Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0346:0347
Extra
PDB:
ATOM 1 O3' A A 345 56.749 125.336 12.586 1.00 66.34 O
ATOM 2 P G A 346 58.172 125.601 13.283 1.00 66.87 P
ATOM 3 OP1 G A 346 58.563 124.375 14.015 1.00 68.08 O
ATOM 4 OP2 G A 346 58.089 126.893 14.003 1.00 66.83 O
ATOM 5 O5' G A 346 59.178 125.742 12.055 1.00 69.26 O
ATOM 6 C5' G A 346 58.808 126.491 10.884 1.00 71.29 C
ATOM 7 C4' G A 346 58.399 125.554 9.768 1.00 72.42 C
ATOM 8 O4' G A 346 57.628 126.288 8.781 1.00 72.25 O
ATOM 9 C3' G A 346 59.515 124.861 8.990 1.00 72.64 C
ATOM 10 O3' G A 346 58.967 123.610 8.542 1.00 74.11 O
ATOM 11 C2' G A 346 59.722 125.837 7.834 1.00 72.31 C
ATOM 12 O2' G A 346 60.360 125.289 6.700 1.00 73.77 O
ATOM 13 C1' G A 346 58.272 126.209 7.527 1.00 72.29 C
ATOM 14 N9 G A 346 58.030 127.464 6.825 1.00 71.65 N
ATOM 15 C8 G A 346 58.890 128.523 6.645 1.00 72.25 C
ATOM 16 N7 G A 346 58.347 129.517 5.996 1.00 72.09 N
ATOM 17 C5 G A 346 57.056 129.084 5.727 1.00 71.87 C
ATOM 18 C6 G A 346 55.993 129.732 5.054 1.00 72.45 C
ATOM 19 O6 G A 346 55.978 130.862 4.547 1.00 74.29 O
ATOM 20 N1 G A 346 54.856 128.929 5.002 1.00 72.01 N
ATOM 21 C2 G A 346 54.754 127.666 5.532 1.00 70.18 C
ATOM 22 N2 G A 346 53.573 127.049 5.380 1.00 68.81 N
ATOM 23 N3 G A 346 55.737 127.053 6.164 1.00 69.41 N
ATOM 24 C4 G A 346 56.850 127.816 6.224 1.00 70.98 C
ATOM 25 P U A 347 59.901 122.510 7.826 1.00 74.72 P
ATOM 26 OP1 U A 347 61.219 122.424 8.516 1.00 75.28 O
ATOM 27 OP2 U A 347 59.851 122.786 6.365 1.00 76.15 O
ATOM 28 O5' U A 347 59.109 121.143 8.040 1.00 74.63 O
TER
ATOM 1 O3' G B 346 58.967 123.610 8.542 1.00 74.11 O
ATOM 2 P U B 347 59.901 122.510 7.826 1.00 74.72 P
ATOM 3 OP1 U B 347 61.219 122.424 8.516 1.00 75.28 O
ATOM 4 OP2 U B 347 59.851 122.786 6.365 1.00 76.15 O
ATOM 5 O5' U B 347 59.109 121.143 8.040 1.00 74.63 O
ATOM 6 C5' U B 347 59.213 120.387 9.267 1.00 72.29 C
ATOM 7 C4' U B 347 57.882 119.745 9.596 1.00 71.54 C
ATOM 8 O4' U B 347 56.921 120.777 9.936 1.00 70.43 O
ATOM 9 C3' U B 347 57.220 118.974 8.463 1.00 72.10 C
ATOM 10 O3' U B 347 57.744 117.646 8.371 1.00 75.21 O
ATOM 11 C2' U B 347 55.746 118.998 8.860 1.00 70.42 C
ATOM 12 O2' U B 347 55.401 118.010 9.809 1.00 69.29 O
ATOM 13 C1' U B 347 55.627 120.374 9.525 1.00 69.44 C
ATOM 14 N1 U B 347 55.022 121.444 8.712 1.00 68.57 N
ATOM 15 C2 U B 347 53.663 121.354 8.440 1.00 67.74 C
ATOM 16 O2 U B 347 52.971 120.419 8.807 1.00 67.76 O
ATOM 17 N3 U B 347 53.145 122.400 7.718 1.00 67.55 N
ATOM 18 C4 U B 347 53.823 123.504 7.246 1.00 67.92 C
ATOM 19 O4 U B 347 53.198 124.386 6.651 1.00 68.47 O
ATOM 20 C5 U B 347 55.225 123.521 7.549 1.00 67.26 C
ATOM 21 C6 U B 347 55.764 122.515 8.250 1.00 67.71 C
ATOM 22 P A B 348 57.746 116.873 6.955 1.00 77.20 P
ATOM 23 OP1 A B 348 58.328 115.524 7.208 1.00 75.94 O
ATOM 24 OP2 A B 348 58.359 117.749 5.924 1.00 76.27 O
ATOM 25 O5' A B 348 56.197 116.707 6.602 1.00 76.15 O
TER
ATOM 2 P G A 346 58.172 125.601 13.283 1.00 66.87 P
ATOM 3 OP1 G A 346 58.563 124.375 14.015 1.00 68.08 O
ATOM 4 OP2 G A 346 58.089 126.893 14.003 1.00 66.83 O
ATOM 5 O5' G A 346 59.178 125.742 12.055 1.00 69.26 O
ATOM 6 C5' G A 346 58.808 126.491 10.884 1.00 71.29 C
ATOM 7 C4' G A 346 58.399 125.554 9.768 1.00 72.42 C
ATOM 8 O4' G A 346 57.628 126.288 8.781 1.00 72.25 O
ATOM 9 C3' G A 346 59.515 124.861 8.990 1.00 72.64 C
ATOM 10 O3' G A 346 58.967 123.610 8.542 1.00 74.11 O
ATOM 11 C2' G A 346 59.722 125.837 7.834 1.00 72.31 C
ATOM 12 O2' G A 346 60.360 125.289 6.700 1.00 73.77 O
ATOM 13 C1' G A 346 58.272 126.209 7.527 1.00 72.29 C
ATOM 14 N9 G A 346 58.030 127.464 6.825 1.00 71.65 N
ATOM 15 C8 G A 346 58.890 128.523 6.645 1.00 72.25 C
ATOM 16 N7 G A 346 58.347 129.517 5.996 1.00 72.09 N
ATOM 17 C5 G A 346 57.056 129.084 5.727 1.00 71.87 C
ATOM 18 C6 G A 346 55.993 129.732 5.054 1.00 72.45 C
ATOM 19 O6 G A 346 55.978 130.862 4.547 1.00 74.29 O
ATOM 20 N1 G A 346 54.856 128.929 5.002 1.00 72.01 N
ATOM 21 C2 G A 346 54.754 127.666 5.532 1.00 70.18 C
ATOM 22 N2 G A 346 53.573 127.049 5.380 1.00 68.81 N
ATOM 23 N3 G A 346 55.737 127.053 6.164 1.00 69.41 N
ATOM 24 C4 G A 346 56.850 127.816 6.224 1.00 70.98 C
ATOM 25 P U A 347 59.901 122.510 7.826 1.00 74.72 P
ATOM 26 OP1 U A 347 61.219 122.424 8.516 1.00 75.28 O
ATOM 27 OP2 U A 347 59.851 122.786 6.365 1.00 76.15 O
ATOM 28 O5' U A 347 59.109 121.143 8.040 1.00 74.63 O
TER
ATOM 1 O3' G B 346 58.967 123.610 8.542 1.00 74.11 O
ATOM 2 P U B 347 59.901 122.510 7.826 1.00 74.72 P
ATOM 3 OP1 U B 347 61.219 122.424 8.516 1.00 75.28 O
ATOM 4 OP2 U B 347 59.851 122.786 6.365 1.00 76.15 O
ATOM 5 O5' U B 347 59.109 121.143 8.040 1.00 74.63 O
ATOM 6 C5' U B 347 59.213 120.387 9.267 1.00 72.29 C
ATOM 7 C4' U B 347 57.882 119.745 9.596 1.00 71.54 C
ATOM 8 O4' U B 347 56.921 120.777 9.936 1.00 70.43 O
ATOM 9 C3' U B 347 57.220 118.974 8.463 1.00 72.10 C
ATOM 10 O3' U B 347 57.744 117.646 8.371 1.00 75.21 O
ATOM 11 C2' U B 347 55.746 118.998 8.860 1.00 70.42 C
ATOM 12 O2' U B 347 55.401 118.010 9.809 1.00 69.29 O
ATOM 13 C1' U B 347 55.627 120.374 9.525 1.00 69.44 C
ATOM 14 N1 U B 347 55.022 121.444 8.712 1.00 68.57 N
ATOM 15 C2 U B 347 53.663 121.354 8.440 1.00 67.74 C
ATOM 16 O2 U B 347 52.971 120.419 8.807 1.00 67.76 O
ATOM 17 N3 U B 347 53.145 122.400 7.718 1.00 67.55 N
ATOM 18 C4 U B 347 53.823 123.504 7.246 1.00 67.92 C
ATOM 19 O4 U B 347 53.198 124.386 6.651 1.00 68.47 O
ATOM 20 C5 U B 347 55.225 123.521 7.549 1.00 67.26 C
ATOM 21 C6 U B 347 55.764 122.515 8.250 1.00 67.71 C
ATOM 22 P A B 348 57.746 116.873 6.955 1.00 77.20 P
ATOM 23 OP1 A B 348 58.328 115.524 7.208 1.00 75.94 O
ATOM 24 OP2 A B 348 58.359 117.749 5.924 1.00 76.27 O
ATOM 25 O5' A B 348 56.197 116.707 6.602 1.00 76.15 O
TER
Atoms:
OP1: (58.563,124.375,14.015)
OP2: (58.089,126.893,14.003)
C3': (59.515,124.861,8.990)
C1': (58.272,126.209,7.527)
C5': (58.808,126.491,10.884)
O6: (55.978,130.862,4.547)
O4': (57.628,126.288,8.781)
C8: (58.890,128.523,6.645)
C2: (54.754,127.666,5.532)
C6: (55.993,129.732,5.054)
C5: (57.056,129.084,5.727)
C4: (56.850,127.816,6.224)
P: (58.172,125.601,13.283)
C4': (58.399,125.554,9.768)
C2': (59.722,125.837,7.834)
O2': (60.360,125.289,6.700)
N1: (54.856,128.929,5.002)
N2: (53.573,127.049,5.380)
N3: (55.737,127.053,6.164)
N7: (58.347,129.517,5.996)
N9: (58.030,127.464,6.825)
O5': (59.178,125.742,12.055)
O3': (58.967,123.610,8.542)
OP2: (58.089,126.893,14.003)
C3': (59.515,124.861,8.990)
C1': (58.272,126.209,7.527)
C5': (58.808,126.491,10.884)
O6: (55.978,130.862,4.547)
O4': (57.628,126.288,8.781)
C8: (58.890,128.523,6.645)
C2: (54.754,127.666,5.532)
C6: (55.993,129.732,5.054)
C5: (57.056,129.084,5.727)
C4: (56.850,127.816,6.224)
P: (58.172,125.601,13.283)
C4': (58.399,125.554,9.768)
C2': (59.722,125.837,7.834)
O2': (60.360,125.289,6.700)
N1: (54.856,128.929,5.002)
N2: (53.573,127.049,5.380)
N3: (55.737,127.053,6.164)
N7: (58.347,129.517,5.996)
N9: (58.030,127.464,6.825)
O5': (59.178,125.742,12.055)
O3': (58.967,123.610,8.542)
C4: (53.823,123.504,7.246)
N3: (53.145,122.400,7.718)
OP1: (61.219,122.424,8.516)
OP2: (59.851,122.786,6.365)
C2: (53.663,121.354,8.440)
C1': (55.627,120.374,9.525)
C3': (57.220,118.974,8.463)
O5': (59.109,121.143,8.040)
O4': (56.921,120.777,9.936)
C5': (59.213,120.387,9.267)
P: (59.901,122.510,7.826)
C4': (57.882,119.745,9.596)
C2': (55.746,118.998,8.860)
O2': (55.401,118.010,9.809)
N1: (55.022,121.444,8.712)
O4: (53.198,124.386,6.651)
O2: (52.971,120.419,8.807)
C6: (55.764,122.515,8.250)
C5: (55.225,123.521,7.549)
O3': (57.744,117.646,8.371)
N3: (53.145,122.400,7.718)
OP1: (61.219,122.424,8.516)
OP2: (59.851,122.786,6.365)
C2: (53.663,121.354,8.440)
C1': (55.627,120.374,9.525)
C3': (57.220,118.974,8.463)
O5': (59.109,121.143,8.040)
O4': (56.921,120.777,9.936)
C5': (59.213,120.387,9.267)
P: (59.901,122.510,7.826)
C4': (57.882,119.745,9.596)
C2': (55.746,118.998,8.860)
O2': (55.401,118.010,9.809)
N1: (55.022,121.444,8.712)
O4: (53.198,124.386,6.651)
O2: (52.971,120.419,8.807)
C6: (55.764,122.515,8.250)
C5: (55.225,123.521,7.549)
O3': (57.744,117.646,8.371)
Image (generated by PyMOL):