Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A346:A347
Extra
PDB:
ATOM 1 O3' A A 345 57.049 125.089 12.813 1.00 76.99 O
ATOM 2 P G A 346 58.348 125.528 13.619 1.00 78.67 P
ATOM 3 OP1 G A 346 58.656 124.450 14.604 1.00 79.16 O
ATOM 4 OP2 G A 346 58.057 126.901 14.102 1.00 79.24 O
ATOM 5 O5' G A 346 59.488 125.552 12.502 1.00 80.63 O
ATOM 6 C5' G A 346 59.315 126.321 11.291 1.00 82.29 C
ATOM 7 C4' G A 346 58.844 125.433 10.158 1.00 83.64 C
ATOM 8 O4' G A 346 58.083 126.231 9.199 1.00 83.80 O
ATOM 9 C3' G A 346 59.904 124.684 9.342 1.00 84.13 C
ATOM 10 O3' G A 346 59.300 123.430 8.951 1.00 85.60 O
ATOM 11 C2' G A 346 60.095 125.639 8.160 1.00 83.57 C
ATOM 12 O2' G A 346 60.680 125.075 7.008 1.00 84.10 O
ATOM 13 C1' G A 346 58.645 126.067 7.907 1.00 83.61 C
ATOM 14 N9 G A 346 58.407 127.287 7.133 1.00 83.25 N
ATOM 15 C8 G A 346 59.293 128.308 6.872 1.00 83.36 C
ATOM 16 N7 G A 346 58.756 129.294 6.205 1.00 83.72 N
ATOM 17 C5 G A 346 57.443 128.896 5.997 1.00 83.85 C
ATOM 18 C6 G A 346 56.371 129.572 5.344 1.00 84.76 C
ATOM 19 O6 G A 346 56.372 130.696 4.820 1.00 85.28 O
ATOM 20 N1 G A 346 55.209 128.809 5.351 1.00 85.10 N
ATOM 21 C2 G A 346 55.091 127.560 5.920 1.00 84.68 C
ATOM 22 N2 G A 346 53.883 126.971 5.810 1.00 84.28 N
ATOM 23 N3 G A 346 56.081 126.929 6.547 1.00 83.82 N
ATOM 24 C4 G A 346 57.216 127.651 6.547 1.00 83.23 C
ATOM 25 P U A 347 60.110 122.335 8.069 1.00 86.23 P
ATOM 26 OP1 U A 347 61.488 122.116 8.607 1.00 85.08 O
ATOM 27 OP2 U A 347 59.929 122.693 6.635 1.00 86.32 O
ATOM 28 O5' U A 347 59.269 120.996 8.287 1.00 85.02 O
TER
ATOM 1 O3' G B 346 59.300 123.430 8.951 1.00 85.60 O
ATOM 2 P U B 347 60.110 122.335 8.069 1.00 86.23 P
ATOM 3 OP1 U B 347 61.488 122.116 8.607 1.00 85.08 O
ATOM 4 OP2 U B 347 59.929 122.693 6.635 1.00 86.32 O
ATOM 5 O5' U B 347 59.269 120.996 8.287 1.00 85.02 O
ATOM 6 C5' U B 347 59.364 120.236 9.512 1.00 83.79 C
ATOM 7 C4' U B 347 58.026 119.594 9.854 1.00 82.39 C
ATOM 8 O4' U B 347 57.073 120.613 10.239 1.00 81.57 O
ATOM 9 C3' U B 347 57.320 118.801 8.762 1.00 81.78 C
ATOM 10 O3' U B 347 57.858 117.479 8.680 1.00 82.83 O
ATOM 11 C2' U B 347 55.855 118.838 9.213 1.00 80.67 C
ATOM 12 O2' U B 347 55.481 117.919 10.222 1.00 80.58 O
ATOM 13 C1' U B 347 55.768 120.215 9.867 1.00 80.17 C
ATOM 14 N1 U B 347 55.171 121.270 9.039 1.00 79.46 N
ATOM 15 C2 U B 347 53.839 121.135 8.677 1.00 79.08 C
ATOM 16 O2 U B 347 53.159 120.175 8.993 1.00 79.45 O
ATOM 17 N3 U B 347 53.338 122.175 7.932 1.00 78.36 N
ATOM 18 C4 U B 347 54.019 123.307 7.522 1.00 77.73 C
ATOM 19 O4 U B 347 53.426 124.163 6.872 1.00 76.83 O
ATOM 20 C5 U B 347 55.391 123.364 7.924 1.00 77.97 C
ATOM 21 C6 U B 347 55.908 122.370 8.644 1.00 79.16 C
ATOM 22 P A B 348 57.879 116.697 7.270 1.00 83.63 P
ATOM 23 OP1 A B 348 58.447 115.351 7.571 1.00 83.22 O
ATOM 24 OP2 A B 348 58.495 117.527 6.200 1.00 82.86 O
ATOM 25 O5' A B 348 56.335 116.506 6.923 1.00 84.41 O
TER
ATOM 2 P G A 346 58.348 125.528 13.619 1.00 78.67 P
ATOM 3 OP1 G A 346 58.656 124.450 14.604 1.00 79.16 O
ATOM 4 OP2 G A 346 58.057 126.901 14.102 1.00 79.24 O
ATOM 5 O5' G A 346 59.488 125.552 12.502 1.00 80.63 O
ATOM 6 C5' G A 346 59.315 126.321 11.291 1.00 82.29 C
ATOM 7 C4' G A 346 58.844 125.433 10.158 1.00 83.64 C
ATOM 8 O4' G A 346 58.083 126.231 9.199 1.00 83.80 O
ATOM 9 C3' G A 346 59.904 124.684 9.342 1.00 84.13 C
ATOM 10 O3' G A 346 59.300 123.430 8.951 1.00 85.60 O
ATOM 11 C2' G A 346 60.095 125.639 8.160 1.00 83.57 C
ATOM 12 O2' G A 346 60.680 125.075 7.008 1.00 84.10 O
ATOM 13 C1' G A 346 58.645 126.067 7.907 1.00 83.61 C
ATOM 14 N9 G A 346 58.407 127.287 7.133 1.00 83.25 N
ATOM 15 C8 G A 346 59.293 128.308 6.872 1.00 83.36 C
ATOM 16 N7 G A 346 58.756 129.294 6.205 1.00 83.72 N
ATOM 17 C5 G A 346 57.443 128.896 5.997 1.00 83.85 C
ATOM 18 C6 G A 346 56.371 129.572 5.344 1.00 84.76 C
ATOM 19 O6 G A 346 56.372 130.696 4.820 1.00 85.28 O
ATOM 20 N1 G A 346 55.209 128.809 5.351 1.00 85.10 N
ATOM 21 C2 G A 346 55.091 127.560 5.920 1.00 84.68 C
ATOM 22 N2 G A 346 53.883 126.971 5.810 1.00 84.28 N
ATOM 23 N3 G A 346 56.081 126.929 6.547 1.00 83.82 N
ATOM 24 C4 G A 346 57.216 127.651 6.547 1.00 83.23 C
ATOM 25 P U A 347 60.110 122.335 8.069 1.00 86.23 P
ATOM 26 OP1 U A 347 61.488 122.116 8.607 1.00 85.08 O
ATOM 27 OP2 U A 347 59.929 122.693 6.635 1.00 86.32 O
ATOM 28 O5' U A 347 59.269 120.996 8.287 1.00 85.02 O
TER
ATOM 1 O3' G B 346 59.300 123.430 8.951 1.00 85.60 O
ATOM 2 P U B 347 60.110 122.335 8.069 1.00 86.23 P
ATOM 3 OP1 U B 347 61.488 122.116 8.607 1.00 85.08 O
ATOM 4 OP2 U B 347 59.929 122.693 6.635 1.00 86.32 O
ATOM 5 O5' U B 347 59.269 120.996 8.287 1.00 85.02 O
ATOM 6 C5' U B 347 59.364 120.236 9.512 1.00 83.79 C
ATOM 7 C4' U B 347 58.026 119.594 9.854 1.00 82.39 C
ATOM 8 O4' U B 347 57.073 120.613 10.239 1.00 81.57 O
ATOM 9 C3' U B 347 57.320 118.801 8.762 1.00 81.78 C
ATOM 10 O3' U B 347 57.858 117.479 8.680 1.00 82.83 O
ATOM 11 C2' U B 347 55.855 118.838 9.213 1.00 80.67 C
ATOM 12 O2' U B 347 55.481 117.919 10.222 1.00 80.58 O
ATOM 13 C1' U B 347 55.768 120.215 9.867 1.00 80.17 C
ATOM 14 N1 U B 347 55.171 121.270 9.039 1.00 79.46 N
ATOM 15 C2 U B 347 53.839 121.135 8.677 1.00 79.08 C
ATOM 16 O2 U B 347 53.159 120.175 8.993 1.00 79.45 O
ATOM 17 N3 U B 347 53.338 122.175 7.932 1.00 78.36 N
ATOM 18 C4 U B 347 54.019 123.307 7.522 1.00 77.73 C
ATOM 19 O4 U B 347 53.426 124.163 6.872 1.00 76.83 O
ATOM 20 C5 U B 347 55.391 123.364 7.924 1.00 77.97 C
ATOM 21 C6 U B 347 55.908 122.370 8.644 1.00 79.16 C
ATOM 22 P A B 348 57.879 116.697 7.270 1.00 83.63 P
ATOM 23 OP1 A B 348 58.447 115.351 7.571 1.00 83.22 O
ATOM 24 OP2 A B 348 58.495 117.527 6.200 1.00 82.86 O
ATOM 25 O5' A B 348 56.335 116.506 6.923 1.00 84.41 O
TER
Atoms:
OP1: (58.656,124.450,14.604)
OP2: (58.057,126.901,14.102)
C3': (59.904,124.684,9.342)
C1': (58.645,126.067,7.907)
C5': (59.315,126.321,11.291)
O6: (56.372,130.696,4.820)
O4': (58.083,126.231,9.199)
C8: (59.293,128.308,6.872)
C2: (55.091,127.560,5.920)
C6: (56.371,129.572,5.344)
C5: (57.443,128.896,5.997)
C4: (57.216,127.651,6.547)
P: (58.348,125.528,13.619)
C4': (58.844,125.433,10.158)
C2': (60.095,125.639,8.160)
O2': (60.680,125.075,7.008)
N1: (55.209,128.809,5.351)
N2: (53.883,126.971,5.810)
N3: (56.081,126.929,6.547)
N7: (58.756,129.294,6.205)
N9: (58.407,127.287,7.133)
O5': (59.488,125.552,12.502)
O3': (59.300,123.430,8.951)
OP2: (58.057,126.901,14.102)
C3': (59.904,124.684,9.342)
C1': (58.645,126.067,7.907)
C5': (59.315,126.321,11.291)
O6: (56.372,130.696,4.820)
O4': (58.083,126.231,9.199)
C8: (59.293,128.308,6.872)
C2: (55.091,127.560,5.920)
C6: (56.371,129.572,5.344)
C5: (57.443,128.896,5.997)
C4: (57.216,127.651,6.547)
P: (58.348,125.528,13.619)
C4': (58.844,125.433,10.158)
C2': (60.095,125.639,8.160)
O2': (60.680,125.075,7.008)
N1: (55.209,128.809,5.351)
N2: (53.883,126.971,5.810)
N3: (56.081,126.929,6.547)
N7: (58.756,129.294,6.205)
N9: (58.407,127.287,7.133)
O5': (59.488,125.552,12.502)
O3': (59.300,123.430,8.951)
C4: (54.019,123.307,7.522)
N3: (53.338,122.175,7.932)
OP1: (61.488,122.116,8.607)
OP2: (59.929,122.693,6.635)
C2: (53.839,121.135,8.677)
C1': (55.768,120.215,9.867)
C3': (57.320,118.801,8.762)
O5': (59.269,120.996,8.287)
O4': (57.073,120.613,10.239)
C5': (59.364,120.236,9.512)
P: (60.110,122.335,8.069)
C4': (58.026,119.594,9.854)
C2': (55.855,118.838,9.213)
O2': (55.481,117.919,10.222)
N1: (55.171,121.270,9.039)
O4: (53.426,124.163,6.872)
O2: (53.159,120.175,8.993)
C6: (55.908,122.370,8.644)
C5: (55.391,123.364,7.924)
O3': (57.858,117.479,8.680)
N3: (53.338,122.175,7.932)
OP1: (61.488,122.116,8.607)
OP2: (59.929,122.693,6.635)
C2: (53.839,121.135,8.677)
C1': (55.768,120.215,9.867)
C3': (57.320,118.801,8.762)
O5': (59.269,120.996,8.287)
O4': (57.073,120.613,10.239)
C5': (59.364,120.236,9.512)
P: (60.110,122.335,8.069)
C4': (58.026,119.594,9.854)
C2': (55.855,118.838,9.213)
O2': (55.481,117.919,10.222)
N1: (55.171,121.270,9.039)
O4: (53.426,124.163,6.872)
O2: (53.159,120.175,8.993)
C6: (55.908,122.370,8.644)
C5: (55.391,123.364,7.924)
O3': (57.858,117.479,8.680)
Image (generated by PyMOL):