Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:166:1311
Extra
PDB:
ATOM 1 O3' C A 65 53.816 -50.245 114.637 1.00 47.58 O
ATOM 2 P C A 66 53.408 -51.303 113.511 1.00 48.30 P
ATOM 3 OP1 C A 66 52.690 -50.560 112.471 1.00 47.73 O
ATOM 4 OP2 C A 66 52.732 -52.413 114.164 1.00 48.71 O
ATOM 5 O5' C A 66 54.808 -51.769 112.968 1.00 48.40 O
ATOM 6 C5' C A 66 55.631 -50.859 112.265 1.00 48.05 C
ATOM 7 C4' C A 66 56.953 -51.465 111.915 1.00 48.25 C
ATOM 8 O4' C A 66 57.584 -52.000 113.108 1.00 48.81 O
ATOM 9 C3' C A 66 56.924 -52.657 110.971 1.00 48.29 C
ATOM 10 O3' C A 66 56.722 -52.290 109.625 1.00 47.79 O
ATOM 11 C2' C A 66 58.287 -53.242 111.217 1.00 48.67 C
ATOM 12 O2' C A 66 59.268 -52.391 110.638 1.00 48.40 O
ATOM 13 C1' C A 66 58.396 -53.095 112.736 1.00 49.09 C
ATOM 14 N1 C A 66 57.951 -54.296 113.461 1.00 49.58 N
ATOM 15 C2 C A 66 58.805 -55.401 113.470 1.00 49.99 C
ATOM 16 O2 C A 66 59.860 -55.318 112.836 1.00 49.92 O
ATOM 17 N3 C A 66 58.450 -56.521 114.163 1.00 50.48 N
ATOM 18 C4 C A 66 57.289 -56.552 114.837 1.00 50.55 C
ATOM 19 N4 C A 66 56.942 -57.648 115.524 1.00 51.04 N
ATOM 20 C5 C A 66 56.430 -55.424 114.843 1.00 50.13 C
ATOM 21 C6 C A 66 56.793 -54.330 114.164 1.00 49.66 C
ATOM 22 P A A 67 56.136 -53.352 108.576 1.00 46.97 P
ATOM 23 OP1 A A 67 55.784 -52.610 107.351 1.00 46.41 O
ATOM 24 OP2 A A 67 55.081 -54.108 109.277 1.00 47.25 O
ATOM 25 O5' A A 67 57.386 -54.269 108.282 1.00 47.28 O
TER
ATOM 1 O3' A B 310 56.434 -64.678 117.051 1.00 53.38 O
ATOM 2 P U B 311 56.936 -64.040 118.426 1.00 52.11 P
ATOM 3 OP1 U B 311 58.409 -63.970 118.345 1.00 52.25 O
ATOM 4 OP2 U B 311 56.301 -64.785 119.549 1.00 52.66 O
ATOM 5 O5' U B 311 56.350 -62.589 118.357 1.00 51.54 O
ATOM 6 C5' U B 311 56.927 -61.634 117.493 1.00 51.02 C
ATOM 7 C4' U B 311 56.176 -60.335 117.552 1.00 50.54 C
ATOM 8 O4' U B 311 54.786 -60.553 117.230 1.00 50.35 O
ATOM 9 C3' U B 311 56.140 -59.650 118.903 1.00 50.77 C
ATOM 10 O3' U B 311 57.360 -58.965 119.162 1.00 50.79 O
ATOM 11 C2' U B 311 54.930 -58.736 118.742 1.00 50.30 C
ATOM 12 O2' U B 311 55.274 -57.608 117.939 1.00 49.74 O
ATOM 13 C1' U B 311 53.998 -59.614 117.905 1.00 50.18 C
ATOM 14 N1 U B 311 52.980 -60.340 118.697 1.00 50.56 N
ATOM 15 C2 U B 311 51.765 -59.733 119.027 1.00 50.35 C
ATOM 16 O2 U B 311 51.490 -58.578 118.785 1.00 49.90 O
ATOM 17 N3 U B 311 50.884 -60.532 119.708 1.00 50.74 N
ATOM 18 C4 U B 311 51.074 -61.842 120.043 1.00 51.28 C
ATOM 19 O4 U B 311 50.196 -62.405 120.643 1.00 51.58 O
ATOM 20 C5 U B 311 52.293 -62.428 119.629 1.00 51.45 C
ATOM 21 C6 U B 311 53.182 -61.682 118.969 1.00 51.09 C
ATOM 22 P C B 312 57.911 -58.707 120.653 1.00 48.45 P
ATOM 23 OP1 C B 312 59.398 -58.838 120.599 1.00 48.67 O
ATOM 24 OP2 C B 312 57.149 -59.554 121.589 1.00 48.93 O
ATOM 25 O5' C B 312 57.534 -57.191 120.891 1.00 48.03 O
TER
ATOM 2 P C A 66 53.408 -51.303 113.511 1.00 48.30 P
ATOM 3 OP1 C A 66 52.690 -50.560 112.471 1.00 47.73 O
ATOM 4 OP2 C A 66 52.732 -52.413 114.164 1.00 48.71 O
ATOM 5 O5' C A 66 54.808 -51.769 112.968 1.00 48.40 O
ATOM 6 C5' C A 66 55.631 -50.859 112.265 1.00 48.05 C
ATOM 7 C4' C A 66 56.953 -51.465 111.915 1.00 48.25 C
ATOM 8 O4' C A 66 57.584 -52.000 113.108 1.00 48.81 O
ATOM 9 C3' C A 66 56.924 -52.657 110.971 1.00 48.29 C
ATOM 10 O3' C A 66 56.722 -52.290 109.625 1.00 47.79 O
ATOM 11 C2' C A 66 58.287 -53.242 111.217 1.00 48.67 C
ATOM 12 O2' C A 66 59.268 -52.391 110.638 1.00 48.40 O
ATOM 13 C1' C A 66 58.396 -53.095 112.736 1.00 49.09 C
ATOM 14 N1 C A 66 57.951 -54.296 113.461 1.00 49.58 N
ATOM 15 C2 C A 66 58.805 -55.401 113.470 1.00 49.99 C
ATOM 16 O2 C A 66 59.860 -55.318 112.836 1.00 49.92 O
ATOM 17 N3 C A 66 58.450 -56.521 114.163 1.00 50.48 N
ATOM 18 C4 C A 66 57.289 -56.552 114.837 1.00 50.55 C
ATOM 19 N4 C A 66 56.942 -57.648 115.524 1.00 51.04 N
ATOM 20 C5 C A 66 56.430 -55.424 114.843 1.00 50.13 C
ATOM 21 C6 C A 66 56.793 -54.330 114.164 1.00 49.66 C
ATOM 22 P A A 67 56.136 -53.352 108.576 1.00 46.97 P
ATOM 23 OP1 A A 67 55.784 -52.610 107.351 1.00 46.41 O
ATOM 24 OP2 A A 67 55.081 -54.108 109.277 1.00 47.25 O
ATOM 25 O5' A A 67 57.386 -54.269 108.282 1.00 47.28 O
TER
ATOM 1 O3' A B 310 56.434 -64.678 117.051 1.00 53.38 O
ATOM 2 P U B 311 56.936 -64.040 118.426 1.00 52.11 P
ATOM 3 OP1 U B 311 58.409 -63.970 118.345 1.00 52.25 O
ATOM 4 OP2 U B 311 56.301 -64.785 119.549 1.00 52.66 O
ATOM 5 O5' U B 311 56.350 -62.589 118.357 1.00 51.54 O
ATOM 6 C5' U B 311 56.927 -61.634 117.493 1.00 51.02 C
ATOM 7 C4' U B 311 56.176 -60.335 117.552 1.00 50.54 C
ATOM 8 O4' U B 311 54.786 -60.553 117.230 1.00 50.35 O
ATOM 9 C3' U B 311 56.140 -59.650 118.903 1.00 50.77 C
ATOM 10 O3' U B 311 57.360 -58.965 119.162 1.00 50.79 O
ATOM 11 C2' U B 311 54.930 -58.736 118.742 1.00 50.30 C
ATOM 12 O2' U B 311 55.274 -57.608 117.939 1.00 49.74 O
ATOM 13 C1' U B 311 53.998 -59.614 117.905 1.00 50.18 C
ATOM 14 N1 U B 311 52.980 -60.340 118.697 1.00 50.56 N
ATOM 15 C2 U B 311 51.765 -59.733 119.027 1.00 50.35 C
ATOM 16 O2 U B 311 51.490 -58.578 118.785 1.00 49.90 O
ATOM 17 N3 U B 311 50.884 -60.532 119.708 1.00 50.74 N
ATOM 18 C4 U B 311 51.074 -61.842 120.043 1.00 51.28 C
ATOM 19 O4 U B 311 50.196 -62.405 120.643 1.00 51.58 O
ATOM 20 C5 U B 311 52.293 -62.428 119.629 1.00 51.45 C
ATOM 21 C6 U B 311 53.182 -61.682 118.969 1.00 51.09 C
ATOM 22 P C B 312 57.911 -58.707 120.653 1.00 48.45 P
ATOM 23 OP1 C B 312 59.398 -58.838 120.599 1.00 48.67 O
ATOM 24 OP2 C B 312 57.149 -59.554 121.589 1.00 48.93 O
ATOM 25 O5' C B 312 57.534 -57.191 120.891 1.00 48.03 O
TER
Atoms:
C2: (58.805,-55.401,113.470)
OP1: (52.690,-50.560,112.471)
OP2: (52.732,-52.413,114.164)
C4: (57.289,-56.552,114.837)
O5': (54.808,-51.769,112.968)
C3': (56.924,-52.657,110.971)
C1': (58.396,-53.095,112.736)
O4': (57.584,-52.000,113.108)
C5': (55.631,-50.859,112.265)
P: (53.408,-51.303,113.511)
O2: (59.860,-55.318,112.836)
C4': (56.953,-51.465,111.915)
C2': (58.287,-53.242,111.217)
O2': (59.268,-52.391,110.638)
N1: (57.951,-54.296,113.461)
N3: (58.450,-56.521,114.163)
N4: (56.942,-57.648,115.524)
C6: (56.793,-54.330,114.164)
C5: (56.430,-55.424,114.843)
O3': (56.722,-52.290,109.625)
OP1: (52.690,-50.560,112.471)
OP2: (52.732,-52.413,114.164)
C4: (57.289,-56.552,114.837)
O5': (54.808,-51.769,112.968)
C3': (56.924,-52.657,110.971)
C1': (58.396,-53.095,112.736)
O4': (57.584,-52.000,113.108)
C5': (55.631,-50.859,112.265)
P: (53.408,-51.303,113.511)
O2: (59.860,-55.318,112.836)
C4': (56.953,-51.465,111.915)
C2': (58.287,-53.242,111.217)
O2': (59.268,-52.391,110.638)
N1: (57.951,-54.296,113.461)
N3: (58.450,-56.521,114.163)
N4: (56.942,-57.648,115.524)
C6: (56.793,-54.330,114.164)
C5: (56.430,-55.424,114.843)
O3': (56.722,-52.290,109.625)
C4: (51.074,-61.842,120.043)
N3: (50.884,-60.532,119.708)
OP1: (58.409,-63.970,118.345)
OP2: (56.301,-64.785,119.549)
C2: (51.765,-59.733,119.027)
C1': (53.998,-59.614,117.905)
C3': (56.140,-59.650,118.903)
O5': (56.350,-62.589,118.357)
O4': (54.786,-60.553,117.230)
C5': (56.927,-61.634,117.493)
P: (56.936,-64.040,118.426)
C4': (56.176,-60.335,117.552)
C2': (54.930,-58.736,118.742)
O2': (55.274,-57.608,117.939)
N1: (52.980,-60.340,118.697)
O4: (50.196,-62.405,120.643)
O2: (51.490,-58.578,118.785)
C6: (53.182,-61.682,118.969)
C5: (52.293,-62.428,119.629)
O3': (57.360,-58.965,119.162)
N3: (50.884,-60.532,119.708)
OP1: (58.409,-63.970,118.345)
OP2: (56.301,-64.785,119.549)
C2: (51.765,-59.733,119.027)
C1': (53.998,-59.614,117.905)
C3': (56.140,-59.650,118.903)
O5': (56.350,-62.589,118.357)
O4': (54.786,-60.553,117.230)
C5': (56.927,-61.634,117.493)
P: (56.936,-64.040,118.426)
C4': (56.176,-60.335,117.552)
C2': (54.930,-58.736,118.742)
O2': (55.274,-57.608,117.939)
N1: (52.980,-60.340,118.697)
O4: (50.196,-62.405,120.643)
O2: (51.490,-58.578,118.785)
C6: (53.182,-61.682,118.969)
C5: (52.293,-62.428,119.629)
O3': (57.360,-58.965,119.162)
Image (generated by PyMOL):