Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0270:0356
Extra
PDB:
ATOM 1 O3' U A 269 67.764 97.285 -17.086 1.00128.08 O
ATOM 2 P C A 270 67.073 98.617 -17.676 1.00130.05 P
ATOM 3 OP1 C A 270 65.697 98.237 -18.086 1.00130.09 O
ATOM 4 OP2 C A 270 67.982 99.261 -18.658 1.00130.09 O
ATOM 5 O5' C A 270 66.949 99.586 -16.421 1.00131.84 O
ATOM 6 C5' C A 270 66.400 99.102 -15.188 1.00135.59 C
ATOM 7 C4' C A 270 66.904 99.918 -14.022 1.00137.53 C
ATOM 8 O4' C A 270 68.331 100.141 -14.163 1.00137.96 O
ATOM 9 C3' C A 270 66.386 101.340 -13.900 1.00138.02 C
ATOM 10 O3' C A 270 65.066 101.334 -13.356 1.00139.62 O
ATOM 11 C2' C A 270 67.399 101.938 -12.927 1.00137.84 C
ATOM 12 O2' C A 270 67.173 101.501 -11.604 1.00137.24 O
ATOM 13 C1' C A 270 68.695 101.261 -13.376 1.00137.98 C
ATOM 14 N1 C A 270 69.656 102.106 -14.115 1.00138.31 N
ATOM 15 C2 C A 270 70.503 102.963 -13.388 1.00138.45 C
ATOM 16 O2 C A 270 70.400 103.016 -12.150 1.00138.31 O
ATOM 17 N3 C A 270 71.409 103.714 -14.054 1.00138.63 N
ATOM 18 C4 C A 270 71.489 103.641 -15.385 1.00138.57 C
ATOM 19 N4 C A 270 72.407 104.392 -15.998 1.00138.83 N
ATOM 20 C5 C A 270 70.632 102.794 -16.147 1.00138.73 C
ATOM 21 C6 C A 270 69.738 102.054 -15.479 1.00138.69 C
ATOM 22 P U A 271 64.131 102.639 -13.487 1.00141.11 P
ATOM 23 OP1 U A 271 62.713 102.197 -13.454 1.00140.79 O
ATOM 24 OP2 U A 271 64.620 103.433 -14.641 1.00141.06 O
ATOM 25 O5' U A 271 64.431 103.463 -12.152 1.00142.92 O
TER
ATOM 1 O3' G B 355 72.697 106.628 -7.431 1.00108.30 O
ATOM 2 P C B 356 73.635 105.334 -7.260 1.00108.09 P
ATOM 3 OP1 C B 356 74.864 105.741 -6.525 1.00107.70 O
ATOM 4 OP2 C B 356 73.759 104.655 -8.572 1.00108.77 O
ATOM 5 O5' C B 356 72.769 104.419 -6.288 1.00108.36 O
ATOM 6 C5' C B 356 72.104 105.004 -5.153 1.00109.03 C
ATOM 7 C4' C B 356 70.844 104.243 -4.816 1.00109.76 C
ATOM 8 O4' C B 356 69.866 104.367 -5.884 1.00110.37 O
ATOM 9 C3' C B 356 70.996 102.745 -4.646 1.00109.33 C
ATOM 10 O3' C B 356 71.565 102.412 -3.390 1.00108.54 O
ATOM 11 C2' C B 356 69.558 102.269 -4.801 1.00110.09 C
ATOM 12 O2' C B 356 68.784 102.457 -3.632 1.00109.35 O
ATOM 13 C1' C B 356 69.060 103.194 -5.922 1.00110.93 C
ATOM 14 N1 C B 356 69.188 102.566 -7.254 1.00111.70 N
ATOM 15 C2 C B 356 68.123 101.784 -7.752 1.00111.70 C
ATOM 16 O2 C B 356 67.063 101.708 -7.104 1.00110.89 O
ATOM 17 N3 C B 356 68.280 101.137 -8.928 1.00112.03 N
ATOM 18 C4 C B 356 69.425 101.255 -9.608 1.00112.50 C
ATOM 19 N4 C B 356 69.555 100.561 -10.734 1.00113.27 N
ATOM 20 C5 C B 356 70.493 102.081 -9.155 1.00112.15 C
ATOM 21 C6 C B 356 70.334 102.711 -7.988 1.00111.87 C
ATOM 22 P G B 357 72.839 101.437 -3.337 1.00109.17 P
ATOM 23 OP1 G B 357 73.101 101.129 -1.906 1.00108.65 O
ATOM 24 OP2 G B 357 73.928 102.012 -4.174 1.00108.46 O
ATOM 25 O5' G B 357 72.317 100.116 -4.059 1.00110.70 O
TER
ATOM 2 P C A 270 67.073 98.617 -17.676 1.00130.05 P
ATOM 3 OP1 C A 270 65.697 98.237 -18.086 1.00130.09 O
ATOM 4 OP2 C A 270 67.982 99.261 -18.658 1.00130.09 O
ATOM 5 O5' C A 270 66.949 99.586 -16.421 1.00131.84 O
ATOM 6 C5' C A 270 66.400 99.102 -15.188 1.00135.59 C
ATOM 7 C4' C A 270 66.904 99.918 -14.022 1.00137.53 C
ATOM 8 O4' C A 270 68.331 100.141 -14.163 1.00137.96 O
ATOM 9 C3' C A 270 66.386 101.340 -13.900 1.00138.02 C
ATOM 10 O3' C A 270 65.066 101.334 -13.356 1.00139.62 O
ATOM 11 C2' C A 270 67.399 101.938 -12.927 1.00137.84 C
ATOM 12 O2' C A 270 67.173 101.501 -11.604 1.00137.24 O
ATOM 13 C1' C A 270 68.695 101.261 -13.376 1.00137.98 C
ATOM 14 N1 C A 270 69.656 102.106 -14.115 1.00138.31 N
ATOM 15 C2 C A 270 70.503 102.963 -13.388 1.00138.45 C
ATOM 16 O2 C A 270 70.400 103.016 -12.150 1.00138.31 O
ATOM 17 N3 C A 270 71.409 103.714 -14.054 1.00138.63 N
ATOM 18 C4 C A 270 71.489 103.641 -15.385 1.00138.57 C
ATOM 19 N4 C A 270 72.407 104.392 -15.998 1.00138.83 N
ATOM 20 C5 C A 270 70.632 102.794 -16.147 1.00138.73 C
ATOM 21 C6 C A 270 69.738 102.054 -15.479 1.00138.69 C
ATOM 22 P U A 271 64.131 102.639 -13.487 1.00141.11 P
ATOM 23 OP1 U A 271 62.713 102.197 -13.454 1.00140.79 O
ATOM 24 OP2 U A 271 64.620 103.433 -14.641 1.00141.06 O
ATOM 25 O5' U A 271 64.431 103.463 -12.152 1.00142.92 O
TER
ATOM 1 O3' G B 355 72.697 106.628 -7.431 1.00108.30 O
ATOM 2 P C B 356 73.635 105.334 -7.260 1.00108.09 P
ATOM 3 OP1 C B 356 74.864 105.741 -6.525 1.00107.70 O
ATOM 4 OP2 C B 356 73.759 104.655 -8.572 1.00108.77 O
ATOM 5 O5' C B 356 72.769 104.419 -6.288 1.00108.36 O
ATOM 6 C5' C B 356 72.104 105.004 -5.153 1.00109.03 C
ATOM 7 C4' C B 356 70.844 104.243 -4.816 1.00109.76 C
ATOM 8 O4' C B 356 69.866 104.367 -5.884 1.00110.37 O
ATOM 9 C3' C B 356 70.996 102.745 -4.646 1.00109.33 C
ATOM 10 O3' C B 356 71.565 102.412 -3.390 1.00108.54 O
ATOM 11 C2' C B 356 69.558 102.269 -4.801 1.00110.09 C
ATOM 12 O2' C B 356 68.784 102.457 -3.632 1.00109.35 O
ATOM 13 C1' C B 356 69.060 103.194 -5.922 1.00110.93 C
ATOM 14 N1 C B 356 69.188 102.566 -7.254 1.00111.70 N
ATOM 15 C2 C B 356 68.123 101.784 -7.752 1.00111.70 C
ATOM 16 O2 C B 356 67.063 101.708 -7.104 1.00110.89 O
ATOM 17 N3 C B 356 68.280 101.137 -8.928 1.00112.03 N
ATOM 18 C4 C B 356 69.425 101.255 -9.608 1.00112.50 C
ATOM 19 N4 C B 356 69.555 100.561 -10.734 1.00113.27 N
ATOM 20 C5 C B 356 70.493 102.081 -9.155 1.00112.15 C
ATOM 21 C6 C B 356 70.334 102.711 -7.988 1.00111.87 C
ATOM 22 P G B 357 72.839 101.437 -3.337 1.00109.17 P
ATOM 23 OP1 G B 357 73.101 101.129 -1.906 1.00108.65 O
ATOM 24 OP2 G B 357 73.928 102.012 -4.174 1.00108.46 O
ATOM 25 O5' G B 357 72.317 100.116 -4.059 1.00110.70 O
TER
Atoms:
C2: (70.503,102.963,-13.388)
OP1: (65.697,98.237,-18.086)
OP2: (67.982,99.261,-18.658)
C4: (71.489,103.641,-15.385)
O5': (66.949,99.586,-16.421)
C3': (66.386,101.340,-13.900)
C1': (68.695,101.261,-13.376)
O4': (68.331,100.141,-14.163)
C5': (66.400,99.102,-15.188)
P: (67.073,98.617,-17.676)
O2: (70.400,103.016,-12.150)
C4': (66.904,99.918,-14.022)
C2': (67.399,101.938,-12.927)
O2': (67.173,101.501,-11.604)
N1: (69.656,102.106,-14.115)
N3: (71.409,103.714,-14.054)
N4: (72.407,104.392,-15.998)
C6: (69.738,102.054,-15.479)
C5: (70.632,102.794,-16.147)
O3': (65.066,101.334,-13.356)
OP1: (65.697,98.237,-18.086)
OP2: (67.982,99.261,-18.658)
C4: (71.489,103.641,-15.385)
O5': (66.949,99.586,-16.421)
C3': (66.386,101.340,-13.900)
C1': (68.695,101.261,-13.376)
O4': (68.331,100.141,-14.163)
C5': (66.400,99.102,-15.188)
P: (67.073,98.617,-17.676)
O2: (70.400,103.016,-12.150)
C4': (66.904,99.918,-14.022)
C2': (67.399,101.938,-12.927)
O2': (67.173,101.501,-11.604)
N1: (69.656,102.106,-14.115)
N3: (71.409,103.714,-14.054)
N4: (72.407,104.392,-15.998)
C6: (69.738,102.054,-15.479)
C5: (70.632,102.794,-16.147)
O3': (65.066,101.334,-13.356)
C2: (68.123,101.784,-7.752)
OP1: (74.864,105.741,-6.525)
OP2: (73.759,104.655,-8.572)
C4: (69.425,101.255,-9.608)
O5': (72.769,104.419,-6.288)
C3': (70.996,102.745,-4.646)
C1': (69.060,103.194,-5.922)
O4': (69.866,104.367,-5.884)
C5': (72.104,105.004,-5.153)
P: (73.635,105.334,-7.260)
O2: (67.063,101.708,-7.104)
C4': (70.844,104.243,-4.816)
C2': (69.558,102.269,-4.801)
O2': (68.784,102.457,-3.632)
N1: (69.188,102.566,-7.254)
N3: (68.280,101.137,-8.928)
N4: (69.555,100.561,-10.734)
C6: (70.334,102.711,-7.988)
C5: (70.493,102.081,-9.155)
O3': (71.565,102.412,-3.390)
OP1: (74.864,105.741,-6.525)
OP2: (73.759,104.655,-8.572)
C4: (69.425,101.255,-9.608)
O5': (72.769,104.419,-6.288)
C3': (70.996,102.745,-4.646)
C1': (69.060,103.194,-5.922)
O4': (69.866,104.367,-5.884)
C5': (72.104,105.004,-5.153)
P: (73.635,105.334,-7.260)
O2: (67.063,101.708,-7.104)
C4': (70.844,104.243,-4.816)
C2': (69.558,102.269,-4.801)
O2': (68.784,102.457,-3.632)
N1: (69.188,102.566,-7.254)
N3: (68.280,101.137,-8.928)
N4: (69.555,100.561,-10.734)
C6: (70.334,102.711,-7.988)
C5: (70.493,102.081,-9.155)
O3': (71.565,102.412,-3.390)
Image (generated by PyMOL):