Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:173:1312
Extra
PDB:
ATOM 1 O3' G A 72 68.037 -55.174 114.959 1.00 58.61 O
ATOM 2 P G A 73 68.400 -54.189 116.161 1.00 48.97 P
ATOM 3 OP1 G A 73 69.350 -53.172 115.638 1.00 48.68 O
ATOM 4 OP2 G A 73 68.820 -55.029 117.295 1.00 49.64 O
ATOM 5 O5' G A 73 66.979 -53.523 116.466 1.00 48.64 O
ATOM 6 C5' G A 73 66.656 -52.200 116.087 1.00 48.11 C
ATOM 7 C4' G A 73 65.566 -51.653 116.970 1.00 48.08 C
ATOM 8 O4' G A 73 64.592 -52.716 117.202 1.00 48.28 O
ATOM 9 C3' G A 73 66.031 -51.237 118.354 1.00 48.51 C
ATOM 10 O3' G A 73 65.110 -50.304 118.909 1.00 48.31 O
ATOM 11 C2' G A 73 65.913 -52.550 119.113 1.00 49.09 C
ATOM 12 O2' G A 73 65.903 -52.431 120.511 1.00 49.54 O
ATOM 13 C1' G A 73 64.589 -53.058 118.583 1.00 48.83 C
ATOM 14 N9 G A 73 64.423 -54.505 118.730 1.00 49.25 N
ATOM 15 C8 G A 73 65.399 -55.408 118.480 1.00 49.58 C
ATOM 16 N7 G A 73 65.030 -56.625 118.745 1.00 49.96 N
ATOM 17 C5 G A 73 63.747 -56.525 119.227 1.00 49.89 C
ATOM 18 C6 G A 73 62.869 -57.536 119.636 1.00 50.19 C
ATOM 19 O6 G A 73 63.091 -58.745 119.657 1.00 50.59 O
ATOM 20 N1 G A 73 61.650 -57.064 120.044 1.00 50.01 N
ATOM 21 C2 G A 73 61.334 -55.733 120.042 1.00 49.58 C
ATOM 22 N2 G A 73 60.088 -55.401 120.459 1.00 49.46 N
ATOM 23 N3 G A 73 62.160 -54.778 119.642 1.00 49.30 N
ATOM 24 C4 G A 73 63.355 -55.232 119.241 1.00 49.47 C
ATOM 25 P A A 74 65.260 -48.731 118.629 1.00 49.82 P
ATOM 26 OP1 A A 74 64.596 -48.476 117.387 1.00 49.24 O
ATOM 27 OP2 A A 74 66.693 -48.365 118.739 1.00 50.00 O
ATOM 28 O5' A A 74 64.451 -48.071 119.812 1.00 49.94 O
TER
ATOM 1 O3' U B 311 57.360 -58.965 119.162 1.00 50.79 O
ATOM 2 P C B 312 57.911 -58.707 120.653 1.00 48.45 P
ATOM 3 OP1 C B 312 59.398 -58.838 120.599 1.00 48.67 O
ATOM 4 OP2 C B 312 57.149 -59.554 121.589 1.00 48.93 O
ATOM 5 O5' C B 312 57.534 -57.191 120.891 1.00 48.03 O
ATOM 6 C5' C B 312 56.904 -56.775 122.084 1.00 48.25 C
ATOM 7 C4' C B 312 55.843 -55.784 121.781 1.00 47.73 C
ATOM 8 O4' C B 312 54.820 -56.420 120.998 1.00 47.52 O
ATOM 9 C3' C B 312 55.132 -55.209 122.969 1.00 47.91 C
ATOM 10 O3' C B 312 55.822 -54.085 123.486 1.00 47.87 O
ATOM 11 C2' C B 312 53.757 -54.875 122.405 1.00 47.46 C
ATOM 12 O2' C B 312 53.799 -53.667 121.695 1.00 46.89 O
ATOM 13 C1' C B 312 53.564 -55.971 121.384 1.00 47.39 C
ATOM 14 N1 C B 312 52.770 -57.136 121.886 1.00 47.81 N
ATOM 15 C2 C B 312 51.410 -56.983 122.199 1.00 47.74 C
ATOM 16 O2 C B 312 50.895 -55.866 122.148 1.00 47.35 O
ATOM 17 N3 C B 312 50.664 -58.023 122.582 1.00 48.10 N
ATOM 18 C4 C B 312 51.234 -59.206 122.631 1.00 48.52 C
ATOM 19 N4 C B 312 50.455 -60.210 123.003 1.00 48.88 N
ATOM 20 C5 C B 312 52.606 -59.413 122.309 1.00 48.61 C
ATOM 21 C6 C B 312 53.331 -58.368 121.909 1.00 48.24 C
ATOM 22 P U B 313 55.882 -53.795 125.065 1.00 56.46 P
ATOM 23 OP1 U B 313 56.650 -52.528 125.245 1.00 56.29 O
ATOM 24 OP2 U B 313 56.368 -55.042 125.737 1.00 57.11 O
ATOM 25 O5' U B 313 54.367 -53.553 125.421 1.00 56.35 O
TER
ATOM 2 P G A 73 68.400 -54.189 116.161 1.00 48.97 P
ATOM 3 OP1 G A 73 69.350 -53.172 115.638 1.00 48.68 O
ATOM 4 OP2 G A 73 68.820 -55.029 117.295 1.00 49.64 O
ATOM 5 O5' G A 73 66.979 -53.523 116.466 1.00 48.64 O
ATOM 6 C5' G A 73 66.656 -52.200 116.087 1.00 48.11 C
ATOM 7 C4' G A 73 65.566 -51.653 116.970 1.00 48.08 C
ATOM 8 O4' G A 73 64.592 -52.716 117.202 1.00 48.28 O
ATOM 9 C3' G A 73 66.031 -51.237 118.354 1.00 48.51 C
ATOM 10 O3' G A 73 65.110 -50.304 118.909 1.00 48.31 O
ATOM 11 C2' G A 73 65.913 -52.550 119.113 1.00 49.09 C
ATOM 12 O2' G A 73 65.903 -52.431 120.511 1.00 49.54 O
ATOM 13 C1' G A 73 64.589 -53.058 118.583 1.00 48.83 C
ATOM 14 N9 G A 73 64.423 -54.505 118.730 1.00 49.25 N
ATOM 15 C8 G A 73 65.399 -55.408 118.480 1.00 49.58 C
ATOM 16 N7 G A 73 65.030 -56.625 118.745 1.00 49.96 N
ATOM 17 C5 G A 73 63.747 -56.525 119.227 1.00 49.89 C
ATOM 18 C6 G A 73 62.869 -57.536 119.636 1.00 50.19 C
ATOM 19 O6 G A 73 63.091 -58.745 119.657 1.00 50.59 O
ATOM 20 N1 G A 73 61.650 -57.064 120.044 1.00 50.01 N
ATOM 21 C2 G A 73 61.334 -55.733 120.042 1.00 49.58 C
ATOM 22 N2 G A 73 60.088 -55.401 120.459 1.00 49.46 N
ATOM 23 N3 G A 73 62.160 -54.778 119.642 1.00 49.30 N
ATOM 24 C4 G A 73 63.355 -55.232 119.241 1.00 49.47 C
ATOM 25 P A A 74 65.260 -48.731 118.629 1.00 49.82 P
ATOM 26 OP1 A A 74 64.596 -48.476 117.387 1.00 49.24 O
ATOM 27 OP2 A A 74 66.693 -48.365 118.739 1.00 50.00 O
ATOM 28 O5' A A 74 64.451 -48.071 119.812 1.00 49.94 O
TER
ATOM 1 O3' U B 311 57.360 -58.965 119.162 1.00 50.79 O
ATOM 2 P C B 312 57.911 -58.707 120.653 1.00 48.45 P
ATOM 3 OP1 C B 312 59.398 -58.838 120.599 1.00 48.67 O
ATOM 4 OP2 C B 312 57.149 -59.554 121.589 1.00 48.93 O
ATOM 5 O5' C B 312 57.534 -57.191 120.891 1.00 48.03 O
ATOM 6 C5' C B 312 56.904 -56.775 122.084 1.00 48.25 C
ATOM 7 C4' C B 312 55.843 -55.784 121.781 1.00 47.73 C
ATOM 8 O4' C B 312 54.820 -56.420 120.998 1.00 47.52 O
ATOM 9 C3' C B 312 55.132 -55.209 122.969 1.00 47.91 C
ATOM 10 O3' C B 312 55.822 -54.085 123.486 1.00 47.87 O
ATOM 11 C2' C B 312 53.757 -54.875 122.405 1.00 47.46 C
ATOM 12 O2' C B 312 53.799 -53.667 121.695 1.00 46.89 O
ATOM 13 C1' C B 312 53.564 -55.971 121.384 1.00 47.39 C
ATOM 14 N1 C B 312 52.770 -57.136 121.886 1.00 47.81 N
ATOM 15 C2 C B 312 51.410 -56.983 122.199 1.00 47.74 C
ATOM 16 O2 C B 312 50.895 -55.866 122.148 1.00 47.35 O
ATOM 17 N3 C B 312 50.664 -58.023 122.582 1.00 48.10 N
ATOM 18 C4 C B 312 51.234 -59.206 122.631 1.00 48.52 C
ATOM 19 N4 C B 312 50.455 -60.210 123.003 1.00 48.88 N
ATOM 20 C5 C B 312 52.606 -59.413 122.309 1.00 48.61 C
ATOM 21 C6 C B 312 53.331 -58.368 121.909 1.00 48.24 C
ATOM 22 P U B 313 55.882 -53.795 125.065 1.00 56.46 P
ATOM 23 OP1 U B 313 56.650 -52.528 125.245 1.00 56.29 O
ATOM 24 OP2 U B 313 56.368 -55.042 125.737 1.00 57.11 O
ATOM 25 O5' U B 313 54.367 -53.553 125.421 1.00 56.35 O
TER
Atoms:
OP1: (69.350,-53.172,115.638)
OP2: (68.820,-55.029,117.295)
C3': (66.031,-51.237,118.354)
C1': (64.589,-53.058,118.583)
C5': (66.656,-52.200,116.087)
O6: (63.091,-58.745,119.657)
O4': (64.592,-52.716,117.202)
C8: (65.399,-55.408,118.480)
C2: (61.334,-55.733,120.042)
C6: (62.869,-57.536,119.636)
C5: (63.747,-56.525,119.227)
C4: (63.355,-55.232,119.241)
P: (68.400,-54.189,116.161)
C4': (65.566,-51.653,116.970)
C2': (65.913,-52.550,119.113)
O2': (65.903,-52.431,120.511)
N1: (61.650,-57.064,120.044)
N2: (60.088,-55.401,120.459)
N3: (62.160,-54.778,119.642)
N7: (65.030,-56.625,118.745)
N9: (64.423,-54.505,118.730)
O5': (66.979,-53.523,116.466)
O3': (65.110,-50.304,118.909)
OP2: (68.820,-55.029,117.295)
C3': (66.031,-51.237,118.354)
C1': (64.589,-53.058,118.583)
C5': (66.656,-52.200,116.087)
O6: (63.091,-58.745,119.657)
O4': (64.592,-52.716,117.202)
C8: (65.399,-55.408,118.480)
C2: (61.334,-55.733,120.042)
C6: (62.869,-57.536,119.636)
C5: (63.747,-56.525,119.227)
C4: (63.355,-55.232,119.241)
P: (68.400,-54.189,116.161)
C4': (65.566,-51.653,116.970)
C2': (65.913,-52.550,119.113)
O2': (65.903,-52.431,120.511)
N1: (61.650,-57.064,120.044)
N2: (60.088,-55.401,120.459)
N3: (62.160,-54.778,119.642)
N7: (65.030,-56.625,118.745)
N9: (64.423,-54.505,118.730)
O5': (66.979,-53.523,116.466)
O3': (65.110,-50.304,118.909)
C2: (51.410,-56.983,122.199)
OP1: (59.398,-58.838,120.599)
OP2: (57.149,-59.554,121.589)
C4: (51.234,-59.206,122.631)
O5': (57.534,-57.191,120.891)
C3': (55.132,-55.209,122.969)
C1': (53.564,-55.971,121.384)
O4': (54.820,-56.420,120.998)
C5': (56.904,-56.775,122.084)
P: (57.911,-58.707,120.653)
O2: (50.895,-55.866,122.148)
C4': (55.843,-55.784,121.781)
C2': (53.757,-54.875,122.405)
O2': (53.799,-53.667,121.695)
N1: (52.770,-57.136,121.886)
N3: (50.664,-58.023,122.582)
N4: (50.455,-60.210,123.003)
C6: (53.331,-58.368,121.909)
C5: (52.606,-59.413,122.309)
O3': (55.822,-54.085,123.486)
OP1: (59.398,-58.838,120.599)
OP2: (57.149,-59.554,121.589)
C4: (51.234,-59.206,122.631)
O5': (57.534,-57.191,120.891)
C3': (55.132,-55.209,122.969)
C1': (53.564,-55.971,121.384)
O4': (54.820,-56.420,120.998)
C5': (56.904,-56.775,122.084)
P: (57.911,-58.707,120.653)
O2: (50.895,-55.866,122.148)
C4': (55.843,-55.784,121.781)
C2': (53.757,-54.875,122.405)
O2': (53.799,-53.667,121.695)
N1: (52.770,-57.136,121.886)
N3: (50.664,-58.023,122.582)
N4: (50.455,-60.210,123.003)
C6: (53.331,-58.368,121.909)
C5: (52.606,-59.413,122.309)
O3': (55.822,-54.085,123.486)
Image (generated by PyMOL):