Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3RKF:A47:A48
Extra
PDB:
ATOM 1 O3' U A 46 11.330 4.575 -35.113 1.00 45.99 O
ATOM 2 P G A 47 11.073 6.153 -35.277 1.00 51.07 P
ATOM 3 OP1 G A 47 12.194 6.696 -36.082 1.00 48.89 O
ATOM 4 OP2 G A 47 10.842 6.700 -33.919 1.00 41.99 O
ATOM 5 O5' G A 47 9.723 6.209 -36.120 1.00 45.61 O
ATOM 6 C5' G A 47 9.438 5.223 -37.107 1.00 45.56 C
ATOM 7 C4' G A 47 8.063 5.402 -37.706 1.00 49.40 C
ATOM 8 O4' G A 47 7.086 5.554 -36.639 1.00 44.44 O
ATOM 9 C3' G A 47 7.894 6.617 -38.620 1.00 49.11 C
ATOM 10 O3' G A 47 7.020 6.278 -39.699 1.00 51.76 O
ATOM 11 C2' G A 47 7.209 7.634 -37.709 1.00 46.00 C
ATOM 12 O2' G A 47 6.454 8.615 -38.387 1.00 46.08 O
ATOM 13 C1' G A 47 6.327 6.728 -36.854 1.00 42.40 C
ATOM 14 N9 G A 47 5.969 7.291 -35.549 1.00 39.19 N
ATOM 15 C8 G A 47 6.714 8.136 -34.762 1.00 41.82 C
ATOM 16 N7 G A 47 6.116 8.467 -33.649 1.00 40.62 N
ATOM 17 C5 G A 47 4.900 7.801 -33.704 1.00 39.92 C
ATOM 18 C6 G A 47 3.824 7.774 -32.776 1.00 41.73 C
ATOM 19 O6 G A 47 3.738 8.355 -31.684 1.00 47.86 O
ATOM 20 N1 G A 47 2.777 6.970 -33.225 1.00 38.50 N
ATOM 21 C2 G A 47 2.768 6.280 -34.412 1.00 41.21 C
ATOM 22 N2 G A 47 1.671 5.558 -34.673 1.00 38.70 N
ATOM 23 N3 G A 47 3.762 6.298 -35.282 1.00 43.51 N
ATOM 24 C4 G A 47 4.790 7.073 -34.871 1.00 40.97 C
ATOM 25 P U A 48 7.620 5.701 -41.075 1.00 55.98 P
ATOM 26 OP1 U A 48 9.075 5.510 -40.872 1.00 59.99 O
ATOM 27 OP2 U A 48 7.166 6.604 -42.159 1.00 63.72 O
ATOM 28 O5' U A 48 6.900 4.284 -41.214 1.00 55.96 O
TER
ATOM 1 O3' G B 47 7.020 6.278 -39.699 1.00 51.76 O
ATOM 2 P U B 48 7.620 5.701 -41.075 1.00 55.98 P
ATOM 3 OP1 U B 48 9.075 5.510 -40.872 1.00 59.99 O
ATOM 4 OP2 U B 48 7.166 6.604 -42.159 1.00 63.72 O
ATOM 5 O5' U B 48 6.900 4.284 -41.214 1.00 55.96 O
ATOM 6 C5' U B 48 7.382 3.302 -42.131 1.00 61.23 C
ATOM 7 C4' U B 48 6.295 2.336 -42.545 1.00 63.05 C
ATOM 8 O4' U B 48 5.591 1.877 -41.359 1.00 58.64 O
ATOM 9 C3' U B 48 5.231 2.913 -43.475 1.00 65.34 C
ATOM 10 O3' U B 48 4.764 1.902 -44.378 1.00 67.56 O
ATOM 11 C2' U B 48 4.113 3.297 -42.510 1.00 63.62 C
ATOM 12 O2' U B 48 2.828 3.354 -43.094 1.00 62.47 O
ATOM 13 C1' U B 48 4.213 2.188 -41.465 1.00 59.19 C
ATOM 14 N1 U B 48 3.729 2.576 -40.122 1.00 51.00 N
ATOM 15 C2 U B 48 2.623 1.921 -39.616 1.00 49.84 C
ATOM 16 O2 U B 48 2.032 1.052 -40.233 1.00 51.25 O
ATOM 17 N3 U B 48 2.231 2.324 -38.363 1.00 50.02 N
ATOM 18 C4 U B 48 2.823 3.292 -37.577 1.00 47.52 C
ATOM 19 O4 U B 48 2.350 3.541 -36.466 1.00 46.06 O
ATOM 20 C5 U B 48 3.965 3.920 -38.169 1.00 44.05 C
ATOM 21 C6 U B 48 4.369 3.548 -39.389 1.00 47.30 C
ATOM 22 P A B 49 5.386 0.413 -44.363 1.00 74.52 P
ATOM 23 OP1 A B 49 4.803 -0.309 -45.519 1.00 71.51 O
ATOM 24 OP2 A B 49 5.176 -0.143 -43.005 1.00 69.82 O
ATOM 25 O5' A B 49 6.940 0.663 -44.614 1.00 64.06 O
TER
ATOM 2 P G A 47 11.073 6.153 -35.277 1.00 51.07 P
ATOM 3 OP1 G A 47 12.194 6.696 -36.082 1.00 48.89 O
ATOM 4 OP2 G A 47 10.842 6.700 -33.919 1.00 41.99 O
ATOM 5 O5' G A 47 9.723 6.209 -36.120 1.00 45.61 O
ATOM 6 C5' G A 47 9.438 5.223 -37.107 1.00 45.56 C
ATOM 7 C4' G A 47 8.063 5.402 -37.706 1.00 49.40 C
ATOM 8 O4' G A 47 7.086 5.554 -36.639 1.00 44.44 O
ATOM 9 C3' G A 47 7.894 6.617 -38.620 1.00 49.11 C
ATOM 10 O3' G A 47 7.020 6.278 -39.699 1.00 51.76 O
ATOM 11 C2' G A 47 7.209 7.634 -37.709 1.00 46.00 C
ATOM 12 O2' G A 47 6.454 8.615 -38.387 1.00 46.08 O
ATOM 13 C1' G A 47 6.327 6.728 -36.854 1.00 42.40 C
ATOM 14 N9 G A 47 5.969 7.291 -35.549 1.00 39.19 N
ATOM 15 C8 G A 47 6.714 8.136 -34.762 1.00 41.82 C
ATOM 16 N7 G A 47 6.116 8.467 -33.649 1.00 40.62 N
ATOM 17 C5 G A 47 4.900 7.801 -33.704 1.00 39.92 C
ATOM 18 C6 G A 47 3.824 7.774 -32.776 1.00 41.73 C
ATOM 19 O6 G A 47 3.738 8.355 -31.684 1.00 47.86 O
ATOM 20 N1 G A 47 2.777 6.970 -33.225 1.00 38.50 N
ATOM 21 C2 G A 47 2.768 6.280 -34.412 1.00 41.21 C
ATOM 22 N2 G A 47 1.671 5.558 -34.673 1.00 38.70 N
ATOM 23 N3 G A 47 3.762 6.298 -35.282 1.00 43.51 N
ATOM 24 C4 G A 47 4.790 7.073 -34.871 1.00 40.97 C
ATOM 25 P U A 48 7.620 5.701 -41.075 1.00 55.98 P
ATOM 26 OP1 U A 48 9.075 5.510 -40.872 1.00 59.99 O
ATOM 27 OP2 U A 48 7.166 6.604 -42.159 1.00 63.72 O
ATOM 28 O5' U A 48 6.900 4.284 -41.214 1.00 55.96 O
TER
ATOM 1 O3' G B 47 7.020 6.278 -39.699 1.00 51.76 O
ATOM 2 P U B 48 7.620 5.701 -41.075 1.00 55.98 P
ATOM 3 OP1 U B 48 9.075 5.510 -40.872 1.00 59.99 O
ATOM 4 OP2 U B 48 7.166 6.604 -42.159 1.00 63.72 O
ATOM 5 O5' U B 48 6.900 4.284 -41.214 1.00 55.96 O
ATOM 6 C5' U B 48 7.382 3.302 -42.131 1.00 61.23 C
ATOM 7 C4' U B 48 6.295 2.336 -42.545 1.00 63.05 C
ATOM 8 O4' U B 48 5.591 1.877 -41.359 1.00 58.64 O
ATOM 9 C3' U B 48 5.231 2.913 -43.475 1.00 65.34 C
ATOM 10 O3' U B 48 4.764 1.902 -44.378 1.00 67.56 O
ATOM 11 C2' U B 48 4.113 3.297 -42.510 1.00 63.62 C
ATOM 12 O2' U B 48 2.828 3.354 -43.094 1.00 62.47 O
ATOM 13 C1' U B 48 4.213 2.188 -41.465 1.00 59.19 C
ATOM 14 N1 U B 48 3.729 2.576 -40.122 1.00 51.00 N
ATOM 15 C2 U B 48 2.623 1.921 -39.616 1.00 49.84 C
ATOM 16 O2 U B 48 2.032 1.052 -40.233 1.00 51.25 O
ATOM 17 N3 U B 48 2.231 2.324 -38.363 1.00 50.02 N
ATOM 18 C4 U B 48 2.823 3.292 -37.577 1.00 47.52 C
ATOM 19 O4 U B 48 2.350 3.541 -36.466 1.00 46.06 O
ATOM 20 C5 U B 48 3.965 3.920 -38.169 1.00 44.05 C
ATOM 21 C6 U B 48 4.369 3.548 -39.389 1.00 47.30 C
ATOM 22 P A B 49 5.386 0.413 -44.363 1.00 74.52 P
ATOM 23 OP1 A B 49 4.803 -0.309 -45.519 1.00 71.51 O
ATOM 24 OP2 A B 49 5.176 -0.143 -43.005 1.00 69.82 O
ATOM 25 O5' A B 49 6.940 0.663 -44.614 1.00 64.06 O
TER
Atoms:
OP1: (12.194,6.696,-36.082)
OP2: (10.842,6.700,-33.919)
C3': (7.894,6.617,-38.620)
C1': (6.327,6.728,-36.854)
C5': (9.438,5.223,-37.107)
O6: (3.738,8.355,-31.684)
O4': (7.086,5.554,-36.639)
C8: (6.714,8.136,-34.762)
C2: (2.768,6.280,-34.412)
C6: (3.824,7.774,-32.776)
C5: (4.900,7.801,-33.704)
C4: (4.790,7.073,-34.871)
P: (11.073,6.153,-35.277)
C4': (8.063,5.402,-37.706)
C2': (7.209,7.634,-37.709)
O2': (6.454,8.615,-38.387)
N1: (2.777,6.970,-33.225)
N2: (1.671,5.558,-34.673)
N3: (3.762,6.298,-35.282)
N7: (6.116,8.467,-33.649)
N9: (5.969,7.291,-35.549)
O5': (9.723,6.209,-36.120)
O3': (7.020,6.278,-39.699)
OP2: (10.842,6.700,-33.919)
C3': (7.894,6.617,-38.620)
C1': (6.327,6.728,-36.854)
C5': (9.438,5.223,-37.107)
O6: (3.738,8.355,-31.684)
O4': (7.086,5.554,-36.639)
C8: (6.714,8.136,-34.762)
C2: (2.768,6.280,-34.412)
C6: (3.824,7.774,-32.776)
C5: (4.900,7.801,-33.704)
C4: (4.790,7.073,-34.871)
P: (11.073,6.153,-35.277)
C4': (8.063,5.402,-37.706)
C2': (7.209,7.634,-37.709)
O2': (6.454,8.615,-38.387)
N1: (2.777,6.970,-33.225)
N2: (1.671,5.558,-34.673)
N3: (3.762,6.298,-35.282)
N7: (6.116,8.467,-33.649)
N9: (5.969,7.291,-35.549)
O5': (9.723,6.209,-36.120)
O3': (7.020,6.278,-39.699)
C4: (2.823,3.292,-37.577)
N3: (2.231,2.324,-38.363)
OP1: (9.075,5.510,-40.872)
OP2: (7.166,6.604,-42.159)
C2: (2.623,1.921,-39.616)
C1': (4.213,2.188,-41.465)
C3': (5.231,2.913,-43.475)
O5': (6.900,4.284,-41.214)
O4': (5.591,1.877,-41.359)
C5': (7.382,3.302,-42.131)
P: (7.620,5.701,-41.075)
C4': (6.295,2.336,-42.545)
C2': (4.113,3.297,-42.510)
O2': (2.828,3.354,-43.094)
N1: (3.729,2.576,-40.122)
O4: (2.350,3.541,-36.466)
O2: (2.032,1.052,-40.233)
C6: (4.369,3.548,-39.389)
C5: (3.965,3.920,-38.169)
O3': (4.764,1.902,-44.378)
N3: (2.231,2.324,-38.363)
OP1: (9.075,5.510,-40.872)
OP2: (7.166,6.604,-42.159)
C2: (2.623,1.921,-39.616)
C1': (4.213,2.188,-41.465)
C3': (5.231,2.913,-43.475)
O5': (6.900,4.284,-41.214)
O4': (5.591,1.877,-41.359)
C5': (7.382,3.302,-42.131)
P: (7.620,5.701,-41.075)
C4': (6.295,2.336,-42.545)
C2': (4.113,3.297,-42.510)
O2': (2.828,3.354,-43.094)
N1: (3.729,2.576,-40.122)
O4: (2.350,3.541,-36.466)
O2: (2.032,1.052,-40.233)
C6: (4.369,3.548,-39.389)
C5: (3.965,3.920,-38.169)
O3': (4.764,1.902,-44.378)
Image (generated by PyMOL):