Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1979:1959
Extra
PDB:
ATOM 1 O3' U A 978 -11.391 -37.887 17.345 1.00143.77 O
ATOM 2 P G A 979 -9.829 -38.240 17.237 1.00130.24 P
ATOM 3 OP1 G A 979 -9.135 -37.027 16.712 1.00129.88 O
ATOM 4 OP2 G A 979 -9.717 -39.512 16.470 1.00130.23 O
ATOM 5 O5' G A 979 -9.425 -38.492 18.756 1.00130.36 O
ATOM 6 C5' G A 979 -8.711 -39.660 19.127 1.00130.33 C
ATOM 7 C4' G A 979 -9.361 -40.377 20.286 1.00130.72 C
ATOM 8 O4' G A 979 -10.628 -40.952 19.877 1.00131.07 O
ATOM 9 C3' G A 979 -8.585 -41.553 20.830 1.00130.70 C
ATOM 10 O3' G A 979 -7.585 -41.153 21.714 1.00130.51 O
ATOM 11 C2' G A 979 -9.655 -42.429 21.459 1.00131.16 C
ATOM 12 O2' G A 979 -10.036 -41.932 22.731 1.00131.38 O
ATOM 13 C1' G A 979 -10.809 -42.217 20.487 1.00131.32 C
ATOM 14 N9 G A 979 -10.831 -43.236 19.424 1.00131.28 N
ATOM 15 C8 G A 979 -10.837 -42.985 18.076 1.00131.07 C
ATOM 16 N7 G A 979 -10.861 -44.056 17.342 1.00131.08 N
ATOM 17 C5 G A 979 -10.877 -45.079 18.268 1.00131.31 C
ATOM 18 C6 G A 979 -10.916 -46.476 18.058 1.00131.43 C
ATOM 19 O6 G A 979 -10.944 -47.103 16.986 1.00131.35 O
ATOM 20 N1 G A 979 -10.919 -47.144 19.280 1.00131.66 N
ATOM 21 C2 G A 979 -10.889 -46.560 20.528 1.00131.76 C
ATOM 22 N2 G A 979 -10.898 -47.406 21.572 1.00131.99 N
ATOM 23 N3 G A 979 -10.861 -45.255 20.730 1.00131.65 N
ATOM 24 C4 G A 979 -10.862 -44.590 19.560 1.00131.43 C
ATOM 25 P A A 980 -6.081 -41.066 21.198 1.00124.77 P
ATOM 26 OP1 A A 980 -5.581 -39.705 21.512 1.00124.55 O
ATOM 27 OP2 A A 980 -6.071 -41.519 19.782 1.00124.62 O
ATOM 28 O5' A A 980 -5.366 -42.142 22.115 1.00124.81 O
TER
ATOM 1 O3' U B 958 -9.379 -56.638 12.357 1.00129.37 O
ATOM 2 P U B 959 -10.938 -56.944 12.589 1.00156.06 P
ATOM 3 OP1 U B 959 -11.155 -58.371 12.251 1.00156.22 O
ATOM 4 OP2 U B 959 -11.713 -55.911 11.851 1.00156.07 O
ATOM 5 O5' U B 959 -11.094 -56.735 14.158 1.00156.29 O
ATOM 6 C5' U B 959 -11.502 -55.486 14.701 1.00156.35 C
ATOM 7 C4' U B 959 -12.168 -55.674 16.029 1.00156.73 C
ATOM 8 O4' U B 959 -11.577 -54.767 17.008 1.00156.61 O
ATOM 9 C3' U B 959 -13.683 -55.424 16.039 1.00157.11 C
ATOM 10 O3' U B 959 -14.337 -56.457 16.806 1.00157.50 O
ATOM 11 C2' U B 959 -13.790 -54.055 16.734 1.00157.09 C
ATOM 12 O2' U B 959 -15.023 -53.793 17.379 1.00157.49 O
ATOM 13 C1' U B 959 -12.610 -54.113 17.713 1.00156.91 C
ATOM 14 N1 U B 959 -12.115 -52.778 18.183 1.00156.71 N
ATOM 15 C2 U B 959 -11.922 -52.650 19.558 1.00156.83 C
ATOM 16 O2 U B 959 -12.096 -53.551 20.356 1.00157.07 O
ATOM 17 N3 U B 959 -11.499 -51.428 19.991 1.00156.65 N
ATOM 18 C4 U B 959 -11.262 -50.332 19.208 1.00156.37 C
ATOM 19 O4 U B 959 -10.884 -49.323 19.784 1.00156.25 O
ATOM 20 C5 U B 959 -11.485 -50.506 17.800 1.00156.26 C
ATOM 21 C6 U B 959 -11.896 -51.696 17.345 1.00156.43 C
ATOM 22 P C B 960 -13.949 -58.019 16.556 1.00188.75 P
ATOM 23 OP1 C B 960 -12.894 -58.369 17.552 1.00188.63 O
ATOM 24 OP2 C B 960 -13.643 -58.171 15.101 1.00188.48 O
ATOM 25 O5' C B 960 -15.287 -58.807 16.905 1.00189.24 O
TER
ATOM 2 P G A 979 -9.829 -38.240 17.237 1.00130.24 P
ATOM 3 OP1 G A 979 -9.135 -37.027 16.712 1.00129.88 O
ATOM 4 OP2 G A 979 -9.717 -39.512 16.470 1.00130.23 O
ATOM 5 O5' G A 979 -9.425 -38.492 18.756 1.00130.36 O
ATOM 6 C5' G A 979 -8.711 -39.660 19.127 1.00130.33 C
ATOM 7 C4' G A 979 -9.361 -40.377 20.286 1.00130.72 C
ATOM 8 O4' G A 979 -10.628 -40.952 19.877 1.00131.07 O
ATOM 9 C3' G A 979 -8.585 -41.553 20.830 1.00130.70 C
ATOM 10 O3' G A 979 -7.585 -41.153 21.714 1.00130.51 O
ATOM 11 C2' G A 979 -9.655 -42.429 21.459 1.00131.16 C
ATOM 12 O2' G A 979 -10.036 -41.932 22.731 1.00131.38 O
ATOM 13 C1' G A 979 -10.809 -42.217 20.487 1.00131.32 C
ATOM 14 N9 G A 979 -10.831 -43.236 19.424 1.00131.28 N
ATOM 15 C8 G A 979 -10.837 -42.985 18.076 1.00131.07 C
ATOM 16 N7 G A 979 -10.861 -44.056 17.342 1.00131.08 N
ATOM 17 C5 G A 979 -10.877 -45.079 18.268 1.00131.31 C
ATOM 18 C6 G A 979 -10.916 -46.476 18.058 1.00131.43 C
ATOM 19 O6 G A 979 -10.944 -47.103 16.986 1.00131.35 O
ATOM 20 N1 G A 979 -10.919 -47.144 19.280 1.00131.66 N
ATOM 21 C2 G A 979 -10.889 -46.560 20.528 1.00131.76 C
ATOM 22 N2 G A 979 -10.898 -47.406 21.572 1.00131.99 N
ATOM 23 N3 G A 979 -10.861 -45.255 20.730 1.00131.65 N
ATOM 24 C4 G A 979 -10.862 -44.590 19.560 1.00131.43 C
ATOM 25 P A A 980 -6.081 -41.066 21.198 1.00124.77 P
ATOM 26 OP1 A A 980 -5.581 -39.705 21.512 1.00124.55 O
ATOM 27 OP2 A A 980 -6.071 -41.519 19.782 1.00124.62 O
ATOM 28 O5' A A 980 -5.366 -42.142 22.115 1.00124.81 O
TER
ATOM 1 O3' U B 958 -9.379 -56.638 12.357 1.00129.37 O
ATOM 2 P U B 959 -10.938 -56.944 12.589 1.00156.06 P
ATOM 3 OP1 U B 959 -11.155 -58.371 12.251 1.00156.22 O
ATOM 4 OP2 U B 959 -11.713 -55.911 11.851 1.00156.07 O
ATOM 5 O5' U B 959 -11.094 -56.735 14.158 1.00156.29 O
ATOM 6 C5' U B 959 -11.502 -55.486 14.701 1.00156.35 C
ATOM 7 C4' U B 959 -12.168 -55.674 16.029 1.00156.73 C
ATOM 8 O4' U B 959 -11.577 -54.767 17.008 1.00156.61 O
ATOM 9 C3' U B 959 -13.683 -55.424 16.039 1.00157.11 C
ATOM 10 O3' U B 959 -14.337 -56.457 16.806 1.00157.50 O
ATOM 11 C2' U B 959 -13.790 -54.055 16.734 1.00157.09 C
ATOM 12 O2' U B 959 -15.023 -53.793 17.379 1.00157.49 O
ATOM 13 C1' U B 959 -12.610 -54.113 17.713 1.00156.91 C
ATOM 14 N1 U B 959 -12.115 -52.778 18.183 1.00156.71 N
ATOM 15 C2 U B 959 -11.922 -52.650 19.558 1.00156.83 C
ATOM 16 O2 U B 959 -12.096 -53.551 20.356 1.00157.07 O
ATOM 17 N3 U B 959 -11.499 -51.428 19.991 1.00156.65 N
ATOM 18 C4 U B 959 -11.262 -50.332 19.208 1.00156.37 C
ATOM 19 O4 U B 959 -10.884 -49.323 19.784 1.00156.25 O
ATOM 20 C5 U B 959 -11.485 -50.506 17.800 1.00156.26 C
ATOM 21 C6 U B 959 -11.896 -51.696 17.345 1.00156.43 C
ATOM 22 P C B 960 -13.949 -58.019 16.556 1.00188.75 P
ATOM 23 OP1 C B 960 -12.894 -58.369 17.552 1.00188.63 O
ATOM 24 OP2 C B 960 -13.643 -58.171 15.101 1.00188.48 O
ATOM 25 O5' C B 960 -15.287 -58.807 16.905 1.00189.24 O
TER
Atoms:
OP1: (-9.135,-37.027,16.712)
OP2: (-9.717,-39.512,16.470)
C3': (-8.585,-41.553,20.830)
C1': (-10.809,-42.217,20.487)
C5': (-8.711,-39.660,19.127)
O6: (-10.944,-47.103,16.986)
O4': (-10.628,-40.952,19.877)
C8: (-10.837,-42.985,18.076)
C2: (-10.889,-46.560,20.528)
C6: (-10.916,-46.476,18.058)
C5: (-10.877,-45.079,18.268)
C4: (-10.862,-44.590,19.560)
P: (-9.829,-38.240,17.237)
C4': (-9.361,-40.377,20.286)
C2': (-9.655,-42.429,21.459)
O2': (-10.036,-41.932,22.731)
N1: (-10.919,-47.144,19.280)
N2: (-10.898,-47.406,21.572)
N3: (-10.861,-45.255,20.730)
N7: (-10.861,-44.056,17.342)
N9: (-10.831,-43.236,19.424)
O5': (-9.425,-38.492,18.756)
O3': (-7.585,-41.153,21.714)
OP2: (-9.717,-39.512,16.470)
C3': (-8.585,-41.553,20.830)
C1': (-10.809,-42.217,20.487)
C5': (-8.711,-39.660,19.127)
O6: (-10.944,-47.103,16.986)
O4': (-10.628,-40.952,19.877)
C8: (-10.837,-42.985,18.076)
C2: (-10.889,-46.560,20.528)
C6: (-10.916,-46.476,18.058)
C5: (-10.877,-45.079,18.268)
C4: (-10.862,-44.590,19.560)
P: (-9.829,-38.240,17.237)
C4': (-9.361,-40.377,20.286)
C2': (-9.655,-42.429,21.459)
O2': (-10.036,-41.932,22.731)
N1: (-10.919,-47.144,19.280)
N2: (-10.898,-47.406,21.572)
N3: (-10.861,-45.255,20.730)
N7: (-10.861,-44.056,17.342)
N9: (-10.831,-43.236,19.424)
O5': (-9.425,-38.492,18.756)
O3': (-7.585,-41.153,21.714)
C4: (-11.262,-50.332,19.208)
N3: (-11.499,-51.428,19.991)
OP1: (-11.155,-58.371,12.251)
OP2: (-11.713,-55.911,11.851)
C2: (-11.922,-52.650,19.558)
C1': (-12.610,-54.113,17.713)
C3': (-13.683,-55.424,16.039)
O5': (-11.094,-56.735,14.158)
O4': (-11.577,-54.767,17.008)
C5': (-11.502,-55.486,14.701)
P: (-10.938,-56.944,12.589)
C4': (-12.168,-55.674,16.029)
C2': (-13.790,-54.055,16.734)
O2': (-15.023,-53.793,17.379)
N1: (-12.115,-52.778,18.183)
O4: (-10.884,-49.323,19.784)
O2: (-12.096,-53.551,20.356)
C6: (-11.896,-51.696,17.345)
C5: (-11.485,-50.506,17.800)
O3': (-14.337,-56.457,16.806)
N3: (-11.499,-51.428,19.991)
OP1: (-11.155,-58.371,12.251)
OP2: (-11.713,-55.911,11.851)
C2: (-11.922,-52.650,19.558)
C1': (-12.610,-54.113,17.713)
C3': (-13.683,-55.424,16.039)
O5': (-11.094,-56.735,14.158)
O4': (-11.577,-54.767,17.008)
C5': (-11.502,-55.486,14.701)
P: (-10.938,-56.944,12.589)
C4': (-12.168,-55.674,16.029)
C2': (-13.790,-54.055,16.734)
O2': (-15.023,-53.793,17.379)
N1: (-12.115,-52.778,18.183)
O4: (-10.884,-49.323,19.784)
O2: (-12.096,-53.551,20.356)
C6: (-11.896,-51.696,17.345)
C5: (-11.485,-50.506,17.800)
O3': (-14.337,-56.457,16.806)
Image (generated by PyMOL):