Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0578:0556
Extra
PDB:
ATOM 1 O3' U A 577 -11.805 94.231 106.831 1.00 63.77 O
ATOM 2 P A A 578 -11.430 95.574 106.042 1.00 64.77 P
ATOM 3 OP1 A A 578 -12.619 96.029 105.295 1.00 65.99 O
ATOM 4 OP2 A A 578 -10.163 95.336 105.310 1.00 67.00 O
ATOM 5 O5' A A 578 -11.155 96.616 107.209 1.00 62.21 O
ATOM 6 C5' A A 578 -12.230 97.214 107.928 1.00 61.60 C
ATOM 7 C4' A A 578 -11.689 98.231 108.889 1.00 64.26 C
ATOM 8 O4' A A 578 -10.873 97.545 109.873 1.00 64.64 O
ATOM 9 C3' A A 578 -10.723 99.235 108.286 1.00 65.72 C
ATOM 10 O3' A A 578 -11.340 100.300 107.594 1.00 69.10 O
ATOM 11 C2' A A 578 -9.931 99.699 109.497 1.00 65.24 C
ATOM 12 O2' A A 578 -10.574 100.690 110.278 1.00 62.93 O
ATOM 13 C1' A A 578 -9.790 98.383 110.262 1.00 64.02 C
ATOM 14 N9 A A 578 -8.538 97.705 109.928 1.00 62.03 N
ATOM 15 C8 A A 578 -8.351 96.570 109.183 1.00 61.52 C
ATOM 16 N7 A A 578 -7.096 96.210 109.076 1.00 61.03 N
ATOM 17 C5 A A 578 -6.412 97.173 109.799 1.00 60.87 C
ATOM 18 C6 A A 578 -5.056 97.348 110.078 1.00 61.19 C
ATOM 19 N6 A A 578 -4.103 96.521 109.651 1.00 62.49 N
ATOM 20 N1 A A 578 -4.702 98.415 110.824 1.00 61.35 N
ATOM 21 C2 A A 578 -5.661 99.242 111.254 1.00 60.86 C
ATOM 22 N3 A A 578 -6.971 99.179 111.062 1.00 59.89 N
ATOM 23 C4 A A 578 -7.285 98.106 110.320 1.00 60.83 C
ATOM 24 P A A 579 -10.740 100.758 106.179 1.00 72.44 P
ATOM 25 OP1 A A 579 -11.354 102.068 105.840 1.00 73.50 O
ATOM 26 OP2 A A 579 -10.858 99.613 105.229 1.00 71.07 O
ATOM 27 O5' A A 579 -9.199 101.022 106.483 1.00 71.24 O
TER
ATOM 1 O3' U B 555 4.267 93.203 107.744 1.00 46.98 O
ATOM 2 P G B 556 3.680 92.627 109.124 1.00 47.63 P
ATOM 3 OP1 G B 556 4.652 92.968 110.188 1.00 47.12 O
ATOM 4 OP2 G B 556 3.281 91.204 108.932 1.00 46.97 O
ATOM 5 O5' G B 556 2.371 93.502 109.352 1.00 47.53 O
ATOM 6 C5' G B 556 2.453 94.846 109.848 1.00 48.98 C
ATOM 7 C4' G B 556 1.068 95.389 110.106 1.00 51.75 C
ATOM 8 O4' G B 556 0.375 95.569 108.842 1.00 51.97 O
ATOM 9 C3' G B 556 0.133 94.489 110.901 1.00 52.37 C
ATOM 10 O3' G B 556 0.371 94.531 112.303 1.00 53.94 O
ATOM 11 C2' G B 556 -1.227 95.036 110.502 1.00 52.33 C
ATOM 12 O2' G B 556 -1.527 96.269 111.126 1.00 52.60 O
ATOM 13 C1' G B 556 -1.004 95.279 109.012 1.00 51.98 C
ATOM 14 N9 G B 556 -1.322 94.095 108.219 1.00 52.72 N
ATOM 15 C8 G B 556 -0.467 93.085 107.840 1.00 52.85 C
ATOM 16 N7 G B 556 -1.049 92.162 107.122 1.00 52.76 N
ATOM 17 C5 G B 556 -2.367 92.586 107.025 1.00 52.96 C
ATOM 18 C6 G B 556 -3.471 92.000 106.364 1.00 53.30 C
ATOM 19 O6 G B 556 -3.512 90.947 105.716 1.00 53.57 O
ATOM 20 N1 G B 556 -4.619 92.769 106.513 1.00 53.66 N
ATOM 21 C2 G B 556 -4.695 93.947 107.216 1.00 54.03 C
ATOM 22 N2 G B 556 -5.894 94.545 107.250 1.00 56.27 N
ATOM 23 N3 G B 556 -3.675 94.500 107.839 1.00 51.64 N
ATOM 24 C4 G B 556 -2.550 93.775 107.701 1.00 52.45 C
ATOM 25 P A B 557 -0.139 93.320 113.236 1.00 54.75 P
ATOM 26 OP1 A B 557 0.589 93.476 114.520 1.00 54.24 O
ATOM 27 OP2 A B 557 -0.095 92.011 112.519 1.00 52.31 O
ATOM 28 O5' A B 557 -1.673 93.676 113.458 1.00 57.30 O
TER
ATOM 2 P A A 578 -11.430 95.574 106.042 1.00 64.77 P
ATOM 3 OP1 A A 578 -12.619 96.029 105.295 1.00 65.99 O
ATOM 4 OP2 A A 578 -10.163 95.336 105.310 1.00 67.00 O
ATOM 5 O5' A A 578 -11.155 96.616 107.209 1.00 62.21 O
ATOM 6 C5' A A 578 -12.230 97.214 107.928 1.00 61.60 C
ATOM 7 C4' A A 578 -11.689 98.231 108.889 1.00 64.26 C
ATOM 8 O4' A A 578 -10.873 97.545 109.873 1.00 64.64 O
ATOM 9 C3' A A 578 -10.723 99.235 108.286 1.00 65.72 C
ATOM 10 O3' A A 578 -11.340 100.300 107.594 1.00 69.10 O
ATOM 11 C2' A A 578 -9.931 99.699 109.497 1.00 65.24 C
ATOM 12 O2' A A 578 -10.574 100.690 110.278 1.00 62.93 O
ATOM 13 C1' A A 578 -9.790 98.383 110.262 1.00 64.02 C
ATOM 14 N9 A A 578 -8.538 97.705 109.928 1.00 62.03 N
ATOM 15 C8 A A 578 -8.351 96.570 109.183 1.00 61.52 C
ATOM 16 N7 A A 578 -7.096 96.210 109.076 1.00 61.03 N
ATOM 17 C5 A A 578 -6.412 97.173 109.799 1.00 60.87 C
ATOM 18 C6 A A 578 -5.056 97.348 110.078 1.00 61.19 C
ATOM 19 N6 A A 578 -4.103 96.521 109.651 1.00 62.49 N
ATOM 20 N1 A A 578 -4.702 98.415 110.824 1.00 61.35 N
ATOM 21 C2 A A 578 -5.661 99.242 111.254 1.00 60.86 C
ATOM 22 N3 A A 578 -6.971 99.179 111.062 1.00 59.89 N
ATOM 23 C4 A A 578 -7.285 98.106 110.320 1.00 60.83 C
ATOM 24 P A A 579 -10.740 100.758 106.179 1.00 72.44 P
ATOM 25 OP1 A A 579 -11.354 102.068 105.840 1.00 73.50 O
ATOM 26 OP2 A A 579 -10.858 99.613 105.229 1.00 71.07 O
ATOM 27 O5' A A 579 -9.199 101.022 106.483 1.00 71.24 O
TER
ATOM 1 O3' U B 555 4.267 93.203 107.744 1.00 46.98 O
ATOM 2 P G B 556 3.680 92.627 109.124 1.00 47.63 P
ATOM 3 OP1 G B 556 4.652 92.968 110.188 1.00 47.12 O
ATOM 4 OP2 G B 556 3.281 91.204 108.932 1.00 46.97 O
ATOM 5 O5' G B 556 2.371 93.502 109.352 1.00 47.53 O
ATOM 6 C5' G B 556 2.453 94.846 109.848 1.00 48.98 C
ATOM 7 C4' G B 556 1.068 95.389 110.106 1.00 51.75 C
ATOM 8 O4' G B 556 0.375 95.569 108.842 1.00 51.97 O
ATOM 9 C3' G B 556 0.133 94.489 110.901 1.00 52.37 C
ATOM 10 O3' G B 556 0.371 94.531 112.303 1.00 53.94 O
ATOM 11 C2' G B 556 -1.227 95.036 110.502 1.00 52.33 C
ATOM 12 O2' G B 556 -1.527 96.269 111.126 1.00 52.60 O
ATOM 13 C1' G B 556 -1.004 95.279 109.012 1.00 51.98 C
ATOM 14 N9 G B 556 -1.322 94.095 108.219 1.00 52.72 N
ATOM 15 C8 G B 556 -0.467 93.085 107.840 1.00 52.85 C
ATOM 16 N7 G B 556 -1.049 92.162 107.122 1.00 52.76 N
ATOM 17 C5 G B 556 -2.367 92.586 107.025 1.00 52.96 C
ATOM 18 C6 G B 556 -3.471 92.000 106.364 1.00 53.30 C
ATOM 19 O6 G B 556 -3.512 90.947 105.716 1.00 53.57 O
ATOM 20 N1 G B 556 -4.619 92.769 106.513 1.00 53.66 N
ATOM 21 C2 G B 556 -4.695 93.947 107.216 1.00 54.03 C
ATOM 22 N2 G B 556 -5.894 94.545 107.250 1.00 56.27 N
ATOM 23 N3 G B 556 -3.675 94.500 107.839 1.00 51.64 N
ATOM 24 C4 G B 556 -2.550 93.775 107.701 1.00 52.45 C
ATOM 25 P A B 557 -0.139 93.320 113.236 1.00 54.75 P
ATOM 26 OP1 A B 557 0.589 93.476 114.520 1.00 54.24 O
ATOM 27 OP2 A B 557 -0.095 92.011 112.519 1.00 52.31 O
ATOM 28 O5' A B 557 -1.673 93.676 113.458 1.00 57.30 O
TER
Atoms:
OP1: (-12.619,96.029,105.295)
OP2: (-10.163,95.336,105.310)
C3': (-10.723,99.235,108.286)
C1': (-9.790,98.383,110.262)
C5': (-12.230,97.214,107.928)
O4': (-10.873,97.545,109.873)
C8: (-8.351,96.570,109.183)
O2': (-10.574,100.690,110.278)
C6: (-5.056,97.348,110.078)
C5: (-6.412,97.173,109.799)
C4: (-7.285,98.106,110.320)
P: (-11.430,95.574,106.042)
C4': (-11.689,98.231,108.889)
C2': (-9.931,99.699,109.497)
C2: (-5.661,99.242,111.254)
N1: (-4.702,98.415,110.824)
N3: (-6.971,99.179,111.062)
N6: (-4.103,96.521,109.651)
N7: (-7.096,96.210,109.076)
N9: (-8.538,97.705,109.928)
O5': (-11.155,96.616,107.209)
O3': (-11.340,100.300,107.594)
OP2: (-10.163,95.336,105.310)
C3': (-10.723,99.235,108.286)
C1': (-9.790,98.383,110.262)
C5': (-12.230,97.214,107.928)
O4': (-10.873,97.545,109.873)
C8: (-8.351,96.570,109.183)
O2': (-10.574,100.690,110.278)
C6: (-5.056,97.348,110.078)
C5: (-6.412,97.173,109.799)
C4: (-7.285,98.106,110.320)
P: (-11.430,95.574,106.042)
C4': (-11.689,98.231,108.889)
C2': (-9.931,99.699,109.497)
C2: (-5.661,99.242,111.254)
N1: (-4.702,98.415,110.824)
N3: (-6.971,99.179,111.062)
N6: (-4.103,96.521,109.651)
N7: (-7.096,96.210,109.076)
N9: (-8.538,97.705,109.928)
O5': (-11.155,96.616,107.209)
O3': (-11.340,100.300,107.594)
OP1: (4.652,92.968,110.188)
OP2: (3.281,91.204,108.932)
C3': (0.133,94.489,110.901)
C1': (-1.004,95.279,109.012)
C5': (2.453,94.846,109.848)
O6: (-3.512,90.947,105.716)
O4': (0.375,95.569,108.842)
C8: (-0.467,93.085,107.840)
C2: (-4.695,93.947,107.216)
C6: (-3.471,92.000,106.364)
C5: (-2.367,92.586,107.025)
C4: (-2.550,93.775,107.701)
P: (3.680,92.627,109.124)
C4': (1.068,95.389,110.106)
C2': (-1.227,95.036,110.502)
O2': (-1.527,96.269,111.126)
N1: (-4.619,92.769,106.513)
N2: (-5.894,94.545,107.250)
N3: (-3.675,94.500,107.839)
N7: (-1.049,92.162,107.122)
N9: (-1.322,94.095,108.219)
O5': (2.371,93.502,109.352)
O3': (0.371,94.531,112.303)
OP2: (3.281,91.204,108.932)
C3': (0.133,94.489,110.901)
C1': (-1.004,95.279,109.012)
C5': (2.453,94.846,109.848)
O6: (-3.512,90.947,105.716)
O4': (0.375,95.569,108.842)
C8: (-0.467,93.085,107.840)
C2: (-4.695,93.947,107.216)
C6: (-3.471,92.000,106.364)
C5: (-2.367,92.586,107.025)
C4: (-2.550,93.775,107.701)
P: (3.680,92.627,109.124)
C4': (1.068,95.389,110.106)
C2': (-1.227,95.036,110.502)
O2': (-1.527,96.269,111.126)
N1: (-4.619,92.769,106.513)
N2: (-5.894,94.545,107.250)
N3: (-3.675,94.500,107.839)
N7: (-1.049,92.162,107.122)
N9: (-1.322,94.095,108.219)
O5': (2.371,93.502,109.352)
O3': (0.371,94.531,112.303)
Image (generated by PyMOL):