Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2V:A19:A17
Extra
PDB:
ATOM 1 O3' U A 18 -6.064 37.799 -25.674 1.00 41.61 O
ATOM 2 P C A 19 -6.763 38.169 -24.280 1.00 42.42 P
ATOM 3 OP1 C A 19 -5.998 39.270 -23.650 1.00 45.16 O
ATOM 4 OP2 C A 19 -6.974 36.905 -23.543 1.00 40.19 O
ATOM 5 O5' C A 19 -8.194 38.737 -24.725 1.00 43.95 O
ATOM 6 C5' C A 19 -9.032 37.952 -25.568 1.00 43.43 C
ATOM 7 C4' C A 19 -10.463 38.460 -25.573 1.00 42.71 C
ATOM 8 O4' C A 19 -10.490 39.858 -25.959 1.00 37.13 O
ATOM 9 C3' C A 19 -11.376 37.759 -26.571 1.00 37.06 C
ATOM 10 O3' C A 19 -11.927 36.570 -25.999 1.00 36.26 O
ATOM 11 C2' C A 19 -12.442 38.826 -26.799 1.00 40.82 C
ATOM 12 O2' C A 19 -13.410 38.850 -25.768 1.00 39.86 O
ATOM 13 C1' C A 19 -11.619 40.113 -26.776 1.00 40.81 C
ATOM 14 N1 C A 19 -11.160 40.559 -28.133 1.00 41.07 N
ATOM 15 C2 C A 19 -12.105 40.906 -29.108 1.00 38.98 C
ATOM 16 O2 C A 19 -13.309 40.843 -28.835 1.00 36.85 O
ATOM 17 N3 C A 19 -11.675 41.304 -30.331 1.00 35.63 N
ATOM 18 C4 C A 19 -10.369 41.363 -30.595 1.00 36.59 C
ATOM 19 N4 C A 19 -9.997 41.761 -31.816 1.00 34.28 N
ATOM 20 C5 C A 19 -9.391 41.014 -29.615 1.00 35.58 C
ATOM 21 C6 C A 19 -9.825 40.623 -28.412 1.00 35.93 C
ATOM 22 P A A 20 -12.020 35.217 -26.858 1.00 42.80 P
ATOM 23 OP1 A A 20 -12.481 34.133 -25.960 1.00 47.39 O
ATOM 24 OP2 A A 20 -10.759 35.063 -27.615 1.00 42.55 O
ATOM 25 O5' A A 20 -13.197 35.525 -27.895 1.00 44.07 O
TER
ATOM 1 O3' G B 16 -2.593 40.411 -35.881 1.00 36.46 O
ATOM 2 P U B 17 -3.604 41.635 -35.651 1.00 50.54 P
ATOM 3 OP1 U B 17 -4.889 41.278 -36.295 1.00 43.78 O
ATOM 4 OP2 U B 17 -2.899 42.871 -36.053 1.00 46.30 O
ATOM 5 O5' U B 17 -3.853 41.680 -34.070 1.00 41.78 O
ATOM 6 C5' U B 17 -3.010 42.448 -33.216 1.00 43.49 C
ATOM 7 C4' U B 17 -3.845 43.205 -32.196 1.00 44.20 C
ATOM 8 O4' U B 17 -4.634 44.216 -32.877 1.00 42.43 O
ATOM 9 C3' U B 17 -4.835 42.345 -31.412 1.00 40.72 C
ATOM 10 O3' U B 17 -4.917 42.763 -30.053 1.00 44.15 O
ATOM 11 C2' U B 17 -6.153 42.583 -32.140 1.00 40.74 C
ATOM 12 O2' U B 17 -7.269 42.449 -31.284 1.00 39.16 O
ATOM 13 C1' U B 17 -6.004 44.032 -32.589 1.00 40.16 C
ATOM 14 N1 U B 17 -6.790 44.324 -33.816 1.00 44.42 N
ATOM 15 C2 U B 17 -8.073 44.815 -33.691 1.00 41.16 C
ATOM 16 O2 U B 17 -8.601 45.031 -32.614 1.00 38.95 O
ATOM 17 N3 U B 17 -8.717 45.047 -34.880 1.00 43.53 N
ATOM 18 C4 U B 17 -8.216 44.839 -36.153 1.00 44.37 C
ATOM 19 O4 U B 17 -8.914 45.093 -37.128 1.00 47.18 O
ATOM 20 C5 U B 17 -6.873 44.321 -36.200 1.00 45.27 C
ATOM 21 C6 U B 17 -6.225 44.088 -35.053 1.00 42.34 C
ATOM 22 P U B 18 -3.813 42.292 -28.994 1.00 43.08 P
ATOM 23 OP1 U B 18 -3.653 43.392 -28.016 1.00 43.64 O
ATOM 24 OP2 U B 18 -2.637 41.804 -29.752 1.00 36.44 O
ATOM 25 O5' U B 18 -4.500 41.052 -28.245 1.00 42.76 O
TER
ATOM 2 P C A 19 -6.763 38.169 -24.280 1.00 42.42 P
ATOM 3 OP1 C A 19 -5.998 39.270 -23.650 1.00 45.16 O
ATOM 4 OP2 C A 19 -6.974 36.905 -23.543 1.00 40.19 O
ATOM 5 O5' C A 19 -8.194 38.737 -24.725 1.00 43.95 O
ATOM 6 C5' C A 19 -9.032 37.952 -25.568 1.00 43.43 C
ATOM 7 C4' C A 19 -10.463 38.460 -25.573 1.00 42.71 C
ATOM 8 O4' C A 19 -10.490 39.858 -25.959 1.00 37.13 O
ATOM 9 C3' C A 19 -11.376 37.759 -26.571 1.00 37.06 C
ATOM 10 O3' C A 19 -11.927 36.570 -25.999 1.00 36.26 O
ATOM 11 C2' C A 19 -12.442 38.826 -26.799 1.00 40.82 C
ATOM 12 O2' C A 19 -13.410 38.850 -25.768 1.00 39.86 O
ATOM 13 C1' C A 19 -11.619 40.113 -26.776 1.00 40.81 C
ATOM 14 N1 C A 19 -11.160 40.559 -28.133 1.00 41.07 N
ATOM 15 C2 C A 19 -12.105 40.906 -29.108 1.00 38.98 C
ATOM 16 O2 C A 19 -13.309 40.843 -28.835 1.00 36.85 O
ATOM 17 N3 C A 19 -11.675 41.304 -30.331 1.00 35.63 N
ATOM 18 C4 C A 19 -10.369 41.363 -30.595 1.00 36.59 C
ATOM 19 N4 C A 19 -9.997 41.761 -31.816 1.00 34.28 N
ATOM 20 C5 C A 19 -9.391 41.014 -29.615 1.00 35.58 C
ATOM 21 C6 C A 19 -9.825 40.623 -28.412 1.00 35.93 C
ATOM 22 P A A 20 -12.020 35.217 -26.858 1.00 42.80 P
ATOM 23 OP1 A A 20 -12.481 34.133 -25.960 1.00 47.39 O
ATOM 24 OP2 A A 20 -10.759 35.063 -27.615 1.00 42.55 O
ATOM 25 O5' A A 20 -13.197 35.525 -27.895 1.00 44.07 O
TER
ATOM 1 O3' G B 16 -2.593 40.411 -35.881 1.00 36.46 O
ATOM 2 P U B 17 -3.604 41.635 -35.651 1.00 50.54 P
ATOM 3 OP1 U B 17 -4.889 41.278 -36.295 1.00 43.78 O
ATOM 4 OP2 U B 17 -2.899 42.871 -36.053 1.00 46.30 O
ATOM 5 O5' U B 17 -3.853 41.680 -34.070 1.00 41.78 O
ATOM 6 C5' U B 17 -3.010 42.448 -33.216 1.00 43.49 C
ATOM 7 C4' U B 17 -3.845 43.205 -32.196 1.00 44.20 C
ATOM 8 O4' U B 17 -4.634 44.216 -32.877 1.00 42.43 O
ATOM 9 C3' U B 17 -4.835 42.345 -31.412 1.00 40.72 C
ATOM 10 O3' U B 17 -4.917 42.763 -30.053 1.00 44.15 O
ATOM 11 C2' U B 17 -6.153 42.583 -32.140 1.00 40.74 C
ATOM 12 O2' U B 17 -7.269 42.449 -31.284 1.00 39.16 O
ATOM 13 C1' U B 17 -6.004 44.032 -32.589 1.00 40.16 C
ATOM 14 N1 U B 17 -6.790 44.324 -33.816 1.00 44.42 N
ATOM 15 C2 U B 17 -8.073 44.815 -33.691 1.00 41.16 C
ATOM 16 O2 U B 17 -8.601 45.031 -32.614 1.00 38.95 O
ATOM 17 N3 U B 17 -8.717 45.047 -34.880 1.00 43.53 N
ATOM 18 C4 U B 17 -8.216 44.839 -36.153 1.00 44.37 C
ATOM 19 O4 U B 17 -8.914 45.093 -37.128 1.00 47.18 O
ATOM 20 C5 U B 17 -6.873 44.321 -36.200 1.00 45.27 C
ATOM 21 C6 U B 17 -6.225 44.088 -35.053 1.00 42.34 C
ATOM 22 P U B 18 -3.813 42.292 -28.994 1.00 43.08 P
ATOM 23 OP1 U B 18 -3.653 43.392 -28.016 1.00 43.64 O
ATOM 24 OP2 U B 18 -2.637 41.804 -29.752 1.00 36.44 O
ATOM 25 O5' U B 18 -4.500 41.052 -28.245 1.00 42.76 O
TER
Atoms:
C2: (-12.105,40.906,-29.108)
OP1: (-5.998,39.270,-23.650)
OP2: (-6.974,36.905,-23.543)
C4: (-10.369,41.363,-30.595)
O5': (-8.194,38.737,-24.725)
C3': (-11.376,37.759,-26.571)
C1': (-11.619,40.113,-26.776)
O4': (-10.490,39.858,-25.959)
C5': (-9.032,37.952,-25.568)
P: (-6.763,38.169,-24.280)
O2: (-13.309,40.843,-28.835)
C4': (-10.463,38.460,-25.573)
C2': (-12.442,38.826,-26.799)
O2': (-13.410,38.850,-25.768)
N1: (-11.160,40.559,-28.133)
N3: (-11.675,41.304,-30.331)
N4: (-9.997,41.761,-31.816)
C6: (-9.825,40.623,-28.412)
C5: (-9.391,41.014,-29.615)
O3': (-11.927,36.570,-25.999)
OP1: (-5.998,39.270,-23.650)
OP2: (-6.974,36.905,-23.543)
C4: (-10.369,41.363,-30.595)
O5': (-8.194,38.737,-24.725)
C3': (-11.376,37.759,-26.571)
C1': (-11.619,40.113,-26.776)
O4': (-10.490,39.858,-25.959)
C5': (-9.032,37.952,-25.568)
P: (-6.763,38.169,-24.280)
O2: (-13.309,40.843,-28.835)
C4': (-10.463,38.460,-25.573)
C2': (-12.442,38.826,-26.799)
O2': (-13.410,38.850,-25.768)
N1: (-11.160,40.559,-28.133)
N3: (-11.675,41.304,-30.331)
N4: (-9.997,41.761,-31.816)
C6: (-9.825,40.623,-28.412)
C5: (-9.391,41.014,-29.615)
O3': (-11.927,36.570,-25.999)
C4: (-8.216,44.839,-36.153)
N3: (-8.717,45.047,-34.880)
OP1: (-4.889,41.278,-36.295)
OP2: (-2.899,42.871,-36.053)
C2: (-8.073,44.815,-33.691)
C1': (-6.004,44.032,-32.589)
C3': (-4.835,42.345,-31.412)
O5': (-3.853,41.680,-34.070)
O4': (-4.634,44.216,-32.877)
C5': (-3.010,42.448,-33.216)
P: (-3.604,41.635,-35.651)
C4': (-3.845,43.205,-32.196)
C2': (-6.153,42.583,-32.140)
O2': (-7.269,42.449,-31.284)
N1: (-6.790,44.324,-33.816)
O4: (-8.914,45.093,-37.128)
O2: (-8.601,45.031,-32.614)
C6: (-6.225,44.088,-35.053)
C5: (-6.873,44.321,-36.200)
O3': (-4.917,42.763,-30.053)
N3: (-8.717,45.047,-34.880)
OP1: (-4.889,41.278,-36.295)
OP2: (-2.899,42.871,-36.053)
C2: (-8.073,44.815,-33.691)
C1': (-6.004,44.032,-32.589)
C3': (-4.835,42.345,-31.412)
O5': (-3.853,41.680,-34.070)
O4': (-4.634,44.216,-32.877)
C5': (-3.010,42.448,-33.216)
P: (-3.604,41.635,-35.651)
C4': (-3.845,43.205,-32.196)
C2': (-6.153,42.583,-32.140)
O2': (-7.269,42.449,-31.284)
N1: (-6.790,44.324,-33.816)
O4: (-8.914,45.093,-37.128)
O2: (-8.601,45.031,-32.614)
C6: (-6.225,44.088,-35.053)
C5: (-6.873,44.321,-36.200)
O3': (-4.917,42.763,-30.053)
Image (generated by PyMOL):