Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A576:A577
Extra
PDB:
ATOM 1 O3' A A 575 -8.938 87.318 110.781 1.00 70.19 O
ATOM 2 P G A 576 -9.273 85.910 110.091 1.00 72.92 P
ATOM 3 OP1 G A 576 -10.742 85.745 109.934 1.00 73.77 O
ATOM 4 OP2 G A 576 -8.502 84.882 110.834 1.00 72.71 O
ATOM 5 O5' G A 576 -8.667 86.068 108.626 1.00 72.08 O
ATOM 6 C5' G A 576 -7.300 86.459 108.443 1.00 69.51 C
ATOM 7 C4' G A 576 -7.188 87.964 108.297 1.00 66.93 C
ATOM 8 O4' G A 576 -5.906 88.381 108.803 1.00 65.07 O
ATOM 9 C3' G A 576 -7.258 88.555 106.893 1.00 65.63 C
ATOM 10 O3' G A 576 -7.581 89.941 107.050 1.00 67.24 O
ATOM 11 C2' G A 576 -5.809 88.436 106.451 1.00 64.05 C
ATOM 12 O2' G A 576 -5.425 89.302 105.404 1.00 63.03 O
ATOM 13 C1' G A 576 -5.113 88.851 107.738 1.00 63.44 C
ATOM 14 N9 G A 576 -3.773 88.338 107.947 1.00 61.60 N
ATOM 15 C8 G A 576 -3.193 87.207 107.425 1.00 59.91 C
ATOM 16 N7 G A 576 -1.992 86.995 107.884 1.00 58.66 N
ATOM 17 C5 G A 576 -1.769 88.059 108.746 1.00 60.21 C
ATOM 18 C6 G A 576 -0.657 88.371 109.546 1.00 61.14 C
ATOM 19 O6 G A 576 0.395 87.739 109.673 1.00 62.02 O
ATOM 20 N1 G A 576 -0.854 89.558 110.257 1.00 61.18 N
ATOM 21 C2 G A 576 -1.981 90.339 110.206 1.00 60.00 C
ATOM 22 N2 G A 576 -1.985 91.450 110.957 1.00 60.61 N
ATOM 23 N3 G A 576 -3.025 90.051 109.471 1.00 59.45 N
ATOM 24 C4 G A 576 -2.853 88.904 108.772 1.00 60.56 C
ATOM 25 P U A 577 -8.051 90.828 105.787 1.00 68.20 P
ATOM 26 OP1 U A 577 -8.779 89.940 104.839 1.00 68.10 O
ATOM 27 OP2 U A 577 -6.932 91.666 105.290 1.00 67.09 O
ATOM 28 O5' U A 577 -9.093 91.838 106.439 1.00 66.77 O
TER
ATOM 1 O3' G B 576 -7.581 89.941 107.050 1.00 67.24 O
ATOM 2 P U B 577 -8.051 90.828 105.787 1.00 68.20 P
ATOM 3 OP1 U B 577 -8.779 89.940 104.839 1.00 68.10 O
ATOM 4 OP2 U B 577 -6.932 91.666 105.290 1.00 67.09 O
ATOM 5 O5' U B 577 -9.093 91.838 106.439 1.00 66.77 O
ATOM 6 C5' U B 577 -10.419 91.391 106.817 1.00 67.00 C
ATOM 7 C4' U B 577 -10.919 92.147 108.027 1.00 65.30 C
ATOM 8 O4' U B 577 -10.278 91.665 109.232 1.00 63.57 O
ATOM 9 C3' U B 577 -10.644 93.638 108.011 1.00 65.32 C
ATOM 10 O3' U B 577 -11.620 94.337 107.241 1.00 65.23 O
ATOM 11 C2' U B 577 -10.697 94.001 109.489 1.00 65.60 C
ATOM 12 O2' U B 577 -12.002 94.237 109.979 1.00 67.25 O
ATOM 13 C1' U B 577 -10.107 92.743 110.139 1.00 64.41 C
ATOM 14 N1 U B 577 -8.676 92.861 110.472 1.00 63.97 N
ATOM 15 C2 U B 577 -8.300 93.819 111.410 1.00 63.30 C
ATOM 16 O2 U B 577 -9.089 94.577 111.949 1.00 62.85 O
ATOM 17 N3 U B 577 -6.959 93.851 111.689 1.00 63.08 N
ATOM 18 C4 U B 577 -5.970 93.047 111.144 1.00 63.99 C
ATOM 19 O4 U B 577 -4.826 93.113 111.591 1.00 64.93 O
ATOM 20 C5 U B 577 -6.428 92.105 110.177 1.00 63.81 C
ATOM 21 C6 U B 577 -7.728 92.041 109.879 1.00 64.16 C
ATOM 22 P A B 578 -11.214 95.685 106.470 1.00 66.10 P
ATOM 23 OP1 A B 578 -12.384 96.205 105.726 1.00 65.97 O
ATOM 24 OP2 A B 578 -9.952 95.410 105.738 1.00 67.77 O
ATOM 25 O5' A B 578 -10.926 96.694 107.658 1.00 64.01 O
TER
ATOM 2 P G A 576 -9.273 85.910 110.091 1.00 72.92 P
ATOM 3 OP1 G A 576 -10.742 85.745 109.934 1.00 73.77 O
ATOM 4 OP2 G A 576 -8.502 84.882 110.834 1.00 72.71 O
ATOM 5 O5' G A 576 -8.667 86.068 108.626 1.00 72.08 O
ATOM 6 C5' G A 576 -7.300 86.459 108.443 1.00 69.51 C
ATOM 7 C4' G A 576 -7.188 87.964 108.297 1.00 66.93 C
ATOM 8 O4' G A 576 -5.906 88.381 108.803 1.00 65.07 O
ATOM 9 C3' G A 576 -7.258 88.555 106.893 1.00 65.63 C
ATOM 10 O3' G A 576 -7.581 89.941 107.050 1.00 67.24 O
ATOM 11 C2' G A 576 -5.809 88.436 106.451 1.00 64.05 C
ATOM 12 O2' G A 576 -5.425 89.302 105.404 1.00 63.03 O
ATOM 13 C1' G A 576 -5.113 88.851 107.738 1.00 63.44 C
ATOM 14 N9 G A 576 -3.773 88.338 107.947 1.00 61.60 N
ATOM 15 C8 G A 576 -3.193 87.207 107.425 1.00 59.91 C
ATOM 16 N7 G A 576 -1.992 86.995 107.884 1.00 58.66 N
ATOM 17 C5 G A 576 -1.769 88.059 108.746 1.00 60.21 C
ATOM 18 C6 G A 576 -0.657 88.371 109.546 1.00 61.14 C
ATOM 19 O6 G A 576 0.395 87.739 109.673 1.00 62.02 O
ATOM 20 N1 G A 576 -0.854 89.558 110.257 1.00 61.18 N
ATOM 21 C2 G A 576 -1.981 90.339 110.206 1.00 60.00 C
ATOM 22 N2 G A 576 -1.985 91.450 110.957 1.00 60.61 N
ATOM 23 N3 G A 576 -3.025 90.051 109.471 1.00 59.45 N
ATOM 24 C4 G A 576 -2.853 88.904 108.772 1.00 60.56 C
ATOM 25 P U A 577 -8.051 90.828 105.787 1.00 68.20 P
ATOM 26 OP1 U A 577 -8.779 89.940 104.839 1.00 68.10 O
ATOM 27 OP2 U A 577 -6.932 91.666 105.290 1.00 67.09 O
ATOM 28 O5' U A 577 -9.093 91.838 106.439 1.00 66.77 O
TER
ATOM 1 O3' G B 576 -7.581 89.941 107.050 1.00 67.24 O
ATOM 2 P U B 577 -8.051 90.828 105.787 1.00 68.20 P
ATOM 3 OP1 U B 577 -8.779 89.940 104.839 1.00 68.10 O
ATOM 4 OP2 U B 577 -6.932 91.666 105.290 1.00 67.09 O
ATOM 5 O5' U B 577 -9.093 91.838 106.439 1.00 66.77 O
ATOM 6 C5' U B 577 -10.419 91.391 106.817 1.00 67.00 C
ATOM 7 C4' U B 577 -10.919 92.147 108.027 1.00 65.30 C
ATOM 8 O4' U B 577 -10.278 91.665 109.232 1.00 63.57 O
ATOM 9 C3' U B 577 -10.644 93.638 108.011 1.00 65.32 C
ATOM 10 O3' U B 577 -11.620 94.337 107.241 1.00 65.23 O
ATOM 11 C2' U B 577 -10.697 94.001 109.489 1.00 65.60 C
ATOM 12 O2' U B 577 -12.002 94.237 109.979 1.00 67.25 O
ATOM 13 C1' U B 577 -10.107 92.743 110.139 1.00 64.41 C
ATOM 14 N1 U B 577 -8.676 92.861 110.472 1.00 63.97 N
ATOM 15 C2 U B 577 -8.300 93.819 111.410 1.00 63.30 C
ATOM 16 O2 U B 577 -9.089 94.577 111.949 1.00 62.85 O
ATOM 17 N3 U B 577 -6.959 93.851 111.689 1.00 63.08 N
ATOM 18 C4 U B 577 -5.970 93.047 111.144 1.00 63.99 C
ATOM 19 O4 U B 577 -4.826 93.113 111.591 1.00 64.93 O
ATOM 20 C5 U B 577 -6.428 92.105 110.177 1.00 63.81 C
ATOM 21 C6 U B 577 -7.728 92.041 109.879 1.00 64.16 C
ATOM 22 P A B 578 -11.214 95.685 106.470 1.00 66.10 P
ATOM 23 OP1 A B 578 -12.384 96.205 105.726 1.00 65.97 O
ATOM 24 OP2 A B 578 -9.952 95.410 105.738 1.00 67.77 O
ATOM 25 O5' A B 578 -10.926 96.694 107.658 1.00 64.01 O
TER
Atoms:
OP1: (-10.742,85.745,109.934)
OP2: (-8.502,84.882,110.834)
C3': (-7.258,88.555,106.893)
C1': (-5.113,88.851,107.738)
C5': (-7.300,86.459,108.443)
O6: (0.395,87.739,109.673)
O4': (-5.906,88.381,108.803)
C8: (-3.193,87.207,107.425)
C2: (-1.981,90.339,110.206)
C6: (-0.657,88.371,109.546)
C5: (-1.769,88.059,108.746)
C4: (-2.853,88.904,108.772)
P: (-9.273,85.910,110.091)
C4': (-7.188,87.964,108.297)
C2': (-5.809,88.436,106.451)
O2': (-5.425,89.302,105.404)
N1: (-0.854,89.558,110.257)
N2: (-1.985,91.450,110.957)
N3: (-3.025,90.051,109.471)
N7: (-1.992,86.995,107.884)
N9: (-3.773,88.338,107.947)
O5': (-8.667,86.068,108.626)
O3': (-7.581,89.941,107.050)
OP2: (-8.502,84.882,110.834)
C3': (-7.258,88.555,106.893)
C1': (-5.113,88.851,107.738)
C5': (-7.300,86.459,108.443)
O6: (0.395,87.739,109.673)
O4': (-5.906,88.381,108.803)
C8: (-3.193,87.207,107.425)
C2: (-1.981,90.339,110.206)
C6: (-0.657,88.371,109.546)
C5: (-1.769,88.059,108.746)
C4: (-2.853,88.904,108.772)
P: (-9.273,85.910,110.091)
C4': (-7.188,87.964,108.297)
C2': (-5.809,88.436,106.451)
O2': (-5.425,89.302,105.404)
N1: (-0.854,89.558,110.257)
N2: (-1.985,91.450,110.957)
N3: (-3.025,90.051,109.471)
N7: (-1.992,86.995,107.884)
N9: (-3.773,88.338,107.947)
O5': (-8.667,86.068,108.626)
O3': (-7.581,89.941,107.050)
C4: (-5.970,93.047,111.144)
N3: (-6.959,93.851,111.689)
OP1: (-8.779,89.940,104.839)
OP2: (-6.932,91.666,105.290)
C2: (-8.300,93.819,111.410)
C1': (-10.107,92.743,110.139)
C3': (-10.644,93.638,108.011)
O5': (-9.093,91.838,106.439)
O4': (-10.278,91.665,109.232)
C5': (-10.419,91.391,106.817)
P: (-8.051,90.828,105.787)
C4': (-10.919,92.147,108.027)
C2': (-10.697,94.001,109.489)
O2': (-12.002,94.237,109.979)
N1: (-8.676,92.861,110.472)
O4: (-4.826,93.113,111.591)
O2: (-9.089,94.577,111.949)
C6: (-7.728,92.041,109.879)
C5: (-6.428,92.105,110.177)
O3': (-11.620,94.337,107.241)
N3: (-6.959,93.851,111.689)
OP1: (-8.779,89.940,104.839)
OP2: (-6.932,91.666,105.290)
C2: (-8.300,93.819,111.410)
C1': (-10.107,92.743,110.139)
C3': (-10.644,93.638,108.011)
O5': (-9.093,91.838,106.439)
O4': (-10.278,91.665,109.232)
C5': (-10.419,91.391,106.817)
P: (-8.051,90.828,105.787)
C4': (-10.919,92.147,108.027)
C2': (-10.697,94.001,109.489)
O2': (-12.002,94.237,109.979)
N1: (-8.676,92.861,110.472)
O4: (-4.826,93.113,111.591)
O2: (-9.089,94.577,111.949)
C6: (-7.728,92.041,109.879)
C5: (-6.428,92.105,110.177)
O3': (-11.620,94.337,107.241)
Image (generated by PyMOL):