Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2XD0:V24:V25
Extra
PDB:
ATOM 1 O3' A A 23 6.221 13.647 3.583 1.00 64.35 O
ATOM 2 P G A 24 5.722 12.982 2.220 1.00 63.75 P
ATOM 3 OP1 G A 24 5.804 11.516 2.484 1.00 62.40 O
ATOM 4 OP2 G A 24 6.551 13.653 1.174 1.00 64.49 O
ATOM 5 O5' G A 24 4.205 13.429 2.009 1.00 64.24 O
ATOM 6 C5' G A 24 3.205 12.974 2.909 1.00 63.88 C
ATOM 7 C4' G A 24 1.842 12.839 2.268 1.00 64.03 C
ATOM 8 O4' G A 24 1.164 14.118 2.188 1.00 65.39 O
ATOM 9 C3' G A 24 1.752 12.238 0.868 1.00 63.61 C
ATOM 10 O3' G A 24 0.539 11.498 0.834 1.00 63.29 O
ATOM 11 C2' G A 24 1.545 13.464 -0.003 1.00 64.94 C
ATOM 12 O2' G A 24 0.912 13.160 -1.220 1.00 65.02 O
ATOM 13 C1' G A 24 0.626 14.276 0.893 1.00 65.85 C
ATOM 14 N9 G A 24 0.524 15.710 0.616 1.00 67.39 N
ATOM 15 C8 G A 24 1.454 16.547 0.059 1.00 68.16 C
ATOM 16 N7 G A 24 1.029 17.781 -0.014 1.00 69.66 N
ATOM 17 C5 G A 24 -0.254 17.767 0.536 1.00 69.87 C
ATOM 18 C6 G A 24 -1.222 18.807 0.735 1.00 71.34 C
ATOM 19 O6 G A 24 -1.166 20.013 0.460 1.00 72.81 O
ATOM 20 N1 G A 24 -2.384 18.328 1.325 1.00 71.11 N
ATOM 21 C2 G A 24 -2.597 17.022 1.681 1.00 69.71 C
ATOM 22 N2 G A 24 -3.788 16.759 2.231 1.00 69.91 N
ATOM 23 N3 G A 24 -1.714 16.049 1.509 1.00 68.35 N
ATOM 24 C4 G A 24 -0.573 16.485 0.928 1.00 68.49 C
ATOM 25 P U A 25 0.178 10.391 -0.250 1.00 62.55 P
ATOM 26 OP1 U A 25 1.441 10.031 -0.935 1.00 61.90 O
ATOM 27 OP2 U A 25 -1.016 10.911 -0.955 1.00 63.56 O
ATOM 28 O5' U A 25 -0.321 9.200 0.660 1.00 61.68 O
TER
ATOM 1 O3' G B 24 0.539 11.498 0.834 1.00 63.29 O
ATOM 2 P U B 25 0.178 10.391 -0.250 1.00 62.55 P
ATOM 3 OP1 U B 25 1.441 10.031 -0.935 1.00 61.90 O
ATOM 4 OP2 U B 25 -1.016 10.911 -0.955 1.00 63.56 O
ATOM 5 O5' U B 25 -0.321 9.200 0.660 1.00 61.68 O
ATOM 6 C5' U B 25 0.588 8.536 1.520 1.00 60.81 C
ATOM 7 C4' U B 25 -0.051 8.152 2.827 1.00 60.78 C
ATOM 8 O4' U B 25 0.056 9.256 3.754 1.00 61.59 O
ATOM 9 C3' U B 25 -1.536 7.823 2.817 1.00 61.16 C
ATOM 10 O3' U B 25 -1.816 6.520 2.348 1.00 60.40 O
ATOM 11 C2' U B 25 -1.896 8.021 4.282 1.00 61.55 C
ATOM 12 O2' U B 25 -1.450 6.929 5.078 1.00 60.75 O
ATOM 13 C1' U B 25 -1.044 9.239 4.633 1.00 62.04 C
ATOM 14 N1 U B 25 -1.792 10.488 4.444 1.00 63.24 N
ATOM 15 C2 U B 25 -2.901 10.669 5.230 1.00 63.92 C
ATOM 16 O2 U B 25 -3.280 9.854 6.053 1.00 63.60 O
ATOM 17 N3 U B 25 -3.562 11.841 5.007 1.00 65.13 N
ATOM 18 C4 U B 25 -3.232 12.827 4.119 1.00 65.77 C
ATOM 19 O4 U B 25 -3.941 13.822 4.059 1.00 66.99 O
ATOM 20 C5 U B 25 -2.066 12.570 3.351 1.00 65.03 C
ATOM 21 C6 U B 25 -1.402 11.430 3.534 1.00 63.80 C
ATOM 22 P G B 26 -3.288 6.138 1.840 1.00 60.91 P
ATOM 23 OP1 G B 26 -3.221 4.666 1.665 1.00 59.97 O
ATOM 24 OP2 G B 26 -3.573 6.983 0.653 1.00 61.62 O
ATOM 25 O5' G B 26 -4.283 6.535 3.028 1.00 61.80 O
TER
ATOM 2 P G A 24 5.722 12.982 2.220 1.00 63.75 P
ATOM 3 OP1 G A 24 5.804 11.516 2.484 1.00 62.40 O
ATOM 4 OP2 G A 24 6.551 13.653 1.174 1.00 64.49 O
ATOM 5 O5' G A 24 4.205 13.429 2.009 1.00 64.24 O
ATOM 6 C5' G A 24 3.205 12.974 2.909 1.00 63.88 C
ATOM 7 C4' G A 24 1.842 12.839 2.268 1.00 64.03 C
ATOM 8 O4' G A 24 1.164 14.118 2.188 1.00 65.39 O
ATOM 9 C3' G A 24 1.752 12.238 0.868 1.00 63.61 C
ATOM 10 O3' G A 24 0.539 11.498 0.834 1.00 63.29 O
ATOM 11 C2' G A 24 1.545 13.464 -0.003 1.00 64.94 C
ATOM 12 O2' G A 24 0.912 13.160 -1.220 1.00 65.02 O
ATOM 13 C1' G A 24 0.626 14.276 0.893 1.00 65.85 C
ATOM 14 N9 G A 24 0.524 15.710 0.616 1.00 67.39 N
ATOM 15 C8 G A 24 1.454 16.547 0.059 1.00 68.16 C
ATOM 16 N7 G A 24 1.029 17.781 -0.014 1.00 69.66 N
ATOM 17 C5 G A 24 -0.254 17.767 0.536 1.00 69.87 C
ATOM 18 C6 G A 24 -1.222 18.807 0.735 1.00 71.34 C
ATOM 19 O6 G A 24 -1.166 20.013 0.460 1.00 72.81 O
ATOM 20 N1 G A 24 -2.384 18.328 1.325 1.00 71.11 N
ATOM 21 C2 G A 24 -2.597 17.022 1.681 1.00 69.71 C
ATOM 22 N2 G A 24 -3.788 16.759 2.231 1.00 69.91 N
ATOM 23 N3 G A 24 -1.714 16.049 1.509 1.00 68.35 N
ATOM 24 C4 G A 24 -0.573 16.485 0.928 1.00 68.49 C
ATOM 25 P U A 25 0.178 10.391 -0.250 1.00 62.55 P
ATOM 26 OP1 U A 25 1.441 10.031 -0.935 1.00 61.90 O
ATOM 27 OP2 U A 25 -1.016 10.911 -0.955 1.00 63.56 O
ATOM 28 O5' U A 25 -0.321 9.200 0.660 1.00 61.68 O
TER
ATOM 1 O3' G B 24 0.539 11.498 0.834 1.00 63.29 O
ATOM 2 P U B 25 0.178 10.391 -0.250 1.00 62.55 P
ATOM 3 OP1 U B 25 1.441 10.031 -0.935 1.00 61.90 O
ATOM 4 OP2 U B 25 -1.016 10.911 -0.955 1.00 63.56 O
ATOM 5 O5' U B 25 -0.321 9.200 0.660 1.00 61.68 O
ATOM 6 C5' U B 25 0.588 8.536 1.520 1.00 60.81 C
ATOM 7 C4' U B 25 -0.051 8.152 2.827 1.00 60.78 C
ATOM 8 O4' U B 25 0.056 9.256 3.754 1.00 61.59 O
ATOM 9 C3' U B 25 -1.536 7.823 2.817 1.00 61.16 C
ATOM 10 O3' U B 25 -1.816 6.520 2.348 1.00 60.40 O
ATOM 11 C2' U B 25 -1.896 8.021 4.282 1.00 61.55 C
ATOM 12 O2' U B 25 -1.450 6.929 5.078 1.00 60.75 O
ATOM 13 C1' U B 25 -1.044 9.239 4.633 1.00 62.04 C
ATOM 14 N1 U B 25 -1.792 10.488 4.444 1.00 63.24 N
ATOM 15 C2 U B 25 -2.901 10.669 5.230 1.00 63.92 C
ATOM 16 O2 U B 25 -3.280 9.854 6.053 1.00 63.60 O
ATOM 17 N3 U B 25 -3.562 11.841 5.007 1.00 65.13 N
ATOM 18 C4 U B 25 -3.232 12.827 4.119 1.00 65.77 C
ATOM 19 O4 U B 25 -3.941 13.822 4.059 1.00 66.99 O
ATOM 20 C5 U B 25 -2.066 12.570 3.351 1.00 65.03 C
ATOM 21 C6 U B 25 -1.402 11.430 3.534 1.00 63.80 C
ATOM 22 P G B 26 -3.288 6.138 1.840 1.00 60.91 P
ATOM 23 OP1 G B 26 -3.221 4.666 1.665 1.00 59.97 O
ATOM 24 OP2 G B 26 -3.573 6.983 0.653 1.00 61.62 O
ATOM 25 O5' G B 26 -4.283 6.535 3.028 1.00 61.80 O
TER
Atoms:
OP1: (5.804,11.516,2.484)
OP2: (6.551,13.653,1.174)
C3': (1.752,12.238,0.868)
C1': (0.626,14.276,0.893)
C5': (3.205,12.974,2.909)
O6: (-1.166,20.013,0.460)
O4': (1.164,14.118,2.188)
C8: (1.454,16.547,0.059)
C2: (-2.597,17.022,1.681)
C6: (-1.222,18.807,0.735)
C5: (-0.254,17.767,0.536)
C4: (-0.573,16.485,0.928)
P: (5.722,12.982,2.220)
C4': (1.842,12.839,2.268)
C2': (1.545,13.464,-0.003)
O2': (0.912,13.160,-1.220)
N1: (-2.384,18.328,1.325)
N2: (-3.788,16.759,2.231)
N3: (-1.714,16.049,1.509)
N7: (1.029,17.781,-0.014)
N9: (0.524,15.710,0.616)
O5': (4.205,13.429,2.009)
O3': (0.539,11.498,0.834)
OP2: (6.551,13.653,1.174)
C3': (1.752,12.238,0.868)
C1': (0.626,14.276,0.893)
C5': (3.205,12.974,2.909)
O6: (-1.166,20.013,0.460)
O4': (1.164,14.118,2.188)
C8: (1.454,16.547,0.059)
C2: (-2.597,17.022,1.681)
C6: (-1.222,18.807,0.735)
C5: (-0.254,17.767,0.536)
C4: (-0.573,16.485,0.928)
P: (5.722,12.982,2.220)
C4': (1.842,12.839,2.268)
C2': (1.545,13.464,-0.003)
O2': (0.912,13.160,-1.220)
N1: (-2.384,18.328,1.325)
N2: (-3.788,16.759,2.231)
N3: (-1.714,16.049,1.509)
N7: (1.029,17.781,-0.014)
N9: (0.524,15.710,0.616)
O5': (4.205,13.429,2.009)
O3': (0.539,11.498,0.834)
C4: (-3.232,12.827,4.119)
N3: (-3.562,11.841,5.007)
OP1: (1.441,10.031,-0.935)
OP2: (-1.016,10.911,-0.955)
C2: (-2.901,10.669,5.230)
C1': (-1.044,9.239,4.633)
C3': (-1.536,7.823,2.817)
O5': (-0.321,9.200,0.660)
O4': (0.056,9.256,3.754)
C5': (0.588,8.536,1.520)
P: (0.178,10.391,-0.250)
C4': (-0.051,8.152,2.827)
C2': (-1.896,8.021,4.282)
O2': (-1.450,6.929,5.078)
N1: (-1.792,10.488,4.444)
O4: (-3.941,13.822,4.059)
O2: (-3.280,9.854,6.053)
C6: (-1.402,11.430,3.534)
C5: (-2.066,12.570,3.351)
O3': (-1.816,6.520,2.348)
N3: (-3.562,11.841,5.007)
OP1: (1.441,10.031,-0.935)
OP2: (-1.016,10.911,-0.955)
C2: (-2.901,10.669,5.230)
C1': (-1.044,9.239,4.633)
C3': (-1.536,7.823,2.817)
O5': (-0.321,9.200,0.660)
O4': (0.056,9.256,3.754)
C5': (0.588,8.536,1.520)
P: (0.178,10.391,-0.250)
C4': (-0.051,8.152,2.827)
C2': (-1.896,8.021,4.282)
O2': (-1.450,6.929,5.078)
N1: (-1.792,10.488,4.444)
O4: (-3.941,13.822,4.059)
O2: (-3.280,9.854,6.053)
C6: (-1.402,11.430,3.534)
C5: (-2.066,12.570,3.351)
O3': (-1.816,6.520,2.348)
Image (generated by PyMOL):