Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1JBT:D9:D10
Extra
PDB:
ATOM 1 O3' A A 8 -6.924 33.122 -3.405 1.00 42.81 O
ATOM 2 P G A 9 -6.959 33.313 -4.985 1.00 40.12 P
ATOM 3 OP1 G A 9 -6.536 32.041 -5.613 1.00 43.99 O
ATOM 4 OP2 G A 9 -6.169 34.550 -5.234 1.00 43.20 O
ATOM 5 O5' G A 9 -8.461 33.726 -5.352 1.00 40.93 O
ATOM 6 C5' G A 9 -9.651 33.062 -4.909 1.00 38.54 C
ATOM 7 C4' G A 9 -9.698 32.868 -3.410 1.00 35.46 C
ATOM 8 O4' G A 9 -9.886 34.142 -2.713 1.00 33.81 O
ATOM 9 C3' G A 9 -10.934 32.044 -3.038 1.00 34.04 C
ATOM 10 O3' G A 9 -10.681 31.426 -1.779 1.00 36.55 O
ATOM 11 C2' G A 9 -11.996 33.123 -2.864 1.00 33.37 C
ATOM 12 O2' G A 9 -13.126 32.733 -2.118 1.00 33.43 O
ATOM 13 C1' G A 9 -11.175 34.180 -2.140 1.00 33.35 C
ATOM 14 N9 G A 9 -11.660 35.552 -2.104 1.00 35.64 N
ATOM 15 C8 G A 9 -12.158 36.300 -3.141 1.00 36.26 C
ATOM 16 N7 G A 9 -12.502 37.508 -2.780 1.00 38.51 N
ATOM 17 C5 G A 9 -12.213 37.557 -1.423 1.00 35.88 C
ATOM 18 C6 G A 9 -12.370 38.610 -0.484 1.00 36.98 C
ATOM 19 O6 G A 9 -12.817 39.754 -0.666 1.00 43.53 O
ATOM 20 N1 G A 9 -11.945 38.228 0.781 1.00 33.92 N
ATOM 21 C2 G A 9 -11.439 36.993 1.105 1.00 35.05 C
ATOM 22 N2 G A 9 -11.078 36.813 2.383 1.00 38.66 N
ATOM 23 N3 G A 9 -11.296 36.007 0.246 1.00 35.06 N
ATOM 24 C4 G A 9 -11.696 36.356 -0.991 1.00 35.80 C
ATOM 25 P U A 10 -11.685 30.310 -1.205 1.00 38.34 P
ATOM 26 OP1 U A 10 -12.338 29.642 -2.369 1.00 38.21 O
ATOM 27 OP2 U A 10 -12.518 30.914 -0.143 1.00 33.88 O
ATOM 28 O5' U A 10 -10.714 29.256 -0.505 1.00 41.13 O
TER
ATOM 1 O3' G B 9 -10.681 31.426 -1.779 1.00 36.55 O
ATOM 2 P U B 10 -11.685 30.310 -1.205 1.00 38.34 P
ATOM 3 OP1 U B 10 -12.338 29.642 -2.369 1.00 38.21 O
ATOM 4 OP2 U B 10 -12.518 30.914 -0.143 1.00 33.88 O
ATOM 5 O5' U B 10 -10.714 29.256 -0.505 1.00 41.13 O
ATOM 6 C5' U B 10 -9.623 28.668 -1.233 1.00 37.79 C
ATOM 7 C4' U B 10 -8.418 28.479 -0.335 1.00 34.96 C
ATOM 8 O4' U B 10 -7.634 29.700 -0.277 1.00 35.11 O
ATOM 9 C3' U B 10 -8.699 28.127 1.116 1.00 34.08 C
ATOM 10 O3' U B 10 -8.852 26.720 1.214 1.00 38.98 O
ATOM 11 C2' U B 10 -7.428 28.604 1.805 1.00 33.80 C
ATOM 12 O2' U B 10 -6.333 27.732 1.616 1.00 33.92 O
ATOM 13 C1' U B 10 -7.140 29.893 1.039 1.00 35.08 C
ATOM 14 N1 U B 10 -7.712 31.134 1.603 1.00 35.75 N
ATOM 15 C2 U B 10 -7.228 31.567 2.830 1.00 35.02 C
ATOM 16 O2 U B 10 -6.370 30.966 3.448 1.00 40.85 O
ATOM 17 N3 U B 10 -7.790 32.729 3.302 1.00 34.86 N
ATOM 18 C4 U B 10 -8.766 33.493 2.688 1.00 35.16 C
ATOM 19 O4 U B 10 -9.184 34.513 3.249 1.00 36.46 O
ATOM 20 C5 U B 10 -9.215 32.986 1.425 1.00 30.71 C
ATOM 21 C6 U B 10 -8.692 31.856 0.940 1.00 29.72 C
ATOM 22 P A B 11 -9.958 26.101 2.198 1.00 39.74 P
ATOM 23 OP1 A B 11 -9.950 24.636 1.980 1.00 38.24 O
ATOM 24 OP2 A B 11 -11.229 26.865 2.046 1.00 38.23 O
ATOM 25 O5' A B 11 -9.368 26.388 3.644 1.00 36.52 O
TER
ATOM 2 P G A 9 -6.959 33.313 -4.985 1.00 40.12 P
ATOM 3 OP1 G A 9 -6.536 32.041 -5.613 1.00 43.99 O
ATOM 4 OP2 G A 9 -6.169 34.550 -5.234 1.00 43.20 O
ATOM 5 O5' G A 9 -8.461 33.726 -5.352 1.00 40.93 O
ATOM 6 C5' G A 9 -9.651 33.062 -4.909 1.00 38.54 C
ATOM 7 C4' G A 9 -9.698 32.868 -3.410 1.00 35.46 C
ATOM 8 O4' G A 9 -9.886 34.142 -2.713 1.00 33.81 O
ATOM 9 C3' G A 9 -10.934 32.044 -3.038 1.00 34.04 C
ATOM 10 O3' G A 9 -10.681 31.426 -1.779 1.00 36.55 O
ATOM 11 C2' G A 9 -11.996 33.123 -2.864 1.00 33.37 C
ATOM 12 O2' G A 9 -13.126 32.733 -2.118 1.00 33.43 O
ATOM 13 C1' G A 9 -11.175 34.180 -2.140 1.00 33.35 C
ATOM 14 N9 G A 9 -11.660 35.552 -2.104 1.00 35.64 N
ATOM 15 C8 G A 9 -12.158 36.300 -3.141 1.00 36.26 C
ATOM 16 N7 G A 9 -12.502 37.508 -2.780 1.00 38.51 N
ATOM 17 C5 G A 9 -12.213 37.557 -1.423 1.00 35.88 C
ATOM 18 C6 G A 9 -12.370 38.610 -0.484 1.00 36.98 C
ATOM 19 O6 G A 9 -12.817 39.754 -0.666 1.00 43.53 O
ATOM 20 N1 G A 9 -11.945 38.228 0.781 1.00 33.92 N
ATOM 21 C2 G A 9 -11.439 36.993 1.105 1.00 35.05 C
ATOM 22 N2 G A 9 -11.078 36.813 2.383 1.00 38.66 N
ATOM 23 N3 G A 9 -11.296 36.007 0.246 1.00 35.06 N
ATOM 24 C4 G A 9 -11.696 36.356 -0.991 1.00 35.80 C
ATOM 25 P U A 10 -11.685 30.310 -1.205 1.00 38.34 P
ATOM 26 OP1 U A 10 -12.338 29.642 -2.369 1.00 38.21 O
ATOM 27 OP2 U A 10 -12.518 30.914 -0.143 1.00 33.88 O
ATOM 28 O5' U A 10 -10.714 29.256 -0.505 1.00 41.13 O
TER
ATOM 1 O3' G B 9 -10.681 31.426 -1.779 1.00 36.55 O
ATOM 2 P U B 10 -11.685 30.310 -1.205 1.00 38.34 P
ATOM 3 OP1 U B 10 -12.338 29.642 -2.369 1.00 38.21 O
ATOM 4 OP2 U B 10 -12.518 30.914 -0.143 1.00 33.88 O
ATOM 5 O5' U B 10 -10.714 29.256 -0.505 1.00 41.13 O
ATOM 6 C5' U B 10 -9.623 28.668 -1.233 1.00 37.79 C
ATOM 7 C4' U B 10 -8.418 28.479 -0.335 1.00 34.96 C
ATOM 8 O4' U B 10 -7.634 29.700 -0.277 1.00 35.11 O
ATOM 9 C3' U B 10 -8.699 28.127 1.116 1.00 34.08 C
ATOM 10 O3' U B 10 -8.852 26.720 1.214 1.00 38.98 O
ATOM 11 C2' U B 10 -7.428 28.604 1.805 1.00 33.80 C
ATOM 12 O2' U B 10 -6.333 27.732 1.616 1.00 33.92 O
ATOM 13 C1' U B 10 -7.140 29.893 1.039 1.00 35.08 C
ATOM 14 N1 U B 10 -7.712 31.134 1.603 1.00 35.75 N
ATOM 15 C2 U B 10 -7.228 31.567 2.830 1.00 35.02 C
ATOM 16 O2 U B 10 -6.370 30.966 3.448 1.00 40.85 O
ATOM 17 N3 U B 10 -7.790 32.729 3.302 1.00 34.86 N
ATOM 18 C4 U B 10 -8.766 33.493 2.688 1.00 35.16 C
ATOM 19 O4 U B 10 -9.184 34.513 3.249 1.00 36.46 O
ATOM 20 C5 U B 10 -9.215 32.986 1.425 1.00 30.71 C
ATOM 21 C6 U B 10 -8.692 31.856 0.940 1.00 29.72 C
ATOM 22 P A B 11 -9.958 26.101 2.198 1.00 39.74 P
ATOM 23 OP1 A B 11 -9.950 24.636 1.980 1.00 38.24 O
ATOM 24 OP2 A B 11 -11.229 26.865 2.046 1.00 38.23 O
ATOM 25 O5' A B 11 -9.368 26.388 3.644 1.00 36.52 O
TER
Atoms:
OP1: (-6.536,32.041,-5.613)
OP2: (-6.169,34.550,-5.234)
C3': (-10.934,32.044,-3.038)
C1': (-11.175,34.180,-2.140)
C5': (-9.651,33.062,-4.909)
O6: (-12.817,39.754,-0.666)
O4': (-9.886,34.142,-2.713)
C8: (-12.158,36.300,-3.141)
C2: (-11.439,36.993,1.105)
C6: (-12.370,38.610,-0.484)
C5: (-12.213,37.557,-1.423)
C4: (-11.696,36.356,-0.991)
P: (-6.959,33.313,-4.985)
C4': (-9.698,32.868,-3.410)
C2': (-11.996,33.123,-2.864)
O2': (-13.126,32.733,-2.118)
N1: (-11.945,38.228,0.781)
N2: (-11.078,36.813,2.383)
N3: (-11.296,36.007,0.246)
N7: (-12.502,37.508,-2.780)
N9: (-11.660,35.552,-2.104)
O5': (-8.461,33.726,-5.352)
O3': (-10.681,31.426,-1.779)
OP2: (-6.169,34.550,-5.234)
C3': (-10.934,32.044,-3.038)
C1': (-11.175,34.180,-2.140)
C5': (-9.651,33.062,-4.909)
O6: (-12.817,39.754,-0.666)
O4': (-9.886,34.142,-2.713)
C8: (-12.158,36.300,-3.141)
C2: (-11.439,36.993,1.105)
C6: (-12.370,38.610,-0.484)
C5: (-12.213,37.557,-1.423)
C4: (-11.696,36.356,-0.991)
P: (-6.959,33.313,-4.985)
C4': (-9.698,32.868,-3.410)
C2': (-11.996,33.123,-2.864)
O2': (-13.126,32.733,-2.118)
N1: (-11.945,38.228,0.781)
N2: (-11.078,36.813,2.383)
N3: (-11.296,36.007,0.246)
N7: (-12.502,37.508,-2.780)
N9: (-11.660,35.552,-2.104)
O5': (-8.461,33.726,-5.352)
O3': (-10.681,31.426,-1.779)
C4: (-8.766,33.493,2.688)
N3: (-7.790,32.729,3.302)
OP1: (-12.338,29.642,-2.369)
OP2: (-12.518,30.914,-0.143)
C2: (-7.228,31.567,2.830)
C1': (-7.140,29.893,1.039)
C3': (-8.699,28.127,1.116)
O5': (-10.714,29.256,-0.505)
O4': (-7.634,29.700,-0.277)
C5': (-9.623,28.668,-1.233)
P: (-11.685,30.310,-1.205)
C4': (-8.418,28.479,-0.335)
C2': (-7.428,28.604,1.805)
O2': (-6.333,27.732,1.616)
N1: (-7.712,31.134,1.603)
O4: (-9.184,34.513,3.249)
O2: (-6.370,30.966,3.448)
C6: (-8.692,31.856,0.940)
C5: (-9.215,32.986,1.425)
O3': (-8.852,26.720,1.214)
N3: (-7.790,32.729,3.302)
OP1: (-12.338,29.642,-2.369)
OP2: (-12.518,30.914,-0.143)
C2: (-7.228,31.567,2.830)
C1': (-7.140,29.893,1.039)
C3': (-8.699,28.127,1.116)
O5': (-10.714,29.256,-0.505)
O4': (-7.634,29.700,-0.277)
C5': (-9.623,28.668,-1.233)
P: (-11.685,30.310,-1.205)
C4': (-8.418,28.479,-0.335)
C2': (-7.428,28.604,1.805)
O2': (-6.333,27.732,1.616)
N1: (-7.712,31.134,1.603)
O4: (-9.184,34.513,3.249)
O2: (-6.370,30.966,3.448)
C6: (-8.692,31.856,0.940)
C5: (-9.215,32.986,1.425)
O3': (-8.852,26.720,1.214)
Image (generated by PyMOL):