Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0346:0347
Extra
PDB:
ATOM 1 O3' A A 345 56.639 125.255 12.526 1.00 77.35 O
ATOM 2 P G A 346 58.080 125.447 13.208 1.00 78.69 P
ATOM 3 OP1 G A 346 58.382 124.223 13.986 1.00 78.28 O
ATOM 4 OP2 G A 346 58.082 126.766 13.882 1.00 78.92 O
ATOM 5 O5' G A 346 59.099 125.477 11.982 1.00 79.71 O
ATOM 6 C5' G A 346 58.814 126.259 10.806 1.00 81.07 C
ATOM 7 C4' G A 346 58.440 125.355 9.649 1.00 81.69 C
ATOM 8 O4' G A 346 57.725 126.130 8.651 1.00 81.84 O
ATOM 9 C3' G A 346 59.570 124.647 8.900 1.00 81.99 C
ATOM 10 O3' G A 346 59.022 123.405 8.423 1.00 83.03 O
ATOM 11 C2' G A 346 59.831 125.627 7.757 1.00 81.59 C
ATOM 12 O2' G A 346 60.484 125.070 6.638 1.00 82.47 O
ATOM 13 C1' G A 346 58.400 126.038 7.414 1.00 82.07 C
ATOM 14 N9 G A 346 58.211 127.297 6.700 1.00 82.28 N
ATOM 15 C8 G A 346 59.121 128.313 6.508 1.00 83.16 C
ATOM 16 N7 G A 346 58.635 129.312 5.822 1.00 83.04 N
ATOM 17 C5 G A 346 57.328 128.933 5.544 1.00 82.86 C
ATOM 18 C6 G A 346 56.313 129.608 4.827 1.00 83.64 C
ATOM 19 O6 G A 346 56.367 130.716 4.276 1.00 85.86 O
ATOM 20 N1 G A 346 55.136 128.862 4.782 1.00 83.30 N
ATOM 21 C2 G A 346 54.960 127.627 5.359 1.00 82.27 C
ATOM 22 N2 G A 346 53.750 127.070 5.215 1.00 81.30 N
ATOM 23 N3 G A 346 55.902 126.988 6.029 1.00 81.45 N
ATOM 24 C4 G A 346 57.052 127.694 6.080 1.00 82.05 C
ATOM 25 P U A 347 59.958 122.306 7.697 1.00 83.68 P
ATOM 26 OP1 U A 347 61.284 122.216 8.372 1.00 84.06 O
ATOM 27 OP2 U A 347 59.898 122.569 6.233 1.00 83.42 O
ATOM 28 O5' U A 347 59.167 120.941 7.934 1.00 82.71 O
TER
ATOM 1 O3' G B 346 59.022 123.405 8.423 1.00 83.03 O
ATOM 2 P U B 347 59.958 122.306 7.697 1.00 83.68 P
ATOM 3 OP1 U B 347 61.284 122.216 8.372 1.00 84.06 O
ATOM 4 OP2 U B 347 59.898 122.569 6.233 1.00 83.42 O
ATOM 5 O5' U B 347 59.167 120.941 7.934 1.00 82.71 O
ATOM 6 C5' U B 347 59.245 120.229 9.192 1.00 80.29 C
ATOM 7 C4' U B 347 57.896 119.641 9.548 1.00 78.96 C
ATOM 8 O4' U B 347 56.977 120.714 9.865 1.00 78.08 O
ATOM 9 C3' U B 347 57.191 118.860 8.447 1.00 79.37 C
ATOM 10 O3' U B 347 57.672 117.516 8.376 1.00 81.56 O
ATOM 11 C2' U B 347 55.724 118.944 8.864 1.00 78.12 C
ATOM 12 O2' U B 347 55.343 118.003 9.850 1.00 77.43 O
ATOM 13 C1' U B 347 55.664 120.339 9.489 1.00 76.73 C
ATOM 14 N1 U B 347 55.076 121.403 8.659 1.00 74.92 N
ATOM 15 C2 U B 347 53.713 121.355 8.438 1.00 74.72 C
ATOM 16 O2 U B 347 53.004 120.448 8.852 1.00 75.45 O
ATOM 17 N3 U B 347 53.206 122.406 7.715 1.00 73.84 N
ATOM 18 C4 U B 347 53.905 123.473 7.197 1.00 73.24 C
ATOM 19 O4 U B 347 53.292 124.376 6.628 1.00 72.66 O
ATOM 20 C5 U B 347 55.314 123.438 7.442 1.00 73.26 C
ATOM 21 C6 U B 347 55.839 122.428 8.142 1.00 73.83 C
ATOM 22 P A B 348 57.802 116.780 6.947 1.00 82.30 P
ATOM 23 OP1 A B 348 58.446 115.458 7.190 1.00 81.65 O
ATOM 24 OP2 A B 348 58.422 117.731 5.991 1.00 82.13 O
ATOM 25 O5' A B 348 56.290 116.539 6.494 1.00 82.69 O
TER
ATOM 2 P G A 346 58.080 125.447 13.208 1.00 78.69 P
ATOM 3 OP1 G A 346 58.382 124.223 13.986 1.00 78.28 O
ATOM 4 OP2 G A 346 58.082 126.766 13.882 1.00 78.92 O
ATOM 5 O5' G A 346 59.099 125.477 11.982 1.00 79.71 O
ATOM 6 C5' G A 346 58.814 126.259 10.806 1.00 81.07 C
ATOM 7 C4' G A 346 58.440 125.355 9.649 1.00 81.69 C
ATOM 8 O4' G A 346 57.725 126.130 8.651 1.00 81.84 O
ATOM 9 C3' G A 346 59.570 124.647 8.900 1.00 81.99 C
ATOM 10 O3' G A 346 59.022 123.405 8.423 1.00 83.03 O
ATOM 11 C2' G A 346 59.831 125.627 7.757 1.00 81.59 C
ATOM 12 O2' G A 346 60.484 125.070 6.638 1.00 82.47 O
ATOM 13 C1' G A 346 58.400 126.038 7.414 1.00 82.07 C
ATOM 14 N9 G A 346 58.211 127.297 6.700 1.00 82.28 N
ATOM 15 C8 G A 346 59.121 128.313 6.508 1.00 83.16 C
ATOM 16 N7 G A 346 58.635 129.312 5.822 1.00 83.04 N
ATOM 17 C5 G A 346 57.328 128.933 5.544 1.00 82.86 C
ATOM 18 C6 G A 346 56.313 129.608 4.827 1.00 83.64 C
ATOM 19 O6 G A 346 56.367 130.716 4.276 1.00 85.86 O
ATOM 20 N1 G A 346 55.136 128.862 4.782 1.00 83.30 N
ATOM 21 C2 G A 346 54.960 127.627 5.359 1.00 82.27 C
ATOM 22 N2 G A 346 53.750 127.070 5.215 1.00 81.30 N
ATOM 23 N3 G A 346 55.902 126.988 6.029 1.00 81.45 N
ATOM 24 C4 G A 346 57.052 127.694 6.080 1.00 82.05 C
ATOM 25 P U A 347 59.958 122.306 7.697 1.00 83.68 P
ATOM 26 OP1 U A 347 61.284 122.216 8.372 1.00 84.06 O
ATOM 27 OP2 U A 347 59.898 122.569 6.233 1.00 83.42 O
ATOM 28 O5' U A 347 59.167 120.941 7.934 1.00 82.71 O
TER
ATOM 1 O3' G B 346 59.022 123.405 8.423 1.00 83.03 O
ATOM 2 P U B 347 59.958 122.306 7.697 1.00 83.68 P
ATOM 3 OP1 U B 347 61.284 122.216 8.372 1.00 84.06 O
ATOM 4 OP2 U B 347 59.898 122.569 6.233 1.00 83.42 O
ATOM 5 O5' U B 347 59.167 120.941 7.934 1.00 82.71 O
ATOM 6 C5' U B 347 59.245 120.229 9.192 1.00 80.29 C
ATOM 7 C4' U B 347 57.896 119.641 9.548 1.00 78.96 C
ATOM 8 O4' U B 347 56.977 120.714 9.865 1.00 78.08 O
ATOM 9 C3' U B 347 57.191 118.860 8.447 1.00 79.37 C
ATOM 10 O3' U B 347 57.672 117.516 8.376 1.00 81.56 O
ATOM 11 C2' U B 347 55.724 118.944 8.864 1.00 78.12 C
ATOM 12 O2' U B 347 55.343 118.003 9.850 1.00 77.43 O
ATOM 13 C1' U B 347 55.664 120.339 9.489 1.00 76.73 C
ATOM 14 N1 U B 347 55.076 121.403 8.659 1.00 74.92 N
ATOM 15 C2 U B 347 53.713 121.355 8.438 1.00 74.72 C
ATOM 16 O2 U B 347 53.004 120.448 8.852 1.00 75.45 O
ATOM 17 N3 U B 347 53.206 122.406 7.715 1.00 73.84 N
ATOM 18 C4 U B 347 53.905 123.473 7.197 1.00 73.24 C
ATOM 19 O4 U B 347 53.292 124.376 6.628 1.00 72.66 O
ATOM 20 C5 U B 347 55.314 123.438 7.442 1.00 73.26 C
ATOM 21 C6 U B 347 55.839 122.428 8.142 1.00 73.83 C
ATOM 22 P A B 348 57.802 116.780 6.947 1.00 82.30 P
ATOM 23 OP1 A B 348 58.446 115.458 7.190 1.00 81.65 O
ATOM 24 OP2 A B 348 58.422 117.731 5.991 1.00 82.13 O
ATOM 25 O5' A B 348 56.290 116.539 6.494 1.00 82.69 O
TER
Atoms:
OP1: (58.382,124.223,13.986)
OP2: (58.082,126.766,13.882)
C3': (59.570,124.647,8.900)
C1': (58.400,126.038,7.414)
C5': (58.814,126.259,10.806)
O6: (56.367,130.716,4.276)
O4': (57.725,126.130,8.651)
C8: (59.121,128.313,6.508)
C2: (54.960,127.627,5.359)
C6: (56.313,129.608,4.827)
C5: (57.328,128.933,5.544)
C4: (57.052,127.694,6.080)
P: (58.080,125.447,13.208)
C4': (58.440,125.355,9.649)
C2': (59.831,125.627,7.757)
O2': (60.484,125.070,6.638)
N1: (55.136,128.862,4.782)
N2: (53.750,127.070,5.215)
N3: (55.902,126.988,6.029)
N7: (58.635,129.312,5.822)
N9: (58.211,127.297,6.700)
O5': (59.099,125.477,11.982)
O3': (59.022,123.405,8.423)
OP2: (58.082,126.766,13.882)
C3': (59.570,124.647,8.900)
C1': (58.400,126.038,7.414)
C5': (58.814,126.259,10.806)
O6: (56.367,130.716,4.276)
O4': (57.725,126.130,8.651)
C8: (59.121,128.313,6.508)
C2: (54.960,127.627,5.359)
C6: (56.313,129.608,4.827)
C5: (57.328,128.933,5.544)
C4: (57.052,127.694,6.080)
P: (58.080,125.447,13.208)
C4': (58.440,125.355,9.649)
C2': (59.831,125.627,7.757)
O2': (60.484,125.070,6.638)
N1: (55.136,128.862,4.782)
N2: (53.750,127.070,5.215)
N3: (55.902,126.988,6.029)
N7: (58.635,129.312,5.822)
N9: (58.211,127.297,6.700)
O5': (59.099,125.477,11.982)
O3': (59.022,123.405,8.423)
C4: (53.905,123.473,7.197)
N3: (53.206,122.406,7.715)
OP1: (61.284,122.216,8.372)
OP2: (59.898,122.569,6.233)
C2: (53.713,121.355,8.438)
C1': (55.664,120.339,9.489)
C3': (57.191,118.860,8.447)
O5': (59.167,120.941,7.934)
O4': (56.977,120.714,9.865)
C5': (59.245,120.229,9.192)
P: (59.958,122.306,7.697)
C4': (57.896,119.641,9.548)
C2': (55.724,118.944,8.864)
O2': (55.343,118.003,9.850)
N1: (55.076,121.403,8.659)
O4: (53.292,124.376,6.628)
O2: (53.004,120.448,8.852)
C6: (55.839,122.428,8.142)
C5: (55.314,123.438,7.442)
O3': (57.672,117.516,8.376)
N3: (53.206,122.406,7.715)
OP1: (61.284,122.216,8.372)
OP2: (59.898,122.569,6.233)
C2: (53.713,121.355,8.438)
C1': (55.664,120.339,9.489)
C3': (57.191,118.860,8.447)
O5': (59.167,120.941,7.934)
O4': (56.977,120.714,9.865)
C5': (59.245,120.229,9.192)
P: (59.958,122.306,7.697)
C4': (57.896,119.641,9.548)
C2': (55.724,118.944,8.864)
O2': (55.343,118.003,9.850)
N1: (55.076,121.403,8.659)
O4: (53.292,124.376,6.628)
O2: (53.004,120.448,8.852)
C6: (55.839,122.428,8.142)
C5: (55.314,123.438,7.442)
O3': (57.672,117.516,8.376)
Image (generated by PyMOL):