Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12497:12500
Extra
PDB:
ATOM 1 O3' U A2496 18.521 -81.965 52.540 1.00 61.74 O
ATOM 2 P G A2497 18.060 -83.477 52.252 1.00 56.94 P
ATOM 3 OP1 G A2497 16.659 -83.417 51.857 1.00 57.10 O
ATOM 4 OP2 G A2497 18.442 -84.300 53.434 1.00 57.15 O
ATOM 5 O5' G A2497 18.942 -83.887 51.010 1.00 57.21 O
ATOM 6 C5' G A2497 18.729 -83.259 49.773 1.00 57.11 C
ATOM 7 C4' G A2497 19.923 -83.376 48.879 1.00 57.19 C
ATOM 8 O4' G A2497 21.053 -82.676 49.447 1.00 56.68 O
ATOM 9 C3' G A2497 20.468 -84.765 48.647 1.00 57.83 C
ATOM 10 O3' G A2497 19.645 -85.553 47.794 1.00 58.40 O
ATOM 11 C2' G A2497 21.824 -84.433 48.048 1.00 57.64 C
ATOM 12 O2' G A2497 21.689 -84.057 46.689 1.00 57.69 O
ATOM 13 C1' G A2497 22.230 -83.194 48.878 1.00 56.91 C
ATOM 14 N9 G A2497 23.151 -83.596 49.931 1.00 56.88 N
ATOM 15 C8 G A2497 22.902 -84.176 51.141 1.00 57.00 C
ATOM 16 N7 G A2497 24.000 -84.566 51.740 1.00 57.03 N
ATOM 17 C5 G A2497 25.002 -84.259 50.821 1.00 56.94 C
ATOM 18 C6 G A2497 26.402 -84.462 50.875 1.00 56.94 C
ATOM 19 O6 G A2497 27.042 -84.977 51.799 1.00 57.04 O
ATOM 20 N1 G A2497 27.047 -84.015 49.720 1.00 56.85 N
ATOM 21 C2 G A2497 26.424 -83.443 48.644 1.00 56.77 C
ATOM 22 N2 G A2497 27.219 -83.084 47.628 1.00 56.70 N
ATOM 23 N3 G A2497 25.110 -83.253 48.577 1.00 56.77 N
ATOM 24 C4 G A2497 24.484 -83.686 49.692 1.00 56.86 C
ATOM 25 P A A2498 19.401 -87.124 48.094 1.00 59.34 P
ATOM 26 OP1 A A2498 18.397 -87.593 47.120 1.00 59.82 O
ATOM 27 OP2 A A2498 19.103 -87.267 49.558 1.00 59.22 O
ATOM 28 O5' A A2498 20.798 -87.785 47.757 1.00 59.59 O
TER
ATOM 1 O3' A B2499 29.786 -86.603 46.775 1.00 62.41 O
ATOM 2 P A B2500 30.487 -85.430 47.640 1.00 54.79 P
ATOM 3 OP1 A B2500 31.641 -86.053 48.347 1.00 54.95 O
ATOM 4 OP2 A B2500 29.418 -84.771 48.452 1.00 54.40 O
ATOM 5 O5' A B2500 31.022 -84.450 46.509 1.00 54.47 O
ATOM 6 C5' A B2500 31.924 -84.936 45.525 1.00 54.82 C
ATOM 7 C4' A B2500 32.036 -84.015 44.334 1.00 54.57 C
ATOM 8 O4' A B2500 30.805 -84.013 43.582 1.00 54.75 O
ATOM 9 C3' A B2500 32.290 -82.559 44.644 1.00 53.82 C
ATOM 10 O3' A B2500 33.646 -82.309 44.913 1.00 53.62 O
ATOM 11 C2' A B2500 31.771 -81.853 43.404 1.00 53.72 C
ATOM 12 O2' A B2500 32.726 -81.922 42.360 1.00 53.90 O
ATOM 13 C1' A B2500 30.583 -82.737 43.023 1.00 54.25 C
ATOM 14 N9 A B2500 29.314 -82.232 43.558 1.00 53.98 N
ATOM 15 C8 A B2500 28.894 -82.497 44.830 1.00 53.91 C
ATOM 16 N7 A B2500 27.735 -81.984 45.111 1.00 53.69 N
ATOM 17 C5 A B2500 27.347 -81.375 43.933 1.00 53.63 C
ATOM 18 C6 A B2500 26.178 -80.676 43.634 1.00 53.44 C
ATOM 19 N6 A B2500 25.210 -80.487 44.538 1.00 53.26 N
ATOM 20 N1 A B2500 26.080 -80.178 42.391 1.00 53.44 N
ATOM 21 C2 A B2500 27.096 -80.435 41.554 1.00 53.65 C
ATOM 22 N3 A B2500 28.241 -81.088 41.716 1.00 53.85 N
ATOM 23 C4 A B2500 28.307 -81.529 42.959 1.00 53.82 C
ATOM 24 P G B2501 34.059 -81.397 46.165 1.00 55.43 P
ATOM 25 OP1 G B2501 35.547 -81.443 46.273 1.00 55.40 O
ATOM 26 OP2 G B2501 33.227 -81.829 47.332 1.00 55.48 O
ATOM 27 O5' G B2501 33.614 -79.968 45.679 1.00 54.87 O
TER
ATOM 2 P G A2497 18.060 -83.477 52.252 1.00 56.94 P
ATOM 3 OP1 G A2497 16.659 -83.417 51.857 1.00 57.10 O
ATOM 4 OP2 G A2497 18.442 -84.300 53.434 1.00 57.15 O
ATOM 5 O5' G A2497 18.942 -83.887 51.010 1.00 57.21 O
ATOM 6 C5' G A2497 18.729 -83.259 49.773 1.00 57.11 C
ATOM 7 C4' G A2497 19.923 -83.376 48.879 1.00 57.19 C
ATOM 8 O4' G A2497 21.053 -82.676 49.447 1.00 56.68 O
ATOM 9 C3' G A2497 20.468 -84.765 48.647 1.00 57.83 C
ATOM 10 O3' G A2497 19.645 -85.553 47.794 1.00 58.40 O
ATOM 11 C2' G A2497 21.824 -84.433 48.048 1.00 57.64 C
ATOM 12 O2' G A2497 21.689 -84.057 46.689 1.00 57.69 O
ATOM 13 C1' G A2497 22.230 -83.194 48.878 1.00 56.91 C
ATOM 14 N9 G A2497 23.151 -83.596 49.931 1.00 56.88 N
ATOM 15 C8 G A2497 22.902 -84.176 51.141 1.00 57.00 C
ATOM 16 N7 G A2497 24.000 -84.566 51.740 1.00 57.03 N
ATOM 17 C5 G A2497 25.002 -84.259 50.821 1.00 56.94 C
ATOM 18 C6 G A2497 26.402 -84.462 50.875 1.00 56.94 C
ATOM 19 O6 G A2497 27.042 -84.977 51.799 1.00 57.04 O
ATOM 20 N1 G A2497 27.047 -84.015 49.720 1.00 56.85 N
ATOM 21 C2 G A2497 26.424 -83.443 48.644 1.00 56.77 C
ATOM 22 N2 G A2497 27.219 -83.084 47.628 1.00 56.70 N
ATOM 23 N3 G A2497 25.110 -83.253 48.577 1.00 56.77 N
ATOM 24 C4 G A2497 24.484 -83.686 49.692 1.00 56.86 C
ATOM 25 P A A2498 19.401 -87.124 48.094 1.00 59.34 P
ATOM 26 OP1 A A2498 18.397 -87.593 47.120 1.00 59.82 O
ATOM 27 OP2 A A2498 19.103 -87.267 49.558 1.00 59.22 O
ATOM 28 O5' A A2498 20.798 -87.785 47.757 1.00 59.59 O
TER
ATOM 1 O3' A B2499 29.786 -86.603 46.775 1.00 62.41 O
ATOM 2 P A B2500 30.487 -85.430 47.640 1.00 54.79 P
ATOM 3 OP1 A B2500 31.641 -86.053 48.347 1.00 54.95 O
ATOM 4 OP2 A B2500 29.418 -84.771 48.452 1.00 54.40 O
ATOM 5 O5' A B2500 31.022 -84.450 46.509 1.00 54.47 O
ATOM 6 C5' A B2500 31.924 -84.936 45.525 1.00 54.82 C
ATOM 7 C4' A B2500 32.036 -84.015 44.334 1.00 54.57 C
ATOM 8 O4' A B2500 30.805 -84.013 43.582 1.00 54.75 O
ATOM 9 C3' A B2500 32.290 -82.559 44.644 1.00 53.82 C
ATOM 10 O3' A B2500 33.646 -82.309 44.913 1.00 53.62 O
ATOM 11 C2' A B2500 31.771 -81.853 43.404 1.00 53.72 C
ATOM 12 O2' A B2500 32.726 -81.922 42.360 1.00 53.90 O
ATOM 13 C1' A B2500 30.583 -82.737 43.023 1.00 54.25 C
ATOM 14 N9 A B2500 29.314 -82.232 43.558 1.00 53.98 N
ATOM 15 C8 A B2500 28.894 -82.497 44.830 1.00 53.91 C
ATOM 16 N7 A B2500 27.735 -81.984 45.111 1.00 53.69 N
ATOM 17 C5 A B2500 27.347 -81.375 43.933 1.00 53.63 C
ATOM 18 C6 A B2500 26.178 -80.676 43.634 1.00 53.44 C
ATOM 19 N6 A B2500 25.210 -80.487 44.538 1.00 53.26 N
ATOM 20 N1 A B2500 26.080 -80.178 42.391 1.00 53.44 N
ATOM 21 C2 A B2500 27.096 -80.435 41.554 1.00 53.65 C
ATOM 22 N3 A B2500 28.241 -81.088 41.716 1.00 53.85 N
ATOM 23 C4 A B2500 28.307 -81.529 42.959 1.00 53.82 C
ATOM 24 P G B2501 34.059 -81.397 46.165 1.00 55.43 P
ATOM 25 OP1 G B2501 35.547 -81.443 46.273 1.00 55.40 O
ATOM 26 OP2 G B2501 33.227 -81.829 47.332 1.00 55.48 O
ATOM 27 O5' G B2501 33.614 -79.968 45.679 1.00 54.87 O
TER
Atoms:
OP1: (16.659,-83.417,51.857)
OP2: (18.442,-84.300,53.434)
C3': (20.468,-84.765,48.647)
C1': (22.230,-83.194,48.878)
C5': (18.729,-83.259,49.773)
O6: (27.042,-84.977,51.799)
O4': (21.053,-82.676,49.447)
C8: (22.902,-84.176,51.141)
C2: (26.424,-83.443,48.644)
C6: (26.402,-84.462,50.875)
C5: (25.002,-84.259,50.821)
C4: (24.484,-83.686,49.692)
P: (18.060,-83.477,52.252)
C4': (19.923,-83.376,48.879)
C2': (21.824,-84.433,48.048)
O2': (21.689,-84.057,46.689)
N1: (27.047,-84.015,49.720)
N2: (27.219,-83.084,47.628)
N3: (25.110,-83.253,48.577)
N7: (24.000,-84.566,51.740)
N9: (23.151,-83.596,49.931)
O5': (18.942,-83.887,51.010)
O3': (19.645,-85.553,47.794)
OP2: (18.442,-84.300,53.434)
C3': (20.468,-84.765,48.647)
C1': (22.230,-83.194,48.878)
C5': (18.729,-83.259,49.773)
O6: (27.042,-84.977,51.799)
O4': (21.053,-82.676,49.447)
C8: (22.902,-84.176,51.141)
C2: (26.424,-83.443,48.644)
C6: (26.402,-84.462,50.875)
C5: (25.002,-84.259,50.821)
C4: (24.484,-83.686,49.692)
P: (18.060,-83.477,52.252)
C4': (19.923,-83.376,48.879)
C2': (21.824,-84.433,48.048)
O2': (21.689,-84.057,46.689)
N1: (27.047,-84.015,49.720)
N2: (27.219,-83.084,47.628)
N3: (25.110,-83.253,48.577)
N7: (24.000,-84.566,51.740)
N9: (23.151,-83.596,49.931)
O5': (18.942,-83.887,51.010)
O3': (19.645,-85.553,47.794)
OP1: (31.641,-86.053,48.347)
OP2: (29.418,-84.771,48.452)
C3': (32.290,-82.559,44.644)
C1': (30.583,-82.737,43.023)
C5': (31.924,-84.936,45.525)
O4': (30.805,-84.013,43.582)
C8: (28.894,-82.497,44.830)
O2': (32.726,-81.922,42.360)
C6: (26.178,-80.676,43.634)
C5: (27.347,-81.375,43.933)
C4: (28.307,-81.529,42.959)
P: (30.487,-85.430,47.640)
C4': (32.036,-84.015,44.334)
C2': (31.771,-81.853,43.404)
C2: (27.096,-80.435,41.554)
N1: (26.080,-80.178,42.391)
N3: (28.241,-81.088,41.716)
N6: (25.210,-80.487,44.538)
N7: (27.735,-81.984,45.111)
N9: (29.314,-82.232,43.558)
O5': (31.022,-84.450,46.509)
O3': (33.646,-82.309,44.913)
OP2: (29.418,-84.771,48.452)
C3': (32.290,-82.559,44.644)
C1': (30.583,-82.737,43.023)
C5': (31.924,-84.936,45.525)
O4': (30.805,-84.013,43.582)
C8: (28.894,-82.497,44.830)
O2': (32.726,-81.922,42.360)
C6: (26.178,-80.676,43.634)
C5: (27.347,-81.375,43.933)
C4: (28.307,-81.529,42.959)
P: (30.487,-85.430,47.640)
C4': (32.036,-84.015,44.334)
C2': (31.771,-81.853,43.404)
C2: (27.096,-80.435,41.554)
N1: (26.080,-80.178,42.391)
N3: (28.241,-81.088,41.716)
N6: (25.210,-80.487,44.538)
N7: (27.735,-81.984,45.111)
N9: (29.314,-82.232,43.558)
O5': (31.022,-84.450,46.509)
O3': (33.646,-82.309,44.913)
Image (generated by PyMOL):