Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12622:12570
Extra
PDB:
ATOM 1 O3' U A2621 38.332 0.591 61.307 1.00 38.54 O
ATOM 2 P C A2622 38.781 -0.504 62.381 1.00 55.35 P
ATOM 3 OP1 C A2622 39.761 0.129 63.267 1.00 55.35 O
ATOM 4 OP2 C A2622 39.197 -1.713 61.627 1.00 55.30 O
ATOM 5 O5' C A2622 37.446 -0.800 63.171 1.00 55.36 O
ATOM 6 C5' C A2622 37.040 0.006 64.249 1.00 55.40 C
ATOM 7 C4' C A2622 35.979 -0.684 65.081 1.00 55.39 C
ATOM 8 O4' C A2622 35.056 -1.425 64.237 1.00 55.39 O
ATOM 9 C3' C A2622 36.467 -1.720 66.088 1.00 55.32 C
ATOM 10 O3' C A2622 36.991 -1.123 67.314 1.00 55.34 O
ATOM 11 C2' C A2622 35.224 -2.638 66.283 1.00 55.32 C
ATOM 12 O2' C A2622 34.495 -2.296 67.452 1.00 55.37 O
ATOM 13 C1' C A2622 34.353 -2.322 65.054 1.00 55.37 C
ATOM 14 N1 C A2622 33.918 -3.529 64.289 1.00 55.35 N
ATOM 15 C2 C A2622 32.546 -3.525 64.134 1.00 55.42 C
ATOM 16 O2 C A2622 31.939 -2.554 64.579 1.00 55.48 O
ATOM 17 N3 C A2622 31.918 -4.534 63.485 1.00 55.43 N
ATOM 18 C4 C A2622 32.596 -5.567 63.041 1.00 55.37 C
ATOM 19 N4 C A2622 31.821 -6.440 62.448 1.00 55.41 N
ATOM 20 C5 C A2622 34.011 -5.690 63.169 1.00 55.30 C
ATOM 21 C6 C A2622 34.605 -4.639 63.800 1.00 55.30 C
ATOM 22 P G A2623 38.471 -1.542 67.928 1.00 87.03 P
ATOM 23 OP1 G A2623 39.441 -1.584 66.798 1.00 87.00 O
ATOM 24 OP2 G A2623 38.278 -2.782 68.777 1.00 87.00 O
ATOM 25 O5' G A2623 38.816 -0.320 68.879 1.00 87.11 O
TER
ATOM 1 O3' A B2569 34.836 -13.314 58.898 1.00 35.58 O
ATOM 2 P U B2570 34.118 -12.670 57.597 1.00 39.78 P
ATOM 3 OP1 U B2570 34.703 -13.376 56.429 1.00 39.84 O
ATOM 4 OP2 U B2570 34.220 -11.187 57.670 1.00 39.74 O
ATOM 5 O5' U B2570 32.589 -13.052 57.742 1.00 39.85 O
ATOM 6 C5' U B2570 31.923 -12.871 58.959 1.00 39.81 C
ATOM 7 C4' U B2570 30.867 -11.790 58.956 1.00 39.85 C
ATOM 8 O4' U B2570 30.393 -11.759 60.299 1.00 39.81 O
ATOM 9 C3' U B2570 31.371 -10.369 58.746 1.00 39.81 C
ATOM 10 O3' U B2570 30.244 -9.431 58.715 1.00 39.88 O
ATOM 11 C2' U B2570 32.129 -10.178 60.060 1.00 39.71 C
ATOM 12 O2' U B2570 32.415 -8.838 60.390 1.00 39.68 O
ATOM 13 C1' U B2570 31.159 -10.819 61.049 1.00 39.73 C
ATOM 14 N1 U B2570 31.825 -11.547 62.146 1.00 39.67 N
ATOM 15 C2 U B2570 31.644 -11.064 63.399 1.00 39.64 C
ATOM 16 O2 U B2570 30.995 -10.104 63.612 1.00 39.66 O
ATOM 17 N3 U B2570 32.314 -11.704 64.390 1.00 39.59 N
ATOM 18 C4 U B2570 33.159 -12.809 64.249 1.00 39.58 C
ATOM 19 O4 U B2570 33.689 -13.315 65.266 1.00 39.56 O
ATOM 20 C5 U B2570 33.298 -13.282 62.895 1.00 39.61 C
ATOM 21 C6 U B2570 32.641 -12.640 61.943 1.00 39.65 C
ATOM 22 P A B2571 29.909 -8.468 57.430 1.00 45.42 P
ATOM 23 OP1 A B2571 29.992 -9.310 56.219 1.00 45.49 O
ATOM 24 OP2 A B2571 30.771 -7.270 57.498 1.00 45.37 O
ATOM 25 O5' A B2571 28.360 -8.047 57.719 1.00 45.51 O
TER
ATOM 2 P C A2622 38.781 -0.504 62.381 1.00 55.35 P
ATOM 3 OP1 C A2622 39.761 0.129 63.267 1.00 55.35 O
ATOM 4 OP2 C A2622 39.197 -1.713 61.627 1.00 55.30 O
ATOM 5 O5' C A2622 37.446 -0.800 63.171 1.00 55.36 O
ATOM 6 C5' C A2622 37.040 0.006 64.249 1.00 55.40 C
ATOM 7 C4' C A2622 35.979 -0.684 65.081 1.00 55.39 C
ATOM 8 O4' C A2622 35.056 -1.425 64.237 1.00 55.39 O
ATOM 9 C3' C A2622 36.467 -1.720 66.088 1.00 55.32 C
ATOM 10 O3' C A2622 36.991 -1.123 67.314 1.00 55.34 O
ATOM 11 C2' C A2622 35.224 -2.638 66.283 1.00 55.32 C
ATOM 12 O2' C A2622 34.495 -2.296 67.452 1.00 55.37 O
ATOM 13 C1' C A2622 34.353 -2.322 65.054 1.00 55.37 C
ATOM 14 N1 C A2622 33.918 -3.529 64.289 1.00 55.35 N
ATOM 15 C2 C A2622 32.546 -3.525 64.134 1.00 55.42 C
ATOM 16 O2 C A2622 31.939 -2.554 64.579 1.00 55.48 O
ATOM 17 N3 C A2622 31.918 -4.534 63.485 1.00 55.43 N
ATOM 18 C4 C A2622 32.596 -5.567 63.041 1.00 55.37 C
ATOM 19 N4 C A2622 31.821 -6.440 62.448 1.00 55.41 N
ATOM 20 C5 C A2622 34.011 -5.690 63.169 1.00 55.30 C
ATOM 21 C6 C A2622 34.605 -4.639 63.800 1.00 55.30 C
ATOM 22 P G A2623 38.471 -1.542 67.928 1.00 87.03 P
ATOM 23 OP1 G A2623 39.441 -1.584 66.798 1.00 87.00 O
ATOM 24 OP2 G A2623 38.278 -2.782 68.777 1.00 87.00 O
ATOM 25 O5' G A2623 38.816 -0.320 68.879 1.00 87.11 O
TER
ATOM 1 O3' A B2569 34.836 -13.314 58.898 1.00 35.58 O
ATOM 2 P U B2570 34.118 -12.670 57.597 1.00 39.78 P
ATOM 3 OP1 U B2570 34.703 -13.376 56.429 1.00 39.84 O
ATOM 4 OP2 U B2570 34.220 -11.187 57.670 1.00 39.74 O
ATOM 5 O5' U B2570 32.589 -13.052 57.742 1.00 39.85 O
ATOM 6 C5' U B2570 31.923 -12.871 58.959 1.00 39.81 C
ATOM 7 C4' U B2570 30.867 -11.790 58.956 1.00 39.85 C
ATOM 8 O4' U B2570 30.393 -11.759 60.299 1.00 39.81 O
ATOM 9 C3' U B2570 31.371 -10.369 58.746 1.00 39.81 C
ATOM 10 O3' U B2570 30.244 -9.431 58.715 1.00 39.88 O
ATOM 11 C2' U B2570 32.129 -10.178 60.060 1.00 39.71 C
ATOM 12 O2' U B2570 32.415 -8.838 60.390 1.00 39.68 O
ATOM 13 C1' U B2570 31.159 -10.819 61.049 1.00 39.73 C
ATOM 14 N1 U B2570 31.825 -11.547 62.146 1.00 39.67 N
ATOM 15 C2 U B2570 31.644 -11.064 63.399 1.00 39.64 C
ATOM 16 O2 U B2570 30.995 -10.104 63.612 1.00 39.66 O
ATOM 17 N3 U B2570 32.314 -11.704 64.390 1.00 39.59 N
ATOM 18 C4 U B2570 33.159 -12.809 64.249 1.00 39.58 C
ATOM 19 O4 U B2570 33.689 -13.315 65.266 1.00 39.56 O
ATOM 20 C5 U B2570 33.298 -13.282 62.895 1.00 39.61 C
ATOM 21 C6 U B2570 32.641 -12.640 61.943 1.00 39.65 C
ATOM 22 P A B2571 29.909 -8.468 57.430 1.00 45.42 P
ATOM 23 OP1 A B2571 29.992 -9.310 56.219 1.00 45.49 O
ATOM 24 OP2 A B2571 30.771 -7.270 57.498 1.00 45.37 O
ATOM 25 O5' A B2571 28.360 -8.047 57.719 1.00 45.51 O
TER
Atoms:
C2: (32.546,-3.525,64.134)
OP1: (39.761,0.129,63.267)
OP2: (39.197,-1.713,61.627)
C4: (32.596,-5.567,63.041)
O5': (37.446,-0.800,63.171)
C3': (36.467,-1.720,66.088)
C1': (34.353,-2.322,65.054)
O4': (35.056,-1.425,64.237)
C5': (37.040,0.006,64.249)
P: (38.781,-0.504,62.381)
O2: (31.939,-2.554,64.579)
C4': (35.979,-0.684,65.081)
C2': (35.224,-2.638,66.283)
O2': (34.495,-2.296,67.452)
N1: (33.918,-3.529,64.289)
N3: (31.918,-4.534,63.485)
N4: (31.821,-6.440,62.448)
C6: (34.605,-4.639,63.800)
C5: (34.011,-5.690,63.169)
O3': (36.991,-1.123,67.314)
OP1: (39.761,0.129,63.267)
OP2: (39.197,-1.713,61.627)
C4: (32.596,-5.567,63.041)
O5': (37.446,-0.800,63.171)
C3': (36.467,-1.720,66.088)
C1': (34.353,-2.322,65.054)
O4': (35.056,-1.425,64.237)
C5': (37.040,0.006,64.249)
P: (38.781,-0.504,62.381)
O2: (31.939,-2.554,64.579)
C4': (35.979,-0.684,65.081)
C2': (35.224,-2.638,66.283)
O2': (34.495,-2.296,67.452)
N1: (33.918,-3.529,64.289)
N3: (31.918,-4.534,63.485)
N4: (31.821,-6.440,62.448)
C6: (34.605,-4.639,63.800)
C5: (34.011,-5.690,63.169)
O3': (36.991,-1.123,67.314)
C4: (33.159,-12.809,64.249)
N3: (32.314,-11.704,64.390)
OP1: (34.703,-13.376,56.429)
OP2: (34.220,-11.187,57.670)
C2: (31.644,-11.064,63.399)
C1': (31.159,-10.819,61.049)
C3': (31.371,-10.369,58.746)
O5': (32.589,-13.052,57.742)
O4': (30.393,-11.759,60.299)
C5': (31.923,-12.871,58.959)
P: (34.118,-12.670,57.597)
C4': (30.867,-11.790,58.956)
C2': (32.129,-10.178,60.060)
O2': (32.415,-8.838,60.390)
N1: (31.825,-11.547,62.146)
O4: (33.689,-13.315,65.266)
O2: (30.995,-10.104,63.612)
C6: (32.641,-12.640,61.943)
C5: (33.298,-13.282,62.895)
O3': (30.244,-9.431,58.715)
N3: (32.314,-11.704,64.390)
OP1: (34.703,-13.376,56.429)
OP2: (34.220,-11.187,57.670)
C2: (31.644,-11.064,63.399)
C1': (31.159,-10.819,61.049)
C3': (31.371,-10.369,58.746)
O5': (32.589,-13.052,57.742)
O4': (30.393,-11.759,60.299)
C5': (31.923,-12.871,58.959)
P: (34.118,-12.670,57.597)
C4': (30.867,-11.790,58.956)
C2': (32.129,-10.178,60.060)
O2': (32.415,-8.838,60.390)
N1: (31.825,-11.547,62.146)
O4: (33.689,-13.315,65.266)
O2: (30.995,-10.104,63.612)
C6: (32.641,-12.640,61.943)
C5: (33.298,-13.282,62.895)
O3': (30.244,-9.431,58.715)
Image (generated by PyMOL):