Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:9104:975
Extra
PDB:
ATOM 1 O3' A A 103 52.085 57.082 116.986 1.00 54.62 O
ATOM 2 P A A 104 52.123 55.843 117.998 1.00 54.77 P
ATOM 3 OP1 A A 104 52.902 54.758 117.341 1.00 54.16 O
ATOM 4 OP2 A A 104 50.734 55.588 118.457 1.00 53.29 O
ATOM 5 O5' A A 104 52.939 56.403 119.245 1.00 53.23 O
ATOM 6 C5' A A 104 54.284 56.853 119.073 1.00 55.45 C
ATOM 7 C4' A A 104 54.829 57.387 120.366 1.00 57.53 C
ATOM 8 O4' A A 104 54.009 58.493 120.815 1.00 58.40 O
ATOM 9 C3' A A 104 54.810 56.440 121.546 1.00 59.20 C
ATOM 10 O3' A A 104 55.891 55.526 121.505 1.00 61.88 O
ATOM 11 C2' A A 104 54.921 57.404 122.716 1.00 59.32 C
ATOM 12 O2' A A 104 56.247 57.866 122.909 1.00 59.42 O
ATOM 13 C1' A A 104 54.033 58.554 122.233 1.00 58.90 C
ATOM 14 N9 A A 104 52.658 58.460 122.719 1.00 59.06 N
ATOM 15 C8 A A 104 51.592 57.825 122.126 1.00 60.50 C
ATOM 16 N7 A A 104 50.475 57.917 122.809 1.00 59.81 N
ATOM 17 C5 A A 104 50.829 58.659 123.927 1.00 58.94 C
ATOM 18 C6 A A 104 50.095 59.098 125.040 1.00 58.18 C
ATOM 19 N6 A A 104 48.802 58.837 125.223 1.00 58.42 N
ATOM 20 N1 A A 104 50.742 59.821 125.973 1.00 57.74 N
ATOM 21 C2 A A 104 52.042 60.077 125.794 1.00 59.27 C
ATOM 22 N3 A A 104 52.845 59.716 124.794 1.00 59.57 N
ATOM 23 C4 A A 104 52.169 59.001 123.883 1.00 58.97 C
ATOM 24 P U A 105 55.678 54.024 122.035 1.00 65.89 P
ATOM 25 OP1 U A 105 57.039 53.416 122.119 1.00 65.20 O
ATOM 26 OP2 U A 105 54.617 53.349 121.236 1.00 63.86 O
ATOM 27 O5' U A 105 55.111 54.219 123.509 1.00 65.79 O
TER
ATOM 1 O3' G B 74 40.831 57.044 129.501 1.00 68.92 O
ATOM 2 P G B 75 40.817 58.472 128.766 1.00 69.77 P
ATOM 3 OP1 G B 75 40.454 59.516 129.758 1.00 70.96 O
ATOM 4 OP2 G B 75 40.019 58.337 127.517 1.00 69.97 O
ATOM 5 O5' G B 75 42.340 58.708 128.371 1.00 69.10 O
ATOM 6 C5' G B 75 43.329 58.979 129.379 1.00 68.44 C
ATOM 7 C4' G B 75 44.680 59.185 128.739 1.00 67.94 C
ATOM 8 O4' G B 75 45.037 57.991 127.994 1.00 66.71 O
ATOM 9 C3' G B 75 44.758 60.306 127.716 1.00 67.64 C
ATOM 10 O3' G B 75 44.955 61.571 128.350 1.00 69.59 O
ATOM 11 C2' G B 75 45.935 59.864 126.858 1.00 67.42 C
ATOM 12 O2' G B 75 47.189 60.125 127.458 1.00 66.89 O
ATOM 13 C1' G B 75 45.703 58.352 126.800 1.00 65.49 C
ATOM 14 N9 G B 75 44.853 57.957 125.681 1.00 64.22 N
ATOM 15 C8 G B 75 43.484 57.836 125.683 1.00 63.90 C
ATOM 16 N7 G B 75 43.001 57.459 124.532 1.00 64.28 N
ATOM 17 C5 G B 75 44.120 57.321 123.720 1.00 63.57 C
ATOM 18 C6 G B 75 44.228 56.919 122.366 1.00 63.48 C
ATOM 19 O6 G B 75 43.325 56.578 121.586 1.00 64.85 O
ATOM 20 N1 G B 75 45.550 56.929 121.935 1.00 62.05 N
ATOM 21 C2 G B 75 46.629 57.273 122.706 1.00 61.22 C
ATOM 22 N2 G B 75 47.825 57.237 122.101 1.00 60.22 N
ATOM 23 N3 G B 75 46.544 57.629 123.972 1.00 61.75 N
ATOM 24 C4 G B 75 45.269 57.633 124.412 1.00 63.05 C
ATOM 25 P A B 76 44.967 62.927 127.473 1.00 70.87 P
ATOM 26 OP1 A B 76 45.515 62.619 126.121 1.00 70.85 O
ATOM 27 OP2 A B 76 45.604 63.990 128.304 1.00 71.33 O
ATOM 28 O5' A B 76 43.440 63.336 127.314 1.00 66.47 O
TER
ATOM 2 P A A 104 52.123 55.843 117.998 1.00 54.77 P
ATOM 3 OP1 A A 104 52.902 54.758 117.341 1.00 54.16 O
ATOM 4 OP2 A A 104 50.734 55.588 118.457 1.00 53.29 O
ATOM 5 O5' A A 104 52.939 56.403 119.245 1.00 53.23 O
ATOM 6 C5' A A 104 54.284 56.853 119.073 1.00 55.45 C
ATOM 7 C4' A A 104 54.829 57.387 120.366 1.00 57.53 C
ATOM 8 O4' A A 104 54.009 58.493 120.815 1.00 58.40 O
ATOM 9 C3' A A 104 54.810 56.440 121.546 1.00 59.20 C
ATOM 10 O3' A A 104 55.891 55.526 121.505 1.00 61.88 O
ATOM 11 C2' A A 104 54.921 57.404 122.716 1.00 59.32 C
ATOM 12 O2' A A 104 56.247 57.866 122.909 1.00 59.42 O
ATOM 13 C1' A A 104 54.033 58.554 122.233 1.00 58.90 C
ATOM 14 N9 A A 104 52.658 58.460 122.719 1.00 59.06 N
ATOM 15 C8 A A 104 51.592 57.825 122.126 1.00 60.50 C
ATOM 16 N7 A A 104 50.475 57.917 122.809 1.00 59.81 N
ATOM 17 C5 A A 104 50.829 58.659 123.927 1.00 58.94 C
ATOM 18 C6 A A 104 50.095 59.098 125.040 1.00 58.18 C
ATOM 19 N6 A A 104 48.802 58.837 125.223 1.00 58.42 N
ATOM 20 N1 A A 104 50.742 59.821 125.973 1.00 57.74 N
ATOM 21 C2 A A 104 52.042 60.077 125.794 1.00 59.27 C
ATOM 22 N3 A A 104 52.845 59.716 124.794 1.00 59.57 N
ATOM 23 C4 A A 104 52.169 59.001 123.883 1.00 58.97 C
ATOM 24 P U A 105 55.678 54.024 122.035 1.00 65.89 P
ATOM 25 OP1 U A 105 57.039 53.416 122.119 1.00 65.20 O
ATOM 26 OP2 U A 105 54.617 53.349 121.236 1.00 63.86 O
ATOM 27 O5' U A 105 55.111 54.219 123.509 1.00 65.79 O
TER
ATOM 1 O3' G B 74 40.831 57.044 129.501 1.00 68.92 O
ATOM 2 P G B 75 40.817 58.472 128.766 1.00 69.77 P
ATOM 3 OP1 G B 75 40.454 59.516 129.758 1.00 70.96 O
ATOM 4 OP2 G B 75 40.019 58.337 127.517 1.00 69.97 O
ATOM 5 O5' G B 75 42.340 58.708 128.371 1.00 69.10 O
ATOM 6 C5' G B 75 43.329 58.979 129.379 1.00 68.44 C
ATOM 7 C4' G B 75 44.680 59.185 128.739 1.00 67.94 C
ATOM 8 O4' G B 75 45.037 57.991 127.994 1.00 66.71 O
ATOM 9 C3' G B 75 44.758 60.306 127.716 1.00 67.64 C
ATOM 10 O3' G B 75 44.955 61.571 128.350 1.00 69.59 O
ATOM 11 C2' G B 75 45.935 59.864 126.858 1.00 67.42 C
ATOM 12 O2' G B 75 47.189 60.125 127.458 1.00 66.89 O
ATOM 13 C1' G B 75 45.703 58.352 126.800 1.00 65.49 C
ATOM 14 N9 G B 75 44.853 57.957 125.681 1.00 64.22 N
ATOM 15 C8 G B 75 43.484 57.836 125.683 1.00 63.90 C
ATOM 16 N7 G B 75 43.001 57.459 124.532 1.00 64.28 N
ATOM 17 C5 G B 75 44.120 57.321 123.720 1.00 63.57 C
ATOM 18 C6 G B 75 44.228 56.919 122.366 1.00 63.48 C
ATOM 19 O6 G B 75 43.325 56.578 121.586 1.00 64.85 O
ATOM 20 N1 G B 75 45.550 56.929 121.935 1.00 62.05 N
ATOM 21 C2 G B 75 46.629 57.273 122.706 1.00 61.22 C
ATOM 22 N2 G B 75 47.825 57.237 122.101 1.00 60.22 N
ATOM 23 N3 G B 75 46.544 57.629 123.972 1.00 61.75 N
ATOM 24 C4 G B 75 45.269 57.633 124.412 1.00 63.05 C
ATOM 25 P A B 76 44.967 62.927 127.473 1.00 70.87 P
ATOM 26 OP1 A B 76 45.515 62.619 126.121 1.00 70.85 O
ATOM 27 OP2 A B 76 45.604 63.990 128.304 1.00 71.33 O
ATOM 28 O5' A B 76 43.440 63.336 127.314 1.00 66.47 O
TER
Atoms:
OP1: (52.902,54.758,117.341)
OP2: (50.734,55.588,118.457)
C3': (54.810,56.440,121.546)
C1': (54.033,58.554,122.233)
C5': (54.284,56.853,119.073)
O4': (54.009,58.493,120.815)
C8: (51.592,57.825,122.126)
O2': (56.247,57.866,122.909)
C6: (50.095,59.098,125.040)
C5: (50.829,58.659,123.927)
C4: (52.169,59.001,123.883)
P: (52.123,55.843,117.998)
C4': (54.829,57.387,120.366)
C2': (54.921,57.404,122.716)
C2: (52.042,60.077,125.794)
N1: (50.742,59.821,125.973)
N3: (52.845,59.716,124.794)
N6: (48.802,58.837,125.223)
N7: (50.475,57.917,122.809)
N9: (52.658,58.460,122.719)
O5': (52.939,56.403,119.245)
O3': (55.891,55.526,121.505)
OP2: (50.734,55.588,118.457)
C3': (54.810,56.440,121.546)
C1': (54.033,58.554,122.233)
C5': (54.284,56.853,119.073)
O4': (54.009,58.493,120.815)
C8: (51.592,57.825,122.126)
O2': (56.247,57.866,122.909)
C6: (50.095,59.098,125.040)
C5: (50.829,58.659,123.927)
C4: (52.169,59.001,123.883)
P: (52.123,55.843,117.998)
C4': (54.829,57.387,120.366)
C2': (54.921,57.404,122.716)
C2: (52.042,60.077,125.794)
N1: (50.742,59.821,125.973)
N3: (52.845,59.716,124.794)
N6: (48.802,58.837,125.223)
N7: (50.475,57.917,122.809)
N9: (52.658,58.460,122.719)
O5': (52.939,56.403,119.245)
O3': (55.891,55.526,121.505)
OP1: (40.454,59.516,129.758)
OP2: (40.019,58.337,127.517)
C3': (44.758,60.306,127.716)
C1': (45.703,58.352,126.800)
C5': (43.329,58.979,129.379)
O6: (43.325,56.578,121.586)
O4': (45.037,57.991,127.994)
C8: (43.484,57.836,125.683)
C2: (46.629,57.273,122.706)
C6: (44.228,56.919,122.366)
C5: (44.120,57.321,123.720)
C4: (45.269,57.633,124.412)
P: (40.817,58.472,128.766)
C4': (44.680,59.185,128.739)
C2': (45.935,59.864,126.858)
O2': (47.189,60.125,127.458)
N1: (45.550,56.929,121.935)
N2: (47.825,57.237,122.101)
N3: (46.544,57.629,123.972)
N7: (43.001,57.459,124.532)
N9: (44.853,57.957,125.681)
O5': (42.340,58.708,128.371)
O3': (44.955,61.571,128.350)
OP2: (40.019,58.337,127.517)
C3': (44.758,60.306,127.716)
C1': (45.703,58.352,126.800)
C5': (43.329,58.979,129.379)
O6: (43.325,56.578,121.586)
O4': (45.037,57.991,127.994)
C8: (43.484,57.836,125.683)
C2: (46.629,57.273,122.706)
C6: (44.228,56.919,122.366)
C5: (44.120,57.321,123.720)
C4: (45.269,57.633,124.412)
P: (40.817,58.472,128.766)
C4': (44.680,59.185,128.739)
C2': (45.935,59.864,126.858)
O2': (47.189,60.125,127.458)
N1: (45.550,56.929,121.935)
N2: (47.825,57.237,122.101)
N3: (46.544,57.629,123.972)
N7: (43.001,57.459,124.532)
N9: (44.853,57.957,125.681)
O5': (42.340,58.708,128.371)
O3': (44.955,61.571,128.350)
Image (generated by PyMOL):