Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0554:0580
Extra
PDB:
ATOM 1 O3' A A 553 -0.707 91.334 97.909 1.00 48.09 O
ATOM 2 P A A 554 -0.819 90.845 99.437 1.00 49.58 P
ATOM 3 OP1 A A 554 -1.024 89.366 99.406 1.00 47.18 O
ATOM 4 OP2 A A 554 -1.786 91.712 100.171 1.00 47.78 O
ATOM 5 O5' A A 554 0.615 91.155 100.055 1.00 49.28 O
ATOM 6 C5' A A 554 1.810 90.528 99.547 1.00 46.76 C
ATOM 7 C4' A A 554 3.013 91.339 99.946 1.00 44.74 C
ATOM 8 O4' A A 554 2.886 92.669 99.374 1.00 45.88 O
ATOM 9 C3' A A 554 3.124 91.604 101.434 1.00 43.99 C
ATOM 10 O3' A A 554 3.720 90.520 102.121 1.00 43.06 O
ATOM 11 C2' A A 554 3.966 92.867 101.474 1.00 43.55 C
ATOM 12 O2' A A 554 5.328 92.602 101.226 1.00 43.92 O
ATOM 13 C1' A A 554 3.393 93.635 100.283 1.00 44.12 C
ATOM 14 N9 A A 554 2.302 94.533 100.655 1.00 42.36 N
ATOM 15 C8 A A 554 0.961 94.255 100.694 1.00 42.71 C
ATOM 16 N7 A A 554 0.223 95.263 101.087 1.00 43.43 N
ATOM 17 C5 A A 554 1.139 96.278 101.316 1.00 43.44 C
ATOM 18 C6 A A 554 0.990 97.611 101.750 1.00 42.97 C
ATOM 19 N6 A A 554 -0.186 98.172 102.038 1.00 42.04 N
ATOM 20 N1 A A 554 2.107 98.356 101.878 1.00 42.03 N
ATOM 21 C2 A A 554 3.287 97.795 101.588 1.00 42.50 C
ATOM 22 N3 A A 554 3.555 96.559 101.170 1.00 43.36 N
ATOM 23 C4 A A 554 2.424 95.842 101.053 1.00 43.13 C
ATOM 24 P U A 555 3.107 90.047 103.529 1.00 44.45 P
ATOM 25 OP1 U A 555 4.022 89.022 104.095 1.00 39.38 O
ATOM 26 OP2 U A 555 1.674 89.711 103.292 1.00 41.97 O
ATOM 27 O5' U A 555 3.161 91.352 104.446 1.00 39.99 O
TER
ATOM 1 O3' A B 579 -6.118 103.584 106.132 1.00 60.18 O
ATOM 2 P G B 580 -6.056 103.995 104.578 1.00 60.85 P
ATOM 3 OP1 G B 580 -5.733 105.447 104.544 1.00 59.54 O
ATOM 4 OP2 G B 580 -7.261 103.488 103.862 1.00 60.04 O
ATOM 5 O5' G B 580 -4.818 103.175 104.005 1.00 61.03 O
ATOM 6 C5' G B 580 -3.468 103.490 104.390 1.00 58.69 C
ATOM 7 C4' G B 580 -2.518 102.521 103.740 1.00 57.46 C
ATOM 8 O4' G B 580 -2.819 101.182 104.212 1.00 57.55 O
ATOM 9 C3' G B 580 -2.650 102.421 102.230 1.00 56.18 C
ATOM 10 O3' G B 580 -1.889 103.417 101.573 1.00 56.04 O
ATOM 11 C2' G B 580 -2.102 101.030 101.948 1.00 56.93 C
ATOM 12 O2' G B 580 -0.689 100.994 101.917 1.00 57.27 O
ATOM 13 C1' G B 580 -2.632 100.252 103.157 1.00 57.25 C
ATOM 14 N9 G B 580 -3.915 99.618 102.877 1.00 57.44 N
ATOM 15 C8 G B 580 -5.169 100.136 103.106 1.00 58.14 C
ATOM 16 N7 G B 580 -6.127 99.344 102.713 1.00 59.93 N
ATOM 17 C5 G B 580 -5.468 98.234 102.202 1.00 57.93 C
ATOM 18 C6 G B 580 -5.981 97.045 101.630 1.00 58.44 C
ATOM 19 O6 G B 580 -7.162 96.715 101.462 1.00 60.17 O
ATOM 20 N1 G B 580 -4.961 96.187 101.241 1.00 58.83 N
ATOM 21 C2 G B 580 -3.619 96.434 101.394 1.00 58.42 C
ATOM 22 N2 G B 580 -2.787 95.477 100.966 1.00 58.29 N
ATOM 23 N3 G B 580 -3.130 97.535 101.930 1.00 57.80 N
ATOM 24 C4 G B 580 -4.103 98.386 102.306 1.00 57.36 C
ATOM 25 P A B 581 -2.630 104.661 100.886 1.00 56.53 P
ATOM 26 OP1 A B 581 -2.766 105.706 101.934 1.00 55.25 O
ATOM 27 OP2 A B 581 -3.831 104.174 100.163 1.00 55.35 O
ATOM 28 O5' A B 581 -1.594 105.174 99.791 1.00 56.75 O
TER
ATOM 2 P A A 554 -0.819 90.845 99.437 1.00 49.58 P
ATOM 3 OP1 A A 554 -1.024 89.366 99.406 1.00 47.18 O
ATOM 4 OP2 A A 554 -1.786 91.712 100.171 1.00 47.78 O
ATOM 5 O5' A A 554 0.615 91.155 100.055 1.00 49.28 O
ATOM 6 C5' A A 554 1.810 90.528 99.547 1.00 46.76 C
ATOM 7 C4' A A 554 3.013 91.339 99.946 1.00 44.74 C
ATOM 8 O4' A A 554 2.886 92.669 99.374 1.00 45.88 O
ATOM 9 C3' A A 554 3.124 91.604 101.434 1.00 43.99 C
ATOM 10 O3' A A 554 3.720 90.520 102.121 1.00 43.06 O
ATOM 11 C2' A A 554 3.966 92.867 101.474 1.00 43.55 C
ATOM 12 O2' A A 554 5.328 92.602 101.226 1.00 43.92 O
ATOM 13 C1' A A 554 3.393 93.635 100.283 1.00 44.12 C
ATOM 14 N9 A A 554 2.302 94.533 100.655 1.00 42.36 N
ATOM 15 C8 A A 554 0.961 94.255 100.694 1.00 42.71 C
ATOM 16 N7 A A 554 0.223 95.263 101.087 1.00 43.43 N
ATOM 17 C5 A A 554 1.139 96.278 101.316 1.00 43.44 C
ATOM 18 C6 A A 554 0.990 97.611 101.750 1.00 42.97 C
ATOM 19 N6 A A 554 -0.186 98.172 102.038 1.00 42.04 N
ATOM 20 N1 A A 554 2.107 98.356 101.878 1.00 42.03 N
ATOM 21 C2 A A 554 3.287 97.795 101.588 1.00 42.50 C
ATOM 22 N3 A A 554 3.555 96.559 101.170 1.00 43.36 N
ATOM 23 C4 A A 554 2.424 95.842 101.053 1.00 43.13 C
ATOM 24 P U A 555 3.107 90.047 103.529 1.00 44.45 P
ATOM 25 OP1 U A 555 4.022 89.022 104.095 1.00 39.38 O
ATOM 26 OP2 U A 555 1.674 89.711 103.292 1.00 41.97 O
ATOM 27 O5' U A 555 3.161 91.352 104.446 1.00 39.99 O
TER
ATOM 1 O3' A B 579 -6.118 103.584 106.132 1.00 60.18 O
ATOM 2 P G B 580 -6.056 103.995 104.578 1.00 60.85 P
ATOM 3 OP1 G B 580 -5.733 105.447 104.544 1.00 59.54 O
ATOM 4 OP2 G B 580 -7.261 103.488 103.862 1.00 60.04 O
ATOM 5 O5' G B 580 -4.818 103.175 104.005 1.00 61.03 O
ATOM 6 C5' G B 580 -3.468 103.490 104.390 1.00 58.69 C
ATOM 7 C4' G B 580 -2.518 102.521 103.740 1.00 57.46 C
ATOM 8 O4' G B 580 -2.819 101.182 104.212 1.00 57.55 O
ATOM 9 C3' G B 580 -2.650 102.421 102.230 1.00 56.18 C
ATOM 10 O3' G B 580 -1.889 103.417 101.573 1.00 56.04 O
ATOM 11 C2' G B 580 -2.102 101.030 101.948 1.00 56.93 C
ATOM 12 O2' G B 580 -0.689 100.994 101.917 1.00 57.27 O
ATOM 13 C1' G B 580 -2.632 100.252 103.157 1.00 57.25 C
ATOM 14 N9 G B 580 -3.915 99.618 102.877 1.00 57.44 N
ATOM 15 C8 G B 580 -5.169 100.136 103.106 1.00 58.14 C
ATOM 16 N7 G B 580 -6.127 99.344 102.713 1.00 59.93 N
ATOM 17 C5 G B 580 -5.468 98.234 102.202 1.00 57.93 C
ATOM 18 C6 G B 580 -5.981 97.045 101.630 1.00 58.44 C
ATOM 19 O6 G B 580 -7.162 96.715 101.462 1.00 60.17 O
ATOM 20 N1 G B 580 -4.961 96.187 101.241 1.00 58.83 N
ATOM 21 C2 G B 580 -3.619 96.434 101.394 1.00 58.42 C
ATOM 22 N2 G B 580 -2.787 95.477 100.966 1.00 58.29 N
ATOM 23 N3 G B 580 -3.130 97.535 101.930 1.00 57.80 N
ATOM 24 C4 G B 580 -4.103 98.386 102.306 1.00 57.36 C
ATOM 25 P A B 581 -2.630 104.661 100.886 1.00 56.53 P
ATOM 26 OP1 A B 581 -2.766 105.706 101.934 1.00 55.25 O
ATOM 27 OP2 A B 581 -3.831 104.174 100.163 1.00 55.35 O
ATOM 28 O5' A B 581 -1.594 105.174 99.791 1.00 56.75 O
TER
Atoms:
OP1: (-1.024,89.366,99.406)
OP2: (-1.786,91.712,100.171)
C3': (3.124,91.604,101.434)
C1': (3.393,93.635,100.283)
C5': (1.810,90.528,99.547)
O4': (2.886,92.669,99.374)
C8: (0.961,94.255,100.694)
O2': (5.328,92.602,101.226)
C6: (0.990,97.611,101.750)
C5: (1.139,96.278,101.316)
C4: (2.424,95.842,101.053)
P: (-0.819,90.845,99.437)
C4': (3.013,91.339,99.946)
C2': (3.966,92.867,101.474)
C2: (3.287,97.795,101.588)
N1: (2.107,98.356,101.878)
N3: (3.555,96.559,101.170)
N6: (-0.186,98.172,102.038)
N7: (0.223,95.263,101.087)
N9: (2.302,94.533,100.655)
O5': (0.615,91.155,100.055)
O3': (3.720,90.520,102.121)
OP2: (-1.786,91.712,100.171)
C3': (3.124,91.604,101.434)
C1': (3.393,93.635,100.283)
C5': (1.810,90.528,99.547)
O4': (2.886,92.669,99.374)
C8: (0.961,94.255,100.694)
O2': (5.328,92.602,101.226)
C6: (0.990,97.611,101.750)
C5: (1.139,96.278,101.316)
C4: (2.424,95.842,101.053)
P: (-0.819,90.845,99.437)
C4': (3.013,91.339,99.946)
C2': (3.966,92.867,101.474)
C2: (3.287,97.795,101.588)
N1: (2.107,98.356,101.878)
N3: (3.555,96.559,101.170)
N6: (-0.186,98.172,102.038)
N7: (0.223,95.263,101.087)
N9: (2.302,94.533,100.655)
O5': (0.615,91.155,100.055)
O3': (3.720,90.520,102.121)
OP1: (-5.733,105.447,104.544)
OP2: (-7.261,103.488,103.862)
C3': (-2.650,102.421,102.230)
C1': (-2.632,100.252,103.157)
C5': (-3.468,103.490,104.390)
O6: (-7.162,96.715,101.462)
O4': (-2.819,101.182,104.212)
C8: (-5.169,100.136,103.106)
C2: (-3.619,96.434,101.394)
C6: (-5.981,97.045,101.630)
C5: (-5.468,98.234,102.202)
C4: (-4.103,98.386,102.306)
P: (-6.056,103.995,104.578)
C4': (-2.518,102.521,103.740)
C2': (-2.102,101.030,101.948)
O2': (-0.689,100.994,101.917)
N1: (-4.961,96.187,101.241)
N2: (-2.787,95.477,100.966)
N3: (-3.130,97.535,101.930)
N7: (-6.127,99.344,102.713)
N9: (-3.915,99.618,102.877)
O5': (-4.818,103.175,104.005)
O3': (-1.889,103.417,101.573)
OP2: (-7.261,103.488,103.862)
C3': (-2.650,102.421,102.230)
C1': (-2.632,100.252,103.157)
C5': (-3.468,103.490,104.390)
O6: (-7.162,96.715,101.462)
O4': (-2.819,101.182,104.212)
C8: (-5.169,100.136,103.106)
C2: (-3.619,96.434,101.394)
C6: (-5.981,97.045,101.630)
C5: (-5.468,98.234,102.202)
C4: (-4.103,98.386,102.306)
P: (-6.056,103.995,104.578)
C4': (-2.518,102.521,103.740)
C2': (-2.102,101.030,101.948)
O2': (-0.689,100.994,101.917)
N1: (-4.961,96.187,101.241)
N2: (-2.787,95.477,100.966)
N3: (-3.130,97.535,101.930)
N7: (-6.127,99.344,102.713)
N9: (-3.915,99.618,102.877)
O5': (-4.818,103.175,104.005)
O3': (-1.889,103.417,101.573)
Image (generated by PyMOL):