Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A23:A67
Extra
PDB:
ATOM 1 O3' A A 22 -13.111 4.204 25.279 1.00 25.77 O
ATOM 2 P G A 23 -12.010 3.173 25.835 1.00 31.03 P
ATOM 3 OP1 G A 23 -12.731 2.166 26.653 1.00 33.83 O
ATOM 4 OP2 G A 23 -10.941 3.976 26.474 1.00 22.82 O
ATOM 5 O5' G A 23 -11.454 2.492 24.506 1.00 25.90 O
ATOM 6 C5' G A 23 -12.189 1.472 23.847 1.00 24.57 C
ATOM 7 C4' G A 23 -11.521 1.046 22.562 1.00 25.58 C
ATOM 8 O4' G A 23 -11.342 2.198 21.690 1.00 28.39 O
ATOM 9 C3' G A 23 -10.117 0.478 22.689 1.00 23.92 C
ATOM 10 O3' G A 23 -10.089 -0.870 23.115 1.00 23.34 O
ATOM 11 C2' G A 23 -9.567 0.686 21.291 1.00 23.04 C
ATOM 12 O2' G A 23 -10.139 -0.247 20.387 1.00 22.89 O
ATOM 13 C1' G A 23 -10.127 2.069 20.976 1.00 23.65 C
ATOM 14 N9 G A 23 -9.208 3.127 21.428 1.00 23.18 N
ATOM 15 C8 G A 23 -9.274 3.832 22.603 1.00 22.72 C
ATOM 16 N7 G A 23 -8.299 4.686 22.739 1.00 23.21 N
ATOM 17 C5 G A 23 -7.539 4.527 21.590 1.00 24.98 C
ATOM 18 C6 G A 23 -6.354 5.184 21.176 1.00 23.69 C
ATOM 19 O6 G A 23 -5.717 6.067 21.762 1.00 24.97 O
ATOM 20 N1 G A 23 -5.917 4.713 19.944 1.00 22.23 N
ATOM 21 C2 G A 23 -6.533 3.737 19.201 1.00 22.79 C
ATOM 22 N2 G A 23 -5.950 3.427 18.033 1.00 20.70 N
ATOM 23 N3 G A 23 -7.641 3.118 19.575 1.00 22.40 N
ATOM 24 C4 G A 23 -8.083 3.560 20.772 1.00 23.83 C
ATOM 25 P U A 24 -8.882 -1.392 24.038 1.00 27.35 P
ATOM 26 OP1 U A 24 -9.041 -2.861 24.173 1.00 30.07 O
ATOM 27 OP2 U A 24 -8.881 -0.556 25.264 1.00 25.30 O
ATOM 28 O5' U A 24 -7.591 -1.062 23.164 1.00 26.85 O
TER
ATOM 1 O3' G B 66 -3.703 5.202 16.949 1.00 22.00 O
ATOM 2 P G B 67 -2.595 5.342 18.107 1.00 26.32 P
ATOM 3 OP1 G B 67 -3.298 5.197 19.403 1.00 28.16 O
ATOM 4 OP2 G B 67 -1.840 6.592 17.845 1.00 25.47 O
ATOM 5 O5' G B 67 -1.656 4.081 17.855 1.00 19.96 O
ATOM 6 C5' G B 67 -2.149 2.757 17.993 1.00 25.11 C
ATOM 7 C4' G B 67 -1.221 1.765 17.340 1.00 27.91 C
ATOM 8 O4' G B 67 0.020 1.706 18.063 1.00 30.33 O
ATOM 9 C3' G B 67 -1.703 0.322 17.276 1.00 27.39 C
ATOM 10 O3' G B 67 -2.527 0.098 16.140 1.00 28.05 O
ATOM 11 C2' G B 67 -0.403 -0.501 17.250 1.00 30.74 C
ATOM 12 O2' G B 67 -0.034 -0.817 15.916 1.00 38.65 O
ATOM 13 C1' G B 67 0.640 0.470 17.828 1.00 31.59 C
ATOM 14 N9 G B 67 1.259 -0.004 19.079 1.00 32.56 N
ATOM 15 C8 G B 67 0.738 -0.034 20.347 1.00 32.83 C
ATOM 16 N7 G B 67 1.590 -0.480 21.232 1.00 31.24 N
ATOM 17 C5 G B 67 2.744 -0.742 20.506 1.00 34.45 C
ATOM 18 C6 G B 67 4.005 -1.248 20.922 1.00 40.13 C
ATOM 19 O6 G B 67 4.369 -1.578 22.060 1.00 42.85 O
ATOM 20 N1 G B 67 4.891 -1.354 19.854 1.00 36.35 N
ATOM 21 C2 G B 67 4.602 -1.020 18.554 1.00 38.85 C
ATOM 22 N2 G B 67 5.590 -1.194 17.662 1.00 36.68 N
ATOM 23 N3 G B 67 3.431 -0.552 18.155 1.00 34.67 N
ATOM 24 C4 G B 67 2.557 -0.440 19.178 1.00 33.63 C
ATOM 25 P U B 68 -3.596 -1.099 16.110 1.00 27.20 P
ATOM 26 OP1 U B 68 -3.331 -1.960 17.292 1.00 26.47 O
ATOM 27 OP2 U B 68 -3.532 -1.705 14.757 1.00 29.20 O
ATOM 28 O5' U B 68 -4.979 -0.337 16.287 1.00 22.98 O
TER
ATOM 2 P G A 23 -12.010 3.173 25.835 1.00 31.03 P
ATOM 3 OP1 G A 23 -12.731 2.166 26.653 1.00 33.83 O
ATOM 4 OP2 G A 23 -10.941 3.976 26.474 1.00 22.82 O
ATOM 5 O5' G A 23 -11.454 2.492 24.506 1.00 25.90 O
ATOM 6 C5' G A 23 -12.189 1.472 23.847 1.00 24.57 C
ATOM 7 C4' G A 23 -11.521 1.046 22.562 1.00 25.58 C
ATOM 8 O4' G A 23 -11.342 2.198 21.690 1.00 28.39 O
ATOM 9 C3' G A 23 -10.117 0.478 22.689 1.00 23.92 C
ATOM 10 O3' G A 23 -10.089 -0.870 23.115 1.00 23.34 O
ATOM 11 C2' G A 23 -9.567 0.686 21.291 1.00 23.04 C
ATOM 12 O2' G A 23 -10.139 -0.247 20.387 1.00 22.89 O
ATOM 13 C1' G A 23 -10.127 2.069 20.976 1.00 23.65 C
ATOM 14 N9 G A 23 -9.208 3.127 21.428 1.00 23.18 N
ATOM 15 C8 G A 23 -9.274 3.832 22.603 1.00 22.72 C
ATOM 16 N7 G A 23 -8.299 4.686 22.739 1.00 23.21 N
ATOM 17 C5 G A 23 -7.539 4.527 21.590 1.00 24.98 C
ATOM 18 C6 G A 23 -6.354 5.184 21.176 1.00 23.69 C
ATOM 19 O6 G A 23 -5.717 6.067 21.762 1.00 24.97 O
ATOM 20 N1 G A 23 -5.917 4.713 19.944 1.00 22.23 N
ATOM 21 C2 G A 23 -6.533 3.737 19.201 1.00 22.79 C
ATOM 22 N2 G A 23 -5.950 3.427 18.033 1.00 20.70 N
ATOM 23 N3 G A 23 -7.641 3.118 19.575 1.00 22.40 N
ATOM 24 C4 G A 23 -8.083 3.560 20.772 1.00 23.83 C
ATOM 25 P U A 24 -8.882 -1.392 24.038 1.00 27.35 P
ATOM 26 OP1 U A 24 -9.041 -2.861 24.173 1.00 30.07 O
ATOM 27 OP2 U A 24 -8.881 -0.556 25.264 1.00 25.30 O
ATOM 28 O5' U A 24 -7.591 -1.062 23.164 1.00 26.85 O
TER
ATOM 1 O3' G B 66 -3.703 5.202 16.949 1.00 22.00 O
ATOM 2 P G B 67 -2.595 5.342 18.107 1.00 26.32 P
ATOM 3 OP1 G B 67 -3.298 5.197 19.403 1.00 28.16 O
ATOM 4 OP2 G B 67 -1.840 6.592 17.845 1.00 25.47 O
ATOM 5 O5' G B 67 -1.656 4.081 17.855 1.00 19.96 O
ATOM 6 C5' G B 67 -2.149 2.757 17.993 1.00 25.11 C
ATOM 7 C4' G B 67 -1.221 1.765 17.340 1.00 27.91 C
ATOM 8 O4' G B 67 0.020 1.706 18.063 1.00 30.33 O
ATOM 9 C3' G B 67 -1.703 0.322 17.276 1.00 27.39 C
ATOM 10 O3' G B 67 -2.527 0.098 16.140 1.00 28.05 O
ATOM 11 C2' G B 67 -0.403 -0.501 17.250 1.00 30.74 C
ATOM 12 O2' G B 67 -0.034 -0.817 15.916 1.00 38.65 O
ATOM 13 C1' G B 67 0.640 0.470 17.828 1.00 31.59 C
ATOM 14 N9 G B 67 1.259 -0.004 19.079 1.00 32.56 N
ATOM 15 C8 G B 67 0.738 -0.034 20.347 1.00 32.83 C
ATOM 16 N7 G B 67 1.590 -0.480 21.232 1.00 31.24 N
ATOM 17 C5 G B 67 2.744 -0.742 20.506 1.00 34.45 C
ATOM 18 C6 G B 67 4.005 -1.248 20.922 1.00 40.13 C
ATOM 19 O6 G B 67 4.369 -1.578 22.060 1.00 42.85 O
ATOM 20 N1 G B 67 4.891 -1.354 19.854 1.00 36.35 N
ATOM 21 C2 G B 67 4.602 -1.020 18.554 1.00 38.85 C
ATOM 22 N2 G B 67 5.590 -1.194 17.662 1.00 36.68 N
ATOM 23 N3 G B 67 3.431 -0.552 18.155 1.00 34.67 N
ATOM 24 C4 G B 67 2.557 -0.440 19.178 1.00 33.63 C
ATOM 25 P U B 68 -3.596 -1.099 16.110 1.00 27.20 P
ATOM 26 OP1 U B 68 -3.331 -1.960 17.292 1.00 26.47 O
ATOM 27 OP2 U B 68 -3.532 -1.705 14.757 1.00 29.20 O
ATOM 28 O5' U B 68 -4.979 -0.337 16.287 1.00 22.98 O
TER
Atoms:
OP1: (-12.731,2.166,26.653)
OP2: (-10.941,3.976,26.474)
C3': (-10.117,0.478,22.689)
C1': (-10.127,2.069,20.976)
C5': (-12.189,1.472,23.847)
O6: (-5.717,6.067,21.762)
O4': (-11.342,2.198,21.690)
C8: (-9.274,3.832,22.603)
C2: (-6.533,3.737,19.201)
C6: (-6.354,5.184,21.176)
C5: (-7.539,4.527,21.590)
C4: (-8.083,3.560,20.772)
P: (-12.010,3.173,25.835)
C4': (-11.521,1.046,22.562)
C2': (-9.567,0.686,21.291)
O2': (-10.139,-0.247,20.387)
N1: (-5.917,4.713,19.944)
N2: (-5.950,3.427,18.033)
N3: (-7.641,3.118,19.575)
N7: (-8.299,4.686,22.739)
N9: (-9.208,3.127,21.428)
O5': (-11.454,2.492,24.506)
O3': (-10.089,-0.870,23.115)
OP2: (-10.941,3.976,26.474)
C3': (-10.117,0.478,22.689)
C1': (-10.127,2.069,20.976)
C5': (-12.189,1.472,23.847)
O6: (-5.717,6.067,21.762)
O4': (-11.342,2.198,21.690)
C8: (-9.274,3.832,22.603)
C2: (-6.533,3.737,19.201)
C6: (-6.354,5.184,21.176)
C5: (-7.539,4.527,21.590)
C4: (-8.083,3.560,20.772)
P: (-12.010,3.173,25.835)
C4': (-11.521,1.046,22.562)
C2': (-9.567,0.686,21.291)
O2': (-10.139,-0.247,20.387)
N1: (-5.917,4.713,19.944)
N2: (-5.950,3.427,18.033)
N3: (-7.641,3.118,19.575)
N7: (-8.299,4.686,22.739)
N9: (-9.208,3.127,21.428)
O5': (-11.454,2.492,24.506)
O3': (-10.089,-0.870,23.115)
OP1: (-3.298,5.197,19.403)
OP2: (-1.840,6.592,17.845)
C3': (-1.703,0.322,17.276)
C1': (0.640,0.470,17.828)
C5': (-2.149,2.757,17.993)
O6: (4.369,-1.578,22.060)
O4': (0.020,1.706,18.063)
C8: (0.738,-0.034,20.347)
C2: (4.602,-1.020,18.554)
C6: (4.005,-1.248,20.922)
C5: (2.744,-0.742,20.506)
C4: (2.557,-0.440,19.178)
P: (-2.595,5.342,18.107)
C4': (-1.221,1.765,17.340)
C2': (-0.403,-0.501,17.250)
O2': (-0.034,-0.817,15.916)
N1: (4.891,-1.354,19.854)
N2: (5.590,-1.194,17.662)
N3: (3.431,-0.552,18.155)
N7: (1.590,-0.480,21.232)
N9: (1.259,-0.004,19.079)
O5': (-1.656,4.081,17.855)
O3': (-2.527,0.098,16.140)
OP2: (-1.840,6.592,17.845)
C3': (-1.703,0.322,17.276)
C1': (0.640,0.470,17.828)
C5': (-2.149,2.757,17.993)
O6: (4.369,-1.578,22.060)
O4': (0.020,1.706,18.063)
C8: (0.738,-0.034,20.347)
C2: (4.602,-1.020,18.554)
C6: (4.005,-1.248,20.922)
C5: (2.744,-0.742,20.506)
C4: (2.557,-0.440,19.178)
P: (-2.595,5.342,18.107)
C4': (-1.221,1.765,17.340)
C2': (-0.403,-0.501,17.250)
O2': (-0.034,-0.817,15.916)
N1: (4.891,-1.354,19.854)
N2: (5.590,-1.194,17.662)
N3: (3.431,-0.552,18.155)
N7: (1.590,-0.480,21.232)
N9: (1.259,-0.004,19.079)
O5': (-1.656,4.081,17.855)
O3': (-2.527,0.098,16.140)
Image (generated by PyMOL):