Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1JBR:C12:F1
Extra
PDB:
ATOM 1 O3' U A 11 20.225 -4.452 -6.597 1.00 68.38 O
ATOM 2 P A A 12 19.507 -5.673 -5.836 1.00 70.30 P
ATOM 3 OP1 A A 12 18.558 -6.296 -6.801 1.00 71.64 O
ATOM 4 OP2 A A 12 19.004 -5.214 -4.513 1.00 71.63 O
ATOM 5 O5' A A 12 20.703 -6.688 -5.574 1.00 66.40 O
ATOM 6 C5' A A 12 21.816 -6.741 -6.453 1.00 59.90 C
ATOM 7 C4' A A 12 23.095 -6.795 -5.666 1.00 60.15 C
ATOM 8 O4' A A 12 23.440 -5.478 -5.169 1.00 58.25 O
ATOM 9 C3' A A 12 23.102 -7.631 -4.395 1.00 60.80 C
ATOM 10 O3' A A 12 23.168 -9.029 -4.667 1.00 63.67 O
ATOM 11 C2' A A 12 24.375 -7.126 -3.727 1.00 59.70 C
ATOM 12 O2' A A 12 25.548 -7.694 -4.287 1.00 55.74 O
ATOM 13 C1' A A 12 24.289 -5.623 -4.031 1.00 58.68 C
ATOM 14 N9 A A 12 23.750 -4.828 -2.918 1.00 56.52 N
ATOM 15 C8 A A 12 22.500 -4.259 -2.787 1.00 55.25 C
ATOM 16 N7 A A 12 22.327 -3.616 -1.655 1.00 55.04 N
ATOM 17 C5 A A 12 23.544 -3.764 -0.996 1.00 53.92 C
ATOM 18 C6 A A 12 24.013 -3.308 0.260 1.00 52.59 C
ATOM 19 N6 A A 12 23.285 -2.581 1.111 1.00 48.72 N
ATOM 20 N1 A A 12 25.274 -3.631 0.611 1.00 52.40 N
ATOM 21 C2 A A 12 26.008 -4.361 -0.238 1.00 53.80 C
ATOM 22 N3 A A 12 25.687 -4.843 -1.436 1.00 53.03 N
ATOM 23 C4 A A 12 24.428 -4.507 -1.761 1.00 54.00 C
ATOM 24 P C A 13 22.188 -10.046 -3.889 1.00 64.92 P
ATOM 25 OP1 C A 13 22.514 -11.404 -4.390 1.00 64.75 O
ATOM 26 OP2 C A 13 20.787 -9.543 -4.001 1.00 64.27 O
ATOM 27 O5' C A 13 22.640 -9.946 -2.357 1.00 64.69 O
TER
ATOM 1 P G B 1 19.863 3.006 6.873 1.00 52.41 P
ATOM 2 OP1 G B 1 20.635 3.626 7.983 1.00 53.46 O
ATOM 3 OP2 G B 1 18.938 3.835 6.058 1.00 53.36 O
ATOM 4 O5' G B 1 20.857 2.285 5.866 1.00 50.55 O
ATOM 5 C5' G B 1 21.822 1.354 6.334 1.00 46.29 C
ATOM 6 C4' G B 1 22.466 0.657 5.171 1.00 44.04 C
ATOM 7 O4' G B 1 21.561 -0.366 4.673 1.00 41.76 O
ATOM 8 C3' G B 1 22.728 1.532 3.959 1.00 44.69 C
ATOM 9 O3' G B 1 23.919 2.299 4.087 1.00 44.96 O
ATOM 10 C2' G B 1 22.794 0.496 2.849 1.00 43.39 C
ATOM 11 O2' G B 1 24.014 -0.220 2.864 1.00 46.06 O
ATOM 12 C1' G B 1 21.636 -0.419 3.255 1.00 44.03 C
ATOM 13 N9 G B 1 20.344 0.005 2.726 1.00 43.28 N
ATOM 14 C8 G B 1 19.435 0.815 3.361 1.00 44.32 C
ATOM 15 N7 G B 1 18.367 1.038 2.650 1.00 44.91 N
ATOM 16 C5 G B 1 18.577 0.333 1.476 1.00 43.68 C
ATOM 17 C6 G B 1 17.751 0.202 0.324 1.00 45.86 C
ATOM 18 O6 G B 1 16.634 0.697 0.114 1.00 49.67 O
ATOM 19 N1 G B 1 18.339 -0.603 -0.639 1.00 43.09 N
ATOM 20 C2 G B 1 19.560 -1.214 -0.517 1.00 42.63 C
ATOM 21 N2 G B 1 19.937 -1.960 -1.570 1.00 44.18 N
ATOM 22 N3 G B 1 20.346 -1.103 0.554 1.00 42.60 N
ATOM 23 C4 G B 1 19.792 -0.316 1.505 1.00 43.20 C
ATOM 24 P A B 2 24.115 3.617 3.185 1.00 46.69 P
ATOM 25 OP1 A B 2 25.178 4.456 3.802 1.00 49.70 O
ATOM 26 OP2 A B 2 22.774 4.203 2.933 1.00 47.82 O
ATOM 27 O5' A B 2 24.665 3.053 1.803 1.00 45.38 O
TER
ATOM 2 P A A 12 19.507 -5.673 -5.836 1.00 70.30 P
ATOM 3 OP1 A A 12 18.558 -6.296 -6.801 1.00 71.64 O
ATOM 4 OP2 A A 12 19.004 -5.214 -4.513 1.00 71.63 O
ATOM 5 O5' A A 12 20.703 -6.688 -5.574 1.00 66.40 O
ATOM 6 C5' A A 12 21.816 -6.741 -6.453 1.00 59.90 C
ATOM 7 C4' A A 12 23.095 -6.795 -5.666 1.00 60.15 C
ATOM 8 O4' A A 12 23.440 -5.478 -5.169 1.00 58.25 O
ATOM 9 C3' A A 12 23.102 -7.631 -4.395 1.00 60.80 C
ATOM 10 O3' A A 12 23.168 -9.029 -4.667 1.00 63.67 O
ATOM 11 C2' A A 12 24.375 -7.126 -3.727 1.00 59.70 C
ATOM 12 O2' A A 12 25.548 -7.694 -4.287 1.00 55.74 O
ATOM 13 C1' A A 12 24.289 -5.623 -4.031 1.00 58.68 C
ATOM 14 N9 A A 12 23.750 -4.828 -2.918 1.00 56.52 N
ATOM 15 C8 A A 12 22.500 -4.259 -2.787 1.00 55.25 C
ATOM 16 N7 A A 12 22.327 -3.616 -1.655 1.00 55.04 N
ATOM 17 C5 A A 12 23.544 -3.764 -0.996 1.00 53.92 C
ATOM 18 C6 A A 12 24.013 -3.308 0.260 1.00 52.59 C
ATOM 19 N6 A A 12 23.285 -2.581 1.111 1.00 48.72 N
ATOM 20 N1 A A 12 25.274 -3.631 0.611 1.00 52.40 N
ATOM 21 C2 A A 12 26.008 -4.361 -0.238 1.00 53.80 C
ATOM 22 N3 A A 12 25.687 -4.843 -1.436 1.00 53.03 N
ATOM 23 C4 A A 12 24.428 -4.507 -1.761 1.00 54.00 C
ATOM 24 P C A 13 22.188 -10.046 -3.889 1.00 64.92 P
ATOM 25 OP1 C A 13 22.514 -11.404 -4.390 1.00 64.75 O
ATOM 26 OP2 C A 13 20.787 -9.543 -4.001 1.00 64.27 O
ATOM 27 O5' C A 13 22.640 -9.946 -2.357 1.00 64.69 O
TER
ATOM 1 P G B 1 19.863 3.006 6.873 1.00 52.41 P
ATOM 2 OP1 G B 1 20.635 3.626 7.983 1.00 53.46 O
ATOM 3 OP2 G B 1 18.938 3.835 6.058 1.00 53.36 O
ATOM 4 O5' G B 1 20.857 2.285 5.866 1.00 50.55 O
ATOM 5 C5' G B 1 21.822 1.354 6.334 1.00 46.29 C
ATOM 6 C4' G B 1 22.466 0.657 5.171 1.00 44.04 C
ATOM 7 O4' G B 1 21.561 -0.366 4.673 1.00 41.76 O
ATOM 8 C3' G B 1 22.728 1.532 3.959 1.00 44.69 C
ATOM 9 O3' G B 1 23.919 2.299 4.087 1.00 44.96 O
ATOM 10 C2' G B 1 22.794 0.496 2.849 1.00 43.39 C
ATOM 11 O2' G B 1 24.014 -0.220 2.864 1.00 46.06 O
ATOM 12 C1' G B 1 21.636 -0.419 3.255 1.00 44.03 C
ATOM 13 N9 G B 1 20.344 0.005 2.726 1.00 43.28 N
ATOM 14 C8 G B 1 19.435 0.815 3.361 1.00 44.32 C
ATOM 15 N7 G B 1 18.367 1.038 2.650 1.00 44.91 N
ATOM 16 C5 G B 1 18.577 0.333 1.476 1.00 43.68 C
ATOM 17 C6 G B 1 17.751 0.202 0.324 1.00 45.86 C
ATOM 18 O6 G B 1 16.634 0.697 0.114 1.00 49.67 O
ATOM 19 N1 G B 1 18.339 -0.603 -0.639 1.00 43.09 N
ATOM 20 C2 G B 1 19.560 -1.214 -0.517 1.00 42.63 C
ATOM 21 N2 G B 1 19.937 -1.960 -1.570 1.00 44.18 N
ATOM 22 N3 G B 1 20.346 -1.103 0.554 1.00 42.60 N
ATOM 23 C4 G B 1 19.792 -0.316 1.505 1.00 43.20 C
ATOM 24 P A B 2 24.115 3.617 3.185 1.00 46.69 P
ATOM 25 OP1 A B 2 25.178 4.456 3.802 1.00 49.70 O
ATOM 26 OP2 A B 2 22.774 4.203 2.933 1.00 47.82 O
ATOM 27 O5' A B 2 24.665 3.053 1.803 1.00 45.38 O
TER
Atoms:
OP1: (18.558,-6.296,-6.801)
OP2: (19.004,-5.214,-4.513)
C3': (23.102,-7.631,-4.395)
C1': (24.289,-5.623,-4.031)
C5': (21.816,-6.741,-6.453)
O4': (23.440,-5.478,-5.169)
C8: (22.500,-4.259,-2.787)
O2': (25.548,-7.694,-4.287)
C6: (24.013,-3.308,0.260)
C5: (23.544,-3.764,-0.996)
C4: (24.428,-4.507,-1.761)
P: (19.507,-5.673,-5.836)
C4': (23.095,-6.795,-5.666)
C2': (24.375,-7.126,-3.727)
C2: (26.008,-4.361,-0.238)
N1: (25.274,-3.631,0.611)
N3: (25.687,-4.843,-1.436)
N6: (23.285,-2.581,1.111)
N7: (22.327,-3.616,-1.655)
N9: (23.750,-4.828,-2.918)
O5': (20.703,-6.688,-5.574)
O3': (23.168,-9.029,-4.667)
OP2: (19.004,-5.214,-4.513)
C3': (23.102,-7.631,-4.395)
C1': (24.289,-5.623,-4.031)
C5': (21.816,-6.741,-6.453)
O4': (23.440,-5.478,-5.169)
C8: (22.500,-4.259,-2.787)
O2': (25.548,-7.694,-4.287)
C6: (24.013,-3.308,0.260)
C5: (23.544,-3.764,-0.996)
C4: (24.428,-4.507,-1.761)
P: (19.507,-5.673,-5.836)
C4': (23.095,-6.795,-5.666)
C2': (24.375,-7.126,-3.727)
C2: (26.008,-4.361,-0.238)
N1: (25.274,-3.631,0.611)
N3: (25.687,-4.843,-1.436)
N6: (23.285,-2.581,1.111)
N7: (22.327,-3.616,-1.655)
N9: (23.750,-4.828,-2.918)
O5': (20.703,-6.688,-5.574)
O3': (23.168,-9.029,-4.667)
OP1: (20.635,3.626,7.983)
OP2: (18.938,3.835,6.058)
C3': (22.728,1.532,3.959)
C1': (21.636,-0.419,3.255)
C5': (21.822,1.354,6.334)
O6: (16.634,0.697,0.114)
O4': (21.561,-0.366,4.673)
C8: (19.435,0.815,3.361)
C2: (19.560,-1.214,-0.517)
C6: (17.751,0.202,0.324)
C5: (18.577,0.333,1.476)
C4: (19.792,-0.316,1.505)
P: (19.863,3.006,6.873)
C4': (22.466,0.657,5.171)
C2': (22.794,0.496,2.849)
O2': (24.014,-0.220,2.864)
N1: (18.339,-0.603,-0.639)
N2: (19.937,-1.960,-1.570)
N3: (20.346,-1.103,0.554)
N7: (18.367,1.038,2.650)
N9: (20.344,0.005,2.726)
O5': (20.857,2.285,5.866)
O3': (23.919,2.299,4.087)
OP2: (18.938,3.835,6.058)
C3': (22.728,1.532,3.959)
C1': (21.636,-0.419,3.255)
C5': (21.822,1.354,6.334)
O6: (16.634,0.697,0.114)
O4': (21.561,-0.366,4.673)
C8: (19.435,0.815,3.361)
C2: (19.560,-1.214,-0.517)
C6: (17.751,0.202,0.324)
C5: (18.577,0.333,1.476)
C4: (19.792,-0.316,1.505)
P: (19.863,3.006,6.873)
C4': (22.466,0.657,5.171)
C2': (22.794,0.496,2.849)
O2': (24.014,-0.220,2.864)
N1: (18.339,-0.603,-0.639)
N2: (19.937,-1.960,-1.570)
N3: (20.346,-1.103,0.554)
N7: (18.367,1.038,2.650)
N9: (20.344,0.005,2.726)
O5': (20.857,2.285,5.866)
O3': (23.919,2.299,4.087)
Image (generated by PyMOL):