Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12439:12418
Extra
PDB:
ATOM 1 O3' A A2438 6.853 -66.609 21.157 1.00 56.76 O
ATOM 2 P G A2439 8.185 -67.076 21.894 1.00 64.85 P
ATOM 3 OP1 G A2439 9.303 -66.956 20.921 1.00 64.94 O
ATOM 4 OP2 G A2439 7.898 -68.419 22.511 1.00 65.21 O
ATOM 5 O5' G A2439 8.343 -65.995 23.040 1.00 64.07 O
ATOM 6 C5' G A2439 8.413 -64.624 22.739 1.00 63.66 C
ATOM 7 C4' G A2439 8.118 -63.782 23.957 1.00 63.04 C
ATOM 8 O4' G A2439 6.771 -64.050 24.441 1.00 63.21 O
ATOM 9 C3' G A2439 9.007 -64.014 25.169 1.00 62.60 C
ATOM 10 O3' G A2439 10.269 -63.361 25.059 1.00 62.21 O
ATOM 11 C2' G A2439 8.138 -63.487 26.301 1.00 62.23 C
ATOM 12 O2' G A2439 8.168 -62.064 26.322 1.00 61.73 O
ATOM 13 C1' G A2439 6.736 -63.961 25.847 1.00 62.77 C
ATOM 14 N9 G A2439 6.438 -65.314 26.374 1.00 63.14 N
ATOM 15 C8 G A2439 6.591 -66.492 25.665 1.00 63.74 C
ATOM 16 N7 G A2439 6.357 -67.569 26.355 1.00 63.98 N
ATOM 17 C5 G A2439 6.045 -67.070 27.606 1.00 63.48 C
ATOM 18 C6 G A2439 5.716 -67.768 28.772 1.00 63.47 C
ATOM 19 O6 G A2439 5.623 -68.975 28.931 1.00 63.89 O
ATOM 20 N1 G A2439 5.473 -66.936 29.828 1.00 62.91 N
ATOM 21 C2 G A2439 5.540 -65.591 29.756 1.00 62.44 C
ATOM 22 N2 G A2439 5.260 -64.996 30.906 1.00 61.97 N
ATOM 23 N3 G A2439 5.850 -64.891 28.695 1.00 62.43 N
ATOM 24 C4 G A2439 6.091 -65.698 27.652 1.00 62.97 C
ATOM 25 P U A2440 11.601 -64.043 25.645 1.00 53.47 P
ATOM 26 OP1 U A2440 12.330 -64.681 24.513 1.00 53.92 O
ATOM 27 OP2 U A2440 11.192 -64.895 26.794 1.00 53.50 O
ATOM 28 O5' U A2440 12.408 -62.779 26.155 1.00 52.77 O
TER
ATOM 1 O3' U B2417 6.771 -68.765 34.014 1.00 56.91 O
ATOM 2 P C B2418 5.236 -68.345 33.850 1.00 58.11 P
ATOM 3 OP1 C B2418 4.405 -69.444 34.405 1.00 58.53 O
ATOM 4 OP2 C B2418 5.070 -67.942 32.428 1.00 58.35 O
ATOM 5 O5' C B2418 5.110 -67.070 34.781 1.00 57.43 O
ATOM 6 C5' C B2418 5.535 -67.100 36.141 1.00 57.05 C
ATOM 7 C4' C B2418 6.241 -65.823 36.511 1.00 56.38 C
ATOM 8 O4' C B2418 7.576 -65.838 35.942 1.00 56.30 O
ATOM 9 C3' C B2418 5.599 -64.551 35.977 1.00 56.17 C
ATOM 10 O3' C B2418 4.561 -64.048 36.820 1.00 55.98 O
ATOM 11 C2' C B2418 6.773 -63.600 35.804 1.00 55.68 C
ATOM 12 O2' C B2418 7.033 -62.894 36.999 1.00 55.13 O
ATOM 13 C1' C B2418 7.944 -64.557 35.518 1.00 55.89 C
ATOM 14 N1 C B2418 8.244 -64.623 34.086 1.00 56.21 N
ATOM 15 C2 C B2418 8.837 -63.510 33.476 1.00 55.88 C
ATOM 16 O2 C B2418 9.137 -62.541 34.196 1.00 55.32 O
ATOM 17 N3 C B2418 9.080 -63.509 32.146 1.00 56.17 N
ATOM 18 C4 C B2418 8.767 -64.583 31.433 1.00 56.78 C
ATOM 19 N4 C B2418 9.030 -64.588 30.107 1.00 57.08 N
ATOM 20 C5 C B2418 8.169 -65.727 32.054 1.00 57.12 C
ATOM 21 C6 C B2418 7.913 -65.715 33.367 1.00 56.82 C
ATOM 22 P A B2419 3.204 -63.442 36.176 1.00 58.31 P
ATOM 23 OP1 A B2419 2.254 -63.183 37.290 1.00 58.14 O
ATOM 24 OP2 A B2419 2.806 -64.365 35.113 1.00 58.95 O
ATOM 25 O5' A B2419 3.673 -62.057 35.543 1.00 57.91 O
TER
ATOM 2 P G A2439 8.185 -67.076 21.894 1.00 64.85 P
ATOM 3 OP1 G A2439 9.303 -66.956 20.921 1.00 64.94 O
ATOM 4 OP2 G A2439 7.898 -68.419 22.511 1.00 65.21 O
ATOM 5 O5' G A2439 8.343 -65.995 23.040 1.00 64.07 O
ATOM 6 C5' G A2439 8.413 -64.624 22.739 1.00 63.66 C
ATOM 7 C4' G A2439 8.118 -63.782 23.957 1.00 63.04 C
ATOM 8 O4' G A2439 6.771 -64.050 24.441 1.00 63.21 O
ATOM 9 C3' G A2439 9.007 -64.014 25.169 1.00 62.60 C
ATOM 10 O3' G A2439 10.269 -63.361 25.059 1.00 62.21 O
ATOM 11 C2' G A2439 8.138 -63.487 26.301 1.00 62.23 C
ATOM 12 O2' G A2439 8.168 -62.064 26.322 1.00 61.73 O
ATOM 13 C1' G A2439 6.736 -63.961 25.847 1.00 62.77 C
ATOM 14 N9 G A2439 6.438 -65.314 26.374 1.00 63.14 N
ATOM 15 C8 G A2439 6.591 -66.492 25.665 1.00 63.74 C
ATOM 16 N7 G A2439 6.357 -67.569 26.355 1.00 63.98 N
ATOM 17 C5 G A2439 6.045 -67.070 27.606 1.00 63.48 C
ATOM 18 C6 G A2439 5.716 -67.768 28.772 1.00 63.47 C
ATOM 19 O6 G A2439 5.623 -68.975 28.931 1.00 63.89 O
ATOM 20 N1 G A2439 5.473 -66.936 29.828 1.00 62.91 N
ATOM 21 C2 G A2439 5.540 -65.591 29.756 1.00 62.44 C
ATOM 22 N2 G A2439 5.260 -64.996 30.906 1.00 61.97 N
ATOM 23 N3 G A2439 5.850 -64.891 28.695 1.00 62.43 N
ATOM 24 C4 G A2439 6.091 -65.698 27.652 1.00 62.97 C
ATOM 25 P U A2440 11.601 -64.043 25.645 1.00 53.47 P
ATOM 26 OP1 U A2440 12.330 -64.681 24.513 1.00 53.92 O
ATOM 27 OP2 U A2440 11.192 -64.895 26.794 1.00 53.50 O
ATOM 28 O5' U A2440 12.408 -62.779 26.155 1.00 52.77 O
TER
ATOM 1 O3' U B2417 6.771 -68.765 34.014 1.00 56.91 O
ATOM 2 P C B2418 5.236 -68.345 33.850 1.00 58.11 P
ATOM 3 OP1 C B2418 4.405 -69.444 34.405 1.00 58.53 O
ATOM 4 OP2 C B2418 5.070 -67.942 32.428 1.00 58.35 O
ATOM 5 O5' C B2418 5.110 -67.070 34.781 1.00 57.43 O
ATOM 6 C5' C B2418 5.535 -67.100 36.141 1.00 57.05 C
ATOM 7 C4' C B2418 6.241 -65.823 36.511 1.00 56.38 C
ATOM 8 O4' C B2418 7.576 -65.838 35.942 1.00 56.30 O
ATOM 9 C3' C B2418 5.599 -64.551 35.977 1.00 56.17 C
ATOM 10 O3' C B2418 4.561 -64.048 36.820 1.00 55.98 O
ATOM 11 C2' C B2418 6.773 -63.600 35.804 1.00 55.68 C
ATOM 12 O2' C B2418 7.033 -62.894 36.999 1.00 55.13 O
ATOM 13 C1' C B2418 7.944 -64.557 35.518 1.00 55.89 C
ATOM 14 N1 C B2418 8.244 -64.623 34.086 1.00 56.21 N
ATOM 15 C2 C B2418 8.837 -63.510 33.476 1.00 55.88 C
ATOM 16 O2 C B2418 9.137 -62.541 34.196 1.00 55.32 O
ATOM 17 N3 C B2418 9.080 -63.509 32.146 1.00 56.17 N
ATOM 18 C4 C B2418 8.767 -64.583 31.433 1.00 56.78 C
ATOM 19 N4 C B2418 9.030 -64.588 30.107 1.00 57.08 N
ATOM 20 C5 C B2418 8.169 -65.727 32.054 1.00 57.12 C
ATOM 21 C6 C B2418 7.913 -65.715 33.367 1.00 56.82 C
ATOM 22 P A B2419 3.204 -63.442 36.176 1.00 58.31 P
ATOM 23 OP1 A B2419 2.254 -63.183 37.290 1.00 58.14 O
ATOM 24 OP2 A B2419 2.806 -64.365 35.113 1.00 58.95 O
ATOM 25 O5' A B2419 3.673 -62.057 35.543 1.00 57.91 O
TER
Atoms:
OP1: (9.303,-66.956,20.921)
OP2: (7.898,-68.419,22.511)
C3': (9.007,-64.014,25.169)
C1': (6.736,-63.961,25.847)
C5': (8.413,-64.624,22.739)
O6: (5.623,-68.975,28.931)
O4': (6.771,-64.050,24.441)
C8: (6.591,-66.492,25.665)
C2: (5.540,-65.591,29.756)
C6: (5.716,-67.768,28.772)
C5: (6.045,-67.070,27.606)
C4: (6.091,-65.698,27.652)
P: (8.185,-67.076,21.894)
C4': (8.118,-63.782,23.957)
C2': (8.138,-63.487,26.301)
O2': (8.168,-62.064,26.322)
N1: (5.473,-66.936,29.828)
N2: (5.260,-64.996,30.906)
N3: (5.850,-64.891,28.695)
N7: (6.357,-67.569,26.355)
N9: (6.438,-65.314,26.374)
O5': (8.343,-65.995,23.040)
O3': (10.269,-63.361,25.059)
OP2: (7.898,-68.419,22.511)
C3': (9.007,-64.014,25.169)
C1': (6.736,-63.961,25.847)
C5': (8.413,-64.624,22.739)
O6: (5.623,-68.975,28.931)
O4': (6.771,-64.050,24.441)
C8: (6.591,-66.492,25.665)
C2: (5.540,-65.591,29.756)
C6: (5.716,-67.768,28.772)
C5: (6.045,-67.070,27.606)
C4: (6.091,-65.698,27.652)
P: (8.185,-67.076,21.894)
C4': (8.118,-63.782,23.957)
C2': (8.138,-63.487,26.301)
O2': (8.168,-62.064,26.322)
N1: (5.473,-66.936,29.828)
N2: (5.260,-64.996,30.906)
N3: (5.850,-64.891,28.695)
N7: (6.357,-67.569,26.355)
N9: (6.438,-65.314,26.374)
O5': (8.343,-65.995,23.040)
O3': (10.269,-63.361,25.059)
C2: (8.837,-63.510,33.476)
OP1: (4.405,-69.444,34.405)
OP2: (5.070,-67.942,32.428)
C4: (8.767,-64.583,31.433)
O5': (5.110,-67.070,34.781)
C3': (5.599,-64.551,35.977)
C1': (7.944,-64.557,35.518)
O4': (7.576,-65.838,35.942)
C5': (5.535,-67.100,36.141)
P: (5.236,-68.345,33.850)
O2: (9.137,-62.541,34.196)
C4': (6.241,-65.823,36.511)
C2': (6.773,-63.600,35.804)
O2': (7.033,-62.894,36.999)
N1: (8.244,-64.623,34.086)
N3: (9.080,-63.509,32.146)
N4: (9.030,-64.588,30.107)
C6: (7.913,-65.715,33.367)
C5: (8.169,-65.727,32.054)
O3': (4.561,-64.048,36.820)
OP1: (4.405,-69.444,34.405)
OP2: (5.070,-67.942,32.428)
C4: (8.767,-64.583,31.433)
O5': (5.110,-67.070,34.781)
C3': (5.599,-64.551,35.977)
C1': (7.944,-64.557,35.518)
O4': (7.576,-65.838,35.942)
C5': (5.535,-67.100,36.141)
P: (5.236,-68.345,33.850)
O2: (9.137,-62.541,34.196)
C4': (6.241,-65.823,36.511)
C2': (6.773,-63.600,35.804)
O2': (7.033,-62.894,36.999)
N1: (8.244,-64.623,34.086)
N3: (9.080,-63.509,32.146)
N4: (9.030,-64.588,30.107)
C6: (7.913,-65.715,33.367)
C5: (8.169,-65.727,32.054)
O3': (4.561,-64.048,36.820)
Image (generated by PyMOL):