ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1Y39:D47:D42

Extra

PDB:
ATOM 1 O3' U A 46 131.729 62.278 1.512 1.00 55.37 O
ATOM 2 P A A 47 131.151 63.430 0.558 1.00 55.76 P
ATOM 3 OP1 A A 47 131.487 64.744 1.152 1.00 55.78 O
ATOM 4 OP2 A A 47 129.737 63.117 0.226 1.00 57.04 O
ATOM 5 O5' A A 47 131.990 63.269 -0.778 1.00 58.03 O
ATOM 6 C5' A A 47 133.406 63.296 -0.754 1.00 59.64 C
ATOM 7 C4' A A 47 133.947 62.812 -2.073 1.00 61.23 C
ATOM 8 O4' A A 47 133.457 61.465 -2.312 1.00 60.70 O
ATOM 9 C3' A A 47 133.494 63.579 -3.305 1.00 61.75 C
ATOM 10 O3' A A 47 134.298 64.732 -3.494 1.00 63.91 O
ATOM 11 C2' A A 47 133.728 62.550 -4.401 1.00 61.93 C
ATOM 12 O2' A A 47 135.091 62.381 -4.728 1.00 65.06 O
ATOM 13 C1' A A 47 133.270 61.272 -3.705 1.00 60.47 C
ATOM 14 N9 A A 47 131.855 61.056 -3.960 1.00 59.17 N
ATOM 15 C8 A A 47 130.787 61.260 -3.127 1.00 58.98 C
ATOM 16 N7 A A 47 129.630 61.013 -3.687 1.00 58.12 N
ATOM 17 C5 A A 47 129.963 60.611 -4.970 1.00 57.56 C
ATOM 18 C6 A A 47 129.187 60.222 -6.066 1.00 57.66 C
ATOM 19 N6 A A 47 127.850 60.170 -6.051 1.00 58.40 N
ATOM 20 N1 A A 47 129.835 59.884 -7.198 1.00 56.66 N
ATOM 21 C2 A A 47 131.170 59.939 -7.213 1.00 56.51 C
ATOM 22 N3 A A 47 132.007 60.291 -6.251 1.00 56.72 N
ATOM 23 C4 A A 47 131.331 60.621 -5.145 1.00 57.92 C
ATOM 24 P G A 48 133.620 66.117 -3.954 1.00 66.45 P
ATOM 25 OP1 G A 48 134.702 67.085 -4.255 1.00 65.87 O
ATOM 26 OP2 G A 48 132.575 66.473 -2.959 1.00 68.36 O
ATOM 27 O5' G A 48 132.887 65.755 -5.316 1.00 66.31 O
TER

ATOM 1 O3' C B 41 119.008 59.395 -8.809 1.00 72.63 O
ATOM 2 P G B 42 119.429 58.050 -8.027 1.00 72.04 P
ATOM 3 OP1 G B 42 119.186 56.866 -8.904 1.00 70.78 O
ATOM 4 OP2 G B 42 118.778 58.119 -6.684 1.00 70.69 O
ATOM 5 O5' G B 42 121.010 58.197 -7.836 1.00 68.73 O
ATOM 6 C5' G B 42 121.874 58.374 -8.958 1.00 64.35 C
ATOM 7 C4' G B 42 123.298 58.602 -8.501 1.00 62.22 C
ATOM 8 O4' G B 42 123.402 59.870 -7.799 1.00 62.28 O
ATOM 9 C3' G B 42 123.835 57.584 -7.513 1.00 60.96 C
ATOM 10 O3' G B 42 124.338 56.446 -8.194 1.00 60.57 O
ATOM 11 C2' G B 42 124.953 58.353 -6.825 1.00 60.51 C
ATOM 12 O2' G B 42 126.143 58.369 -7.576 1.00 60.47 O
ATOM 13 C1' G B 42 124.361 59.763 -6.755 1.00 60.61 C
ATOM 14 N9 G B 42 123.698 60.030 -5.478 1.00 59.08 N
ATOM 15 C8 G B 42 122.353 59.982 -5.223 1.00 57.62 C
ATOM 16 N7 G B 42 122.060 60.246 -3.980 1.00 57.59 N
ATOM 17 C5 G B 42 123.284 60.487 -3.378 1.00 57.54 C
ATOM 18 C6 G B 42 123.597 60.820 -2.029 1.00 58.65 C
ATOM 19 O6 G B 42 122.824 60.960 -1.061 1.00 60.90 O
ATOM 20 N1 G B 42 124.965 60.984 -1.851 1.00 57.08 N
ATOM 21 C2 G B 42 125.907 60.836 -2.834 1.00 56.44 C
ATOM 22 N2 G B 42 127.172 61.024 -2.456 1.00 56.48 N
ATOM 23 N3 G B 42 125.631 60.524 -4.089 1.00 56.71 N
ATOM 24 C4 G B 42 124.307 60.366 -4.288 1.00 57.79 C
ATOM 25 P U B 43 124.227 54.993 -7.513 1.00 60.67 P
ATOM 26 OP1 U B 43 124.598 54.006 -8.562 1.00 60.54 O
ATOM 27 OP2 U B 43 122.913 54.887 -6.841 1.00 59.92 O
ATOM 28 O5' U B 43 125.361 55.006 -6.394 1.00 59.17 O
TER

Atoms:
OP1: (131.487,64.744,1.152)
OP2: (129.737,63.117,0.226)
C3': (133.494,63.579,-3.305)
C1': (133.270,61.272,-3.705)
C5': (133.406,63.296,-0.754)
O4': (133.457,61.465,-2.312)
C8: (130.787,61.260,-3.127)
O2': (135.091,62.381,-4.728)
C6: (129.187,60.222,-6.066)
C5: (129.963,60.611,-4.970)
C4: (131.331,60.621,-5.145)
P: (131.151,63.430,0.558)
C4': (133.947,62.812,-2.073)
C2': (133.728,62.550,-4.401)
C2: (131.170,59.939,-7.213)
N1: (129.835,59.884,-7.198)
N3: (132.007,60.291,-6.251)
N6: (127.850,60.170,-6.051)
N7: (129.630,61.013,-3.687)
N9: (131.855,61.056,-3.960)
O5': (131.990,63.269,-0.778)
O3': (134.298,64.732,-3.494)
OP1: (119.186,56.866,-8.904)
OP2: (118.778,58.119,-6.684)
C3': (123.835,57.584,-7.513)
C1': (124.361,59.763,-6.755)
C5': (121.874,58.374,-8.958)
O6: (122.824,60.960,-1.061)
O4': (123.402,59.870,-7.799)
C8: (122.353,59.982,-5.223)
C2: (125.907,60.836,-2.834)
C6: (123.597,60.820,-2.029)
C5: (123.284,60.487,-3.378)
C4: (124.307,60.366,-4.288)
P: (119.429,58.050,-8.027)
C4': (123.298,58.602,-8.501)
C2': (124.953,58.353,-6.825)
O2': (126.143,58.369,-7.576)
N1: (124.965,60.984,-1.851)
N2: (127.172,61.024,-2.456)
N3: (125.631,60.524,-4.089)
N7: (122.060,60.246,-3.980)
N9: (123.698,60.030,-5.478)
O5': (121.010,58.197,-7.836)
O3': (124.338,56.446,-8.194)
Image (generated by PyMOL):
PyMOL image
show in jmol