Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2V:B19:B17
Extra
PDB:
ATOM 1 O3' U A 18 -6.843 17.590 -0.306 1.00 38.51 O
ATOM 2 P C A 19 -7.459 17.091 -1.700 1.00 40.70 P
ATOM 3 OP1 C A 19 -6.476 16.186 -2.338 1.00 39.84 O
ATOM 4 OP2 C A 19 -7.935 18.286 -2.428 1.00 34.33 O
ATOM 5 O5' C A 19 -8.741 16.238 -1.259 1.00 42.50 O
ATOM 6 C5' C A 19 -9.780 16.890 -0.532 1.00 45.60 C
ATOM 7 C4' C A 19 -11.134 16.239 -0.750 1.00 43.60 C
ATOM 8 O4' C A 19 -11.052 14.821 -0.454 1.00 41.20 O
ATOM 9 C3' C A 19 -12.234 16.780 0.152 1.00 42.33 C
ATOM 10 O3' C A 19 -12.880 17.881 -0.473 1.00 45.28 O
ATOM 11 C2' C A 19 -13.170 15.582 0.271 1.00 45.60 C
ATOM 12 O2' C A 19 -14.043 15.469 -0.835 1.00 47.00 O
ATOM 13 C1' C A 19 -12.189 14.414 0.285 1.00 42.22 C
ATOM 14 N1 C A 19 -11.735 14.016 1.648 1.00 46.42 N
ATOM 15 C2 C A 19 -12.653 13.506 2.576 1.00 48.18 C
ATOM 16 O2 C A 19 -13.843 13.395 2.257 1.00 46.20 O
ATOM 17 N3 C A 19 -12.209 13.150 3.806 1.00 49.31 N
ATOM 18 C4 C A 19 -10.919 13.284 4.117 1.00 47.89 C
ATOM 19 N4 C A 19 -10.528 12.920 5.343 1.00 49.40 N
ATOM 20 C5 C A 19 -9.970 13.798 3.185 1.00 44.42 C
ATOM 21 C6 C A 19 -10.418 14.147 1.975 1.00 43.78 C
ATOM 22 P A A 20 -13.318 19.158 0.387 1.00 49.81 P
ATOM 23 OP1 A A 20 -13.910 20.147 -0.542 1.00 43.62 O
ATOM 24 OP2 A A 20 -12.176 19.545 1.246 1.00 49.76 O
ATOM 25 O5' A A 20 -14.489 18.584 1.313 1.00 44.69 O
TER
ATOM 1 O3' G B 16 -4.071 15.057 10.587 1.00 52.97 O
ATOM 2 P U B 17 -4.806 13.691 10.176 1.00 59.62 P
ATOM 3 OP1 U B 17 -6.249 13.971 10.008 1.00 48.96 O
ATOM 4 OP2 U B 17 -4.375 12.653 11.137 1.00 60.81 O
ATOM 5 O5' U B 17 -4.201 13.341 8.735 1.00 56.87 O
ATOM 6 C5' U B 17 -4.746 13.948 7.574 1.00 52.45 C
ATOM 7 C4' U B 17 -4.610 13.060 6.351 1.00 55.41 C
ATOM 8 O4' U B 17 -4.916 11.687 6.703 1.00 55.30 O
ATOM 9 C3' U B 17 -5.610 13.387 5.256 1.00 51.74 C
ATOM 10 O3' U B 17 -5.209 12.815 4.018 1.00 45.22 O
ATOM 11 C2' U B 17 -6.847 12.706 5.826 1.00 45.17 C
ATOM 12 O2' U B 17 -7.841 12.481 4.848 1.00 46.55 O
ATOM 13 C1' U B 17 -6.245 11.390 6.313 1.00 55.50 C
ATOM 14 N1 U B 17 -6.963 10.813 7.486 1.00 60.70 N
ATOM 15 C2 U B 17 -8.156 10.146 7.298 1.00 59.57 C
ATOM 16 O2 U B 17 -8.672 9.992 6.205 1.00 55.57 O
ATOM 17 N3 U B 17 -8.731 9.658 8.445 1.00 62.54 N
ATOM 18 C4 U B 17 -8.244 9.767 9.734 1.00 64.46 C
ATOM 19 O4 U B 17 -8.871 9.279 10.668 1.00 66.96 O
ATOM 20 C5 U B 17 -6.997 10.475 9.850 1.00 63.57 C
ATOM 21 C6 U B 17 -6.418 10.960 8.745 1.00 62.67 C
ATOM 22 P U B 18 -4.156 13.591 3.096 1.00 50.21 P
ATOM 23 OP1 U B 18 -3.620 12.634 2.102 1.00 53.50 O
ATOM 24 OP2 U B 18 -3.224 14.326 3.979 1.00 53.08 O
ATOM 25 O5' U B 18 -5.074 14.647 2.319 1.00 45.92 O
TER
ATOM 2 P C A 19 -7.459 17.091 -1.700 1.00 40.70 P
ATOM 3 OP1 C A 19 -6.476 16.186 -2.338 1.00 39.84 O
ATOM 4 OP2 C A 19 -7.935 18.286 -2.428 1.00 34.33 O
ATOM 5 O5' C A 19 -8.741 16.238 -1.259 1.00 42.50 O
ATOM 6 C5' C A 19 -9.780 16.890 -0.532 1.00 45.60 C
ATOM 7 C4' C A 19 -11.134 16.239 -0.750 1.00 43.60 C
ATOM 8 O4' C A 19 -11.052 14.821 -0.454 1.00 41.20 O
ATOM 9 C3' C A 19 -12.234 16.780 0.152 1.00 42.33 C
ATOM 10 O3' C A 19 -12.880 17.881 -0.473 1.00 45.28 O
ATOM 11 C2' C A 19 -13.170 15.582 0.271 1.00 45.60 C
ATOM 12 O2' C A 19 -14.043 15.469 -0.835 1.00 47.00 O
ATOM 13 C1' C A 19 -12.189 14.414 0.285 1.00 42.22 C
ATOM 14 N1 C A 19 -11.735 14.016 1.648 1.00 46.42 N
ATOM 15 C2 C A 19 -12.653 13.506 2.576 1.00 48.18 C
ATOM 16 O2 C A 19 -13.843 13.395 2.257 1.00 46.20 O
ATOM 17 N3 C A 19 -12.209 13.150 3.806 1.00 49.31 N
ATOM 18 C4 C A 19 -10.919 13.284 4.117 1.00 47.89 C
ATOM 19 N4 C A 19 -10.528 12.920 5.343 1.00 49.40 N
ATOM 20 C5 C A 19 -9.970 13.798 3.185 1.00 44.42 C
ATOM 21 C6 C A 19 -10.418 14.147 1.975 1.00 43.78 C
ATOM 22 P A A 20 -13.318 19.158 0.387 1.00 49.81 P
ATOM 23 OP1 A A 20 -13.910 20.147 -0.542 1.00 43.62 O
ATOM 24 OP2 A A 20 -12.176 19.545 1.246 1.00 49.76 O
ATOM 25 O5' A A 20 -14.489 18.584 1.313 1.00 44.69 O
TER
ATOM 1 O3' G B 16 -4.071 15.057 10.587 1.00 52.97 O
ATOM 2 P U B 17 -4.806 13.691 10.176 1.00 59.62 P
ATOM 3 OP1 U B 17 -6.249 13.971 10.008 1.00 48.96 O
ATOM 4 OP2 U B 17 -4.375 12.653 11.137 1.00 60.81 O
ATOM 5 O5' U B 17 -4.201 13.341 8.735 1.00 56.87 O
ATOM 6 C5' U B 17 -4.746 13.948 7.574 1.00 52.45 C
ATOM 7 C4' U B 17 -4.610 13.060 6.351 1.00 55.41 C
ATOM 8 O4' U B 17 -4.916 11.687 6.703 1.00 55.30 O
ATOM 9 C3' U B 17 -5.610 13.387 5.256 1.00 51.74 C
ATOM 10 O3' U B 17 -5.209 12.815 4.018 1.00 45.22 O
ATOM 11 C2' U B 17 -6.847 12.706 5.826 1.00 45.17 C
ATOM 12 O2' U B 17 -7.841 12.481 4.848 1.00 46.55 O
ATOM 13 C1' U B 17 -6.245 11.390 6.313 1.00 55.50 C
ATOM 14 N1 U B 17 -6.963 10.813 7.486 1.00 60.70 N
ATOM 15 C2 U B 17 -8.156 10.146 7.298 1.00 59.57 C
ATOM 16 O2 U B 17 -8.672 9.992 6.205 1.00 55.57 O
ATOM 17 N3 U B 17 -8.731 9.658 8.445 1.00 62.54 N
ATOM 18 C4 U B 17 -8.244 9.767 9.734 1.00 64.46 C
ATOM 19 O4 U B 17 -8.871 9.279 10.668 1.00 66.96 O
ATOM 20 C5 U B 17 -6.997 10.475 9.850 1.00 63.57 C
ATOM 21 C6 U B 17 -6.418 10.960 8.745 1.00 62.67 C
ATOM 22 P U B 18 -4.156 13.591 3.096 1.00 50.21 P
ATOM 23 OP1 U B 18 -3.620 12.634 2.102 1.00 53.50 O
ATOM 24 OP2 U B 18 -3.224 14.326 3.979 1.00 53.08 O
ATOM 25 O5' U B 18 -5.074 14.647 2.319 1.00 45.92 O
TER
Atoms:
C2: (-12.653,13.506,2.576)
OP1: (-6.476,16.186,-2.338)
OP2: (-7.935,18.286,-2.428)
C4: (-10.919,13.284,4.117)
O5': (-8.741,16.238,-1.259)
C3': (-12.234,16.780,0.152)
C1': (-12.189,14.414,0.285)
O4': (-11.052,14.821,-0.454)
C5': (-9.780,16.890,-0.532)
P: (-7.459,17.091,-1.700)
O2: (-13.843,13.395,2.257)
C4': (-11.134,16.239,-0.750)
C2': (-13.170,15.582,0.271)
O2': (-14.043,15.469,-0.835)
N1: (-11.735,14.016,1.648)
N3: (-12.209,13.150,3.806)
N4: (-10.528,12.920,5.343)
C6: (-10.418,14.147,1.975)
C5: (-9.970,13.798,3.185)
O3': (-12.880,17.881,-0.473)
OP1: (-6.476,16.186,-2.338)
OP2: (-7.935,18.286,-2.428)
C4: (-10.919,13.284,4.117)
O5': (-8.741,16.238,-1.259)
C3': (-12.234,16.780,0.152)
C1': (-12.189,14.414,0.285)
O4': (-11.052,14.821,-0.454)
C5': (-9.780,16.890,-0.532)
P: (-7.459,17.091,-1.700)
O2: (-13.843,13.395,2.257)
C4': (-11.134,16.239,-0.750)
C2': (-13.170,15.582,0.271)
O2': (-14.043,15.469,-0.835)
N1: (-11.735,14.016,1.648)
N3: (-12.209,13.150,3.806)
N4: (-10.528,12.920,5.343)
C6: (-10.418,14.147,1.975)
C5: (-9.970,13.798,3.185)
O3': (-12.880,17.881,-0.473)
C4: (-8.244,9.767,9.734)
N3: (-8.731,9.658,8.445)
OP1: (-6.249,13.971,10.008)
OP2: (-4.375,12.653,11.137)
C2: (-8.156,10.146,7.298)
C1': (-6.245,11.390,6.313)
C3': (-5.610,13.387,5.256)
O5': (-4.201,13.341,8.735)
O4': (-4.916,11.687,6.703)
C5': (-4.746,13.948,7.574)
P: (-4.806,13.691,10.176)
C4': (-4.610,13.060,6.351)
C2': (-6.847,12.706,5.826)
O2': (-7.841,12.481,4.848)
N1: (-6.963,10.813,7.486)
O4: (-8.871,9.279,10.668)
O2: (-8.672,9.992,6.205)
C6: (-6.418,10.960,8.745)
C5: (-6.997,10.475,9.850)
O3': (-5.209,12.815,4.018)
N3: (-8.731,9.658,8.445)
OP1: (-6.249,13.971,10.008)
OP2: (-4.375,12.653,11.137)
C2: (-8.156,10.146,7.298)
C1': (-6.245,11.390,6.313)
C3': (-5.610,13.387,5.256)
O5': (-4.201,13.341,8.735)
O4': (-4.916,11.687,6.703)
C5': (-4.746,13.948,7.574)
P: (-4.806,13.691,10.176)
C4': (-4.610,13.060,6.351)
C2': (-6.847,12.706,5.826)
O2': (-7.841,12.481,4.848)
N1: (-6.963,10.813,7.486)
O4: (-8.871,9.279,10.668)
O2: (-8.672,9.992,6.205)
C6: (-6.418,10.960,8.745)
C5: (-6.997,10.475,9.850)
O3': (-5.209,12.815,4.018)
Image (generated by PyMOL):