Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0346:0347
Extra
PDB:
ATOM 1 O3' A A 345 57.053 125.323 12.662 1.00 88.44 O
ATOM 2 P G A 346 58.449 125.686 13.365 1.00 90.36 P
ATOM 3 OP1 G A 346 58.807 124.564 14.264 1.00 91.34 O
ATOM 4 OP2 G A 346 58.342 127.063 13.913 1.00 91.13 O
ATOM 5 O5' G A 346 59.488 125.693 12.155 1.00 92.04 O
ATOM 6 C5' G A 346 59.203 126.435 10.954 1.00 93.42 C
ATOM 7 C4' G A 346 58.798 125.496 9.836 1.00 94.14 C
ATOM 8 O4' G A 346 58.008 126.231 8.859 1.00 93.46 O
ATOM 9 C3' G A 346 59.924 124.828 9.049 1.00 94.24 C
ATOM 10 O3' G A 346 59.426 123.559 8.583 1.00 96.32 O
ATOM 11 C2' G A 346 60.107 125.813 7.895 1.00 93.52 C
ATOM 12 O2' G A 346 60.746 125.276 6.756 1.00 93.78 O
ATOM 13 C1' G A 346 58.649 126.178 7.601 1.00 92.70 C
ATOM 14 N9 G A 346 58.409 127.446 6.919 1.00 90.84 N
ATOM 15 C8 G A 346 59.278 128.503 6.770 1.00 90.43 C
ATOM 16 N7 G A 346 58.759 129.504 6.111 1.00 90.18 N
ATOM 17 C5 G A 346 57.470 129.083 5.806 1.00 90.10 C
ATOM 18 C6 G A 346 56.431 129.746 5.102 1.00 90.31 C
ATOM 19 O6 G A 346 56.445 130.873 4.592 1.00 91.59 O
ATOM 20 N1 G A 346 55.283 128.959 5.022 1.00 89.88 N
ATOM 21 C2 G A 346 55.150 127.700 5.554 1.00 89.28 C
ATOM 22 N2 G A 346 53.957 127.110 5.381 1.00 87.93 N
ATOM 23 N3 G A 346 56.113 127.069 6.209 1.00 89.50 N
ATOM 24 C4 G A 346 57.239 127.816 6.296 1.00 90.19 C
ATOM 25 P U A 347 60.440 122.410 8.066 1.00 97.26 P
ATOM 26 OP1 U A 347 61.624 122.323 8.970 1.00 97.54 O
ATOM 27 OP2 U A 347 60.646 122.626 6.607 1.00 97.15 O
ATOM 28 O5' U A 347 59.586 121.068 8.210 1.00 96.15 O
TER
ATOM 1 O3' G B 346 59.426 123.559 8.583 1.00 96.32 O
ATOM 2 P U B 347 60.440 122.410 8.066 1.00 97.26 P
ATOM 3 OP1 U B 347 61.624 122.323 8.970 1.00 97.54 O
ATOM 4 OP2 U B 347 60.646 122.626 6.607 1.00 97.15 O
ATOM 5 O5' U B 347 59.586 121.068 8.210 1.00 96.15 O
ATOM 6 C5' U B 347 59.584 120.296 9.436 1.00 93.57 C
ATOM 7 C4' U B 347 58.202 119.738 9.701 1.00 92.42 C
ATOM 8 O4' U B 347 57.293 120.835 9.960 1.00 91.63 O
ATOM 9 C3' U B 347 57.551 118.983 8.550 1.00 92.80 C
ATOM 10 O3' U B 347 58.001 117.625 8.528 1.00 94.80 O
ATOM 11 C2' U B 347 56.060 119.102 8.866 1.00 91.12 C
ATOM 12 O2' U B 347 55.589 118.158 9.804 1.00 91.30 O
ATOM 13 C1' U B 347 55.993 120.479 9.531 1.00 90.22 C
ATOM 14 N1 U B 347 55.431 121.578 8.734 1.00 89.17 N
ATOM 15 C2 U B 347 54.070 121.538 8.458 1.00 88.85 C
ATOM 16 O2 U B 347 53.345 120.613 8.805 1.00 88.37 O
ATOM 17 N3 U B 347 53.590 122.622 7.764 1.00 88.64 N
ATOM 18 C4 U B 347 54.312 123.718 7.324 1.00 88.42 C
ATOM 19 O4 U B 347 53.716 124.658 6.792 1.00 88.52 O
ATOM 20 C5 U B 347 55.715 123.672 7.623 1.00 87.93 C
ATOM 21 C6 U B 347 56.214 122.630 8.295 1.00 88.09 C
ATOM 22 P A B 348 58.071 116.814 7.135 1.00 95.82 P
ATOM 23 OP1 A B 348 58.655 115.478 7.461 1.00 94.74 O
ATOM 24 OP2 A B 348 58.720 117.666 6.101 1.00 94.67 O
ATOM 25 O5' A B 348 56.539 116.619 6.729 1.00 95.25 O
TER
ATOM 2 P G A 346 58.449 125.686 13.365 1.00 90.36 P
ATOM 3 OP1 G A 346 58.807 124.564 14.264 1.00 91.34 O
ATOM 4 OP2 G A 346 58.342 127.063 13.913 1.00 91.13 O
ATOM 5 O5' G A 346 59.488 125.693 12.155 1.00 92.04 O
ATOM 6 C5' G A 346 59.203 126.435 10.954 1.00 93.42 C
ATOM 7 C4' G A 346 58.798 125.496 9.836 1.00 94.14 C
ATOM 8 O4' G A 346 58.008 126.231 8.859 1.00 93.46 O
ATOM 9 C3' G A 346 59.924 124.828 9.049 1.00 94.24 C
ATOM 10 O3' G A 346 59.426 123.559 8.583 1.00 96.32 O
ATOM 11 C2' G A 346 60.107 125.813 7.895 1.00 93.52 C
ATOM 12 O2' G A 346 60.746 125.276 6.756 1.00 93.78 O
ATOM 13 C1' G A 346 58.649 126.178 7.601 1.00 92.70 C
ATOM 14 N9 G A 346 58.409 127.446 6.919 1.00 90.84 N
ATOM 15 C8 G A 346 59.278 128.503 6.770 1.00 90.43 C
ATOM 16 N7 G A 346 58.759 129.504 6.111 1.00 90.18 N
ATOM 17 C5 G A 346 57.470 129.083 5.806 1.00 90.10 C
ATOM 18 C6 G A 346 56.431 129.746 5.102 1.00 90.31 C
ATOM 19 O6 G A 346 56.445 130.873 4.592 1.00 91.59 O
ATOM 20 N1 G A 346 55.283 128.959 5.022 1.00 89.88 N
ATOM 21 C2 G A 346 55.150 127.700 5.554 1.00 89.28 C
ATOM 22 N2 G A 346 53.957 127.110 5.381 1.00 87.93 N
ATOM 23 N3 G A 346 56.113 127.069 6.209 1.00 89.50 N
ATOM 24 C4 G A 346 57.239 127.816 6.296 1.00 90.19 C
ATOM 25 P U A 347 60.440 122.410 8.066 1.00 97.26 P
ATOM 26 OP1 U A 347 61.624 122.323 8.970 1.00 97.54 O
ATOM 27 OP2 U A 347 60.646 122.626 6.607 1.00 97.15 O
ATOM 28 O5' U A 347 59.586 121.068 8.210 1.00 96.15 O
TER
ATOM 1 O3' G B 346 59.426 123.559 8.583 1.00 96.32 O
ATOM 2 P U B 347 60.440 122.410 8.066 1.00 97.26 P
ATOM 3 OP1 U B 347 61.624 122.323 8.970 1.00 97.54 O
ATOM 4 OP2 U B 347 60.646 122.626 6.607 1.00 97.15 O
ATOM 5 O5' U B 347 59.586 121.068 8.210 1.00 96.15 O
ATOM 6 C5' U B 347 59.584 120.296 9.436 1.00 93.57 C
ATOM 7 C4' U B 347 58.202 119.738 9.701 1.00 92.42 C
ATOM 8 O4' U B 347 57.293 120.835 9.960 1.00 91.63 O
ATOM 9 C3' U B 347 57.551 118.983 8.550 1.00 92.80 C
ATOM 10 O3' U B 347 58.001 117.625 8.528 1.00 94.80 O
ATOM 11 C2' U B 347 56.060 119.102 8.866 1.00 91.12 C
ATOM 12 O2' U B 347 55.589 118.158 9.804 1.00 91.30 O
ATOM 13 C1' U B 347 55.993 120.479 9.531 1.00 90.22 C
ATOM 14 N1 U B 347 55.431 121.578 8.734 1.00 89.17 N
ATOM 15 C2 U B 347 54.070 121.538 8.458 1.00 88.85 C
ATOM 16 O2 U B 347 53.345 120.613 8.805 1.00 88.37 O
ATOM 17 N3 U B 347 53.590 122.622 7.764 1.00 88.64 N
ATOM 18 C4 U B 347 54.312 123.718 7.324 1.00 88.42 C
ATOM 19 O4 U B 347 53.716 124.658 6.792 1.00 88.52 O
ATOM 20 C5 U B 347 55.715 123.672 7.623 1.00 87.93 C
ATOM 21 C6 U B 347 56.214 122.630 8.295 1.00 88.09 C
ATOM 22 P A B 348 58.071 116.814 7.135 1.00 95.82 P
ATOM 23 OP1 A B 348 58.655 115.478 7.461 1.00 94.74 O
ATOM 24 OP2 A B 348 58.720 117.666 6.101 1.00 94.67 O
ATOM 25 O5' A B 348 56.539 116.619 6.729 1.00 95.25 O
TER
Atoms:
OP1: (58.807,124.564,14.264)
OP2: (58.342,127.063,13.913)
C3': (59.924,124.828,9.049)
C1': (58.649,126.178,7.601)
C5': (59.203,126.435,10.954)
O6: (56.445,130.873,4.592)
O4': (58.008,126.231,8.859)
C8: (59.278,128.503,6.770)
C2: (55.150,127.700,5.554)
C6: (56.431,129.746,5.102)
C5: (57.470,129.083,5.806)
C4: (57.239,127.816,6.296)
P: (58.449,125.686,13.365)
C4': (58.798,125.496,9.836)
C2': (60.107,125.813,7.895)
O2': (60.746,125.276,6.756)
N1: (55.283,128.959,5.022)
N2: (53.957,127.110,5.381)
N3: (56.113,127.069,6.209)
N7: (58.759,129.504,6.111)
N9: (58.409,127.446,6.919)
O5': (59.488,125.693,12.155)
O3': (59.426,123.559,8.583)
OP2: (58.342,127.063,13.913)
C3': (59.924,124.828,9.049)
C1': (58.649,126.178,7.601)
C5': (59.203,126.435,10.954)
O6: (56.445,130.873,4.592)
O4': (58.008,126.231,8.859)
C8: (59.278,128.503,6.770)
C2: (55.150,127.700,5.554)
C6: (56.431,129.746,5.102)
C5: (57.470,129.083,5.806)
C4: (57.239,127.816,6.296)
P: (58.449,125.686,13.365)
C4': (58.798,125.496,9.836)
C2': (60.107,125.813,7.895)
O2': (60.746,125.276,6.756)
N1: (55.283,128.959,5.022)
N2: (53.957,127.110,5.381)
N3: (56.113,127.069,6.209)
N7: (58.759,129.504,6.111)
N9: (58.409,127.446,6.919)
O5': (59.488,125.693,12.155)
O3': (59.426,123.559,8.583)
C4: (54.312,123.718,7.324)
N3: (53.590,122.622,7.764)
OP1: (61.624,122.323,8.970)
OP2: (60.646,122.626,6.607)
C2: (54.070,121.538,8.458)
C1': (55.993,120.479,9.531)
C3': (57.551,118.983,8.550)
O5': (59.586,121.068,8.210)
O4': (57.293,120.835,9.960)
C5': (59.584,120.296,9.436)
P: (60.440,122.410,8.066)
C4': (58.202,119.738,9.701)
C2': (56.060,119.102,8.866)
O2': (55.589,118.158,9.804)
N1: (55.431,121.578,8.734)
O4: (53.716,124.658,6.792)
O2: (53.345,120.613,8.805)
C6: (56.214,122.630,8.295)
C5: (55.715,123.672,7.623)
O3': (58.001,117.625,8.528)
N3: (53.590,122.622,7.764)
OP1: (61.624,122.323,8.970)
OP2: (60.646,122.626,6.607)
C2: (54.070,121.538,8.458)
C1': (55.993,120.479,9.531)
C3': (57.551,118.983,8.550)
O5': (59.586,121.068,8.210)
O4': (57.293,120.835,9.960)
C5': (59.584,120.296,9.436)
P: (60.440,122.410,8.066)
C4': (58.202,119.738,9.701)
C2': (56.060,119.102,8.866)
O2': (55.589,118.158,9.804)
N1: (55.431,121.578,8.734)
O4: (53.716,124.658,6.792)
O2: (53.345,120.613,8.805)
C6: (56.214,122.630,8.295)
C5: (55.715,123.672,7.623)
O3': (58.001,117.625,8.528)
Image (generated by PyMOL):