-101.932 -8.384 1.00 44.49 O
TER
ATOM 1 O3' U B1006 120.330-102.306 -8.420 1.00 45.60 O
ATOM 2 P A B1007 120.312-101.228 -7.239 1.00 52.52 P
ATOM 3 OP1 A B1007 121.698-100.906 -6.825 1.00 56.38 O
ATOM 4 OP2 A B1007 119.353-101.750 -6.228 1.00 55.78 O
ATOM 5 O5' A B1007 119.696 -99.935 -7.944 1.00 52.44 O
ATOM 6 C5' A B1007 120.074 -99.570 -9.274 1.00 48.34 C
ATOM 7 C4' A B1007 119.410 -98.269 -9.669 1.00 45.71 C
ATOM 8 O4' A B1007 118.134 -98.510 -10.313 1.00 46.37 O
ATOM 9 C3' A B1007 119.083 -97.352 -8.511 1.00 50.61 C
ATOM 10 O3' A B1007 120.207 -96.612 -8.065 1.00 57.43 O
ATOM 11 C2' A B1007 117.949 -96.493 -9.057 1.00 55.64 C
ATOM 12 O2' A B1007 118.401 -95.392 -9.828 1.00 51.99 O
ATOM 13 C1' A B1007 117.207 -97.496 -9.946 1.00 53.91 C
ATOM 14 N9 A B1007 116.038 -98.142 -9.320 1.00 55.78 N
ATOM 15 C8 A B1007 116.042 -99.291 -8.564 1.00 54.86 C
ATOM 16 N7 A B1007 114.849 -99.683 -8.181 1.00 52.49 N
ATOM 17 C5 A B1007 113.993 -98.724 -8.711 1.00 55.06 C
ATOM 18 C6 A B1007 112.580 -98.581 -8.681 1.00 51.60 C
ATOM 19 N6 A B1007 111.751 -99.452 -8.098 1.00 49.82 N
ATOM 20 N1 A B1007 112.047 -97.504 -9.292 1.00 49.00 N
ATOM 21 C2 A B1007 112.867 -96.640 -9.900 1.00 50.83 C
ATOM 22 N3 A B1007 114.198 -96.672 -10.016 1.00 54.50 N
ATOM 23 C4 A B1007 114.710 -97.752 -9.394 1.00 56.68 C
ATOM 24 P A B1008 120.485 -96.468 -6.482 1.00 75.64 P
ATOM 25 OP1 A B1008 121.901 -96.056 -6.299 1.00 76.96 O
ATOM 26 OP2 A B1008 119.997 -97.714 -5.807 1.00 61.10 O
ATOM 27 O5' A B1008 119.543 -95.254 -6.038 1.00 62.11 O
TER
Atoms:
OP1: (108.619,-106.764,-3.911)
OP2: (111.097,-107.019,-4.519)
C3': (109.612,-102.434,-5.415)
C1': (111.595,-101.600,-4.408)
C5': (109.179,-103.891,-3.403)
O6: (116.818,-104.432,-5.298)
O4': (110.788,-102.141,-3.379)
C8: (112.649,-103.902,-4.597)
C2: (115.853,-100.991,-5.193)
C6: (116.071,-103.445,-5.198)
C5: (114.686,-103.426,-4.957)
C4: (114.037,-102.210,-4.850)
P: (110.047,-106.378,-3.696)
C4': (109.488,-102.501,-3.901)
C2': (110.699,-101.395,-5.638)
O2': (110.151,-100.090,-5.691)
N1: (116.589,-102.151,-5.313)
N2: (116.518,-99.847,-5.339)
N3: (114.557,-100.965,-4.952)
N7: (113.800,-104.476,-4.799)
N9: (112.714,-102.526,-4.614)
O5': (110.192,-104.796,-3.852)
O3': (108.389,-102.000,-5.997)
OP2: (111.097,-107.019,-4.519)
C3': (109.612,-102.434,-5.415)
C1': (111.595,-101.600,-4.408)
C5': (109.179,-103.891,-3.403)
O6: (116.818,-104.432,-5.298)
O4': (110.788,-102.141,-3.379)
C8: (112.649,-103.902,-4.597)
C2: (115.853,-100.991,-5.193)
C6: (116.071,-103.445,-5.198)
C5: (114.686,-103.426,-4.957)
C4: (114.037,-102.210,-4.850)
P: (110.047,-106.378,-3.696)
C4': (109.488,-102.501,-3.901)
C2': (110.699,-101.395,-5.638)
O2': (110.151,-100.090,-5.691)
N1: (116.589,-102.151,-5.313)
N2: (116.518,-99.847,-5.339)
N3: (114.557,-100.965,-4.952)
N7: (113.800,-104.476,-4.799)
N9: (112.714,-102.526,-4.614)
O5': (110.192,-104.796,-3.852)
O3': (108.389,-102.000,-5.997)
OP1: (121.698,-100.906,-6.825)
OP2: (119.353,-101.750,-6.228)
C3': (119.083,-97.352,-8.511)
C1': (117.207,-97.496,-9.946)
C5': (120.074,-99.570,-9.274)
O4': (118.134,-98.510,-10.313)
C8: (116.042,-99.291,-8.564)
O2': (118.401,-95.392,-9.828)
C6: (112.580,-98.581,-8.681)
C5: (113.993,-98.724,-8.711)
C4: (114.710,-97.752,-9.394)
P: (120.312,-101.228,-7.239)
C4': (119.410,-98.269,-9.669)
C2': (117.949,-96.493,-9.057)
C2: (112.867,-96.640,-9.900)
N1: (112.047,-97.504,-9.292)
N3: (114.198,-96.672,-10.016)
N6: (111.751,-99.452,-8.098)
N7: (114.849,-99.683,-8.181)
N9: (116.038,-98.142,-9.320)
O5': (119.696,-99.935,-7.944)
O3': (120.207,-96.612,-8.065)
OP2: (119.353,-101.750,-6.228)
C3': (119.083,-97.352,-8.511)
C1': (117.207,-97.496,-9.946)
C5': (120.074,-99.570,-9.274)
O4': (118.134,-98.510,-10.313)
C8: (116.042,-99.291,-8.564)
O2': (118.401,-95.392,-9.828)
C6: (112.580,-98.581,-8.681)
C5: (113.993,-98.724,-8.711)
C4: (114.710,-97.752,-9.394)
P: (120.312,-101.228,-7.239)
C4': (119.410,-98.269,-9.669)
C2': (117.949,-96.493,-9.057)
C2: (112.867,-96.640,-9.900)
N1: (112.047,-97.504,-9.292)
N3: (114.198,-96.672,-10.016)
N6: (111.751,-99.452,-8.098)
N7: (114.849,-99.683,-8.181)
N9: (116.038,-98.142,-9.320)
O5': (119.696,-99.935,-7.944)
O3': (120.207,-96.612,-8.065)
Image (generated by PyMOL):