Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12225:12008
Extra
PDB:
ATOM 1 O3' U A2224 9.746 -20.856 89.308 1.00 37.06 O
ATOM 2 P G A2225 9.535 -21.688 90.651 1.00 62.48 P
ATOM 3 OP1 G A2225 8.154 -21.451 91.069 1.00 62.70 O
ATOM 4 OP2 G A2225 10.615 -21.335 91.563 1.00 62.44 O
ATOM 5 O5' G A2225 9.701 -23.187 90.225 1.00 62.50 O
ATOM 6 C5' G A2225 9.781 -23.571 88.877 1.00 62.35 C
ATOM 7 C4' G A2225 10.759 -24.688 88.711 1.00 62.30 C
ATOM 8 O4' G A2225 10.552 -25.677 89.763 1.00 62.53 O
ATOM 9 C3' G A2225 10.658 -25.453 87.412 1.00 62.23 C
ATOM 10 O3' G A2225 11.936 -26.065 87.134 1.00 62.10 O
ATOM 11 C2' G A2225 9.680 -26.548 87.802 1.00 62.49 C
ATOM 12 O2' G A2225 9.654 -27.647 86.930 1.00 62.50 O
ATOM 13 C1' G A2225 10.249 -26.919 89.163 1.00 62.61 C
ATOM 14 N9 G A2225 9.350 -27.671 90.057 1.00 62.90 N
ATOM 15 C8 G A2225 9.722 -28.848 90.672 1.00 63.06 C
ATOM 16 N7 G A2225 8.803 -29.339 91.458 1.00 63.33 N
ATOM 17 C5 G A2225 7.757 -28.415 91.378 1.00 63.36 C
ATOM 18 C6 G A2225 6.467 -28.381 92.008 1.00 63.61 C
ATOM 19 O6 G A2225 5.984 -29.212 92.795 1.00 63.87 O
ATOM 20 N1 G A2225 5.685 -27.263 91.671 1.00 63.57 N
ATOM 21 C2 G A2225 6.070 -26.271 90.815 1.00 63.31 C
ATOM 22 N2 G A2225 5.189 -25.267 90.600 1.00 63.32 N
ATOM 23 N3 G A2225 7.266 -26.302 90.217 1.00 63.07 N
ATOM 24 C4 G A2225 8.069 -27.377 90.524 1.00 63.10 C
ATOM 25 P A A2226 13.400 -25.381 87.575 1.00 60.91 P
ATOM 26 OP1 A A2226 13.571 -25.444 89.110 1.00 61.08 O
ATOM 27 OP2 A A2226 13.489 -24.028 86.888 1.00 60.71 O
ATOM 28 O5' A A2226 14.427 -26.386 86.877 1.00 60.81 O
TER
ATOM 1 O3' U B2007 1.747 -25.233 91.299 1.00 47.94 O
ATOM 2 P G B2008 2.007 -25.662 92.818 1.00 46.62 P
ATOM 3 OP1 G B2008 3.461 -25.605 93.038 1.00 46.42 O
ATOM 4 OP2 G B2008 1.294 -26.926 93.033 1.00 46.88 O
ATOM 5 O5' G B2008 1.277 -24.497 93.624 1.00 46.76 O
ATOM 6 C5' G B2008 1.647 -24.152 94.939 1.00 46.87 C
ATOM 7 C4' G B2008 1.259 -22.725 95.282 1.00 46.89 C
ATOM 8 O4' G B2008 0.186 -22.246 94.427 1.00 46.91 O
ATOM 9 C3' G B2008 0.740 -22.531 96.678 1.00 47.18 C
ATOM 10 O3' G B2008 1.784 -22.429 97.601 1.00 47.16 O
ATOM 11 C2' G B2008 -0.090 -21.268 96.566 1.00 47.23 C
ATOM 12 O2' G B2008 0.736 -20.138 96.617 1.00 47.04 O
ATOM 13 C1' G B2008 -0.660 -21.382 95.166 1.00 47.11 C
ATOM 14 N9 G B2008 -2.021 -21.954 95.199 1.00 47.38 N
ATOM 15 C8 G B2008 -2.423 -23.176 94.699 1.00 47.46 C
ATOM 16 N7 G B2008 -3.658 -23.453 94.906 1.00 47.73 N
ATOM 17 C5 G B2008 -4.119 -22.345 95.571 1.00 47.84 C
ATOM 18 C6 G B2008 -5.419 -22.087 96.037 1.00 48.15 C
ATOM 19 O6 G B2008 -6.428 -22.804 95.913 1.00 48.37 O
ATOM 20 N1 G B2008 -5.506 -20.864 96.675 1.00 48.20 N
ATOM 21 C2 G B2008 -4.483 -19.978 96.832 1.00 47.99 C
ATOM 22 N2 G B2008 -4.838 -18.866 97.488 1.00 48.12 N
ATOM 23 N3 G B2008 -3.247 -20.207 96.403 1.00 47.70 N
ATOM 24 C4 G B2008 -3.141 -21.400 95.776 1.00 47.64 C
ATOM 25 P C B2009 1.829 -23.363 98.891 1.00 42.83 P
ATOM 26 OP1 C B2009 3.157 -23.177 99.516 1.00 42.73 O
ATOM 27 OP2 C B2009 1.456 -24.696 98.473 1.00 42.91 O
ATOM 28 O5' C B2009 0.696 -22.718 99.821 1.00 43.14 O
TER
ATOM 2 P G A2225 9.535 -21.688 90.651 1.00 62.48 P
ATOM 3 OP1 G A2225 8.154 -21.451 91.069 1.00 62.70 O
ATOM 4 OP2 G A2225 10.615 -21.335 91.563 1.00 62.44 O
ATOM 5 O5' G A2225 9.701 -23.187 90.225 1.00 62.50 O
ATOM 6 C5' G A2225 9.781 -23.571 88.877 1.00 62.35 C
ATOM 7 C4' G A2225 10.759 -24.688 88.711 1.00 62.30 C
ATOM 8 O4' G A2225 10.552 -25.677 89.763 1.00 62.53 O
ATOM 9 C3' G A2225 10.658 -25.453 87.412 1.00 62.23 C
ATOM 10 O3' G A2225 11.936 -26.065 87.134 1.00 62.10 O
ATOM 11 C2' G A2225 9.680 -26.548 87.802 1.00 62.49 C
ATOM 12 O2' G A2225 9.654 -27.647 86.930 1.00 62.50 O
ATOM 13 C1' G A2225 10.249 -26.919 89.163 1.00 62.61 C
ATOM 14 N9 G A2225 9.350 -27.671 90.057 1.00 62.90 N
ATOM 15 C8 G A2225 9.722 -28.848 90.672 1.00 63.06 C
ATOM 16 N7 G A2225 8.803 -29.339 91.458 1.00 63.33 N
ATOM 17 C5 G A2225 7.757 -28.415 91.378 1.00 63.36 C
ATOM 18 C6 G A2225 6.467 -28.381 92.008 1.00 63.61 C
ATOM 19 O6 G A2225 5.984 -29.212 92.795 1.00 63.87 O
ATOM 20 N1 G A2225 5.685 -27.263 91.671 1.00 63.57 N
ATOM 21 C2 G A2225 6.070 -26.271 90.815 1.00 63.31 C
ATOM 22 N2 G A2225 5.189 -25.267 90.600 1.00 63.32 N
ATOM 23 N3 G A2225 7.266 -26.302 90.217 1.00 63.07 N
ATOM 24 C4 G A2225 8.069 -27.377 90.524 1.00 63.10 C
ATOM 25 P A A2226 13.400 -25.381 87.575 1.00 60.91 P
ATOM 26 OP1 A A2226 13.571 -25.444 89.110 1.00 61.08 O
ATOM 27 OP2 A A2226 13.489 -24.028 86.888 1.00 60.71 O
ATOM 28 O5' A A2226 14.427 -26.386 86.877 1.00 60.81 O
TER
ATOM 1 O3' U B2007 1.747 -25.233 91.299 1.00 47.94 O
ATOM 2 P G B2008 2.007 -25.662 92.818 1.00 46.62 P
ATOM 3 OP1 G B2008 3.461 -25.605 93.038 1.00 46.42 O
ATOM 4 OP2 G B2008 1.294 -26.926 93.033 1.00 46.88 O
ATOM 5 O5' G B2008 1.277 -24.497 93.624 1.00 46.76 O
ATOM 6 C5' G B2008 1.647 -24.152 94.939 1.00 46.87 C
ATOM 7 C4' G B2008 1.259 -22.725 95.282 1.00 46.89 C
ATOM 8 O4' G B2008 0.186 -22.246 94.427 1.00 46.91 O
ATOM 9 C3' G B2008 0.740 -22.531 96.678 1.00 47.18 C
ATOM 10 O3' G B2008 1.784 -22.429 97.601 1.00 47.16 O
ATOM 11 C2' G B2008 -0.090 -21.268 96.566 1.00 47.23 C
ATOM 12 O2' G B2008 0.736 -20.138 96.617 1.00 47.04 O
ATOM 13 C1' G B2008 -0.660 -21.382 95.166 1.00 47.11 C
ATOM 14 N9 G B2008 -2.021 -21.954 95.199 1.00 47.38 N
ATOM 15 C8 G B2008 -2.423 -23.176 94.699 1.00 47.46 C
ATOM 16 N7 G B2008 -3.658 -23.453 94.906 1.00 47.73 N
ATOM 17 C5 G B2008 -4.119 -22.345 95.571 1.00 47.84 C
ATOM 18 C6 G B2008 -5.419 -22.087 96.037 1.00 48.15 C
ATOM 19 O6 G B2008 -6.428 -22.804 95.913 1.00 48.37 O
ATOM 20 N1 G B2008 -5.506 -20.864 96.675 1.00 48.20 N
ATOM 21 C2 G B2008 -4.483 -19.978 96.832 1.00 47.99 C
ATOM 22 N2 G B2008 -4.838 -18.866 97.488 1.00 48.12 N
ATOM 23 N3 G B2008 -3.247 -20.207 96.403 1.00 47.70 N
ATOM 24 C4 G B2008 -3.141 -21.400 95.776 1.00 47.64 C
ATOM 25 P C B2009 1.829 -23.363 98.891 1.00 42.83 P
ATOM 26 OP1 C B2009 3.157 -23.177 99.516 1.00 42.73 O
ATOM 27 OP2 C B2009 1.456 -24.696 98.473 1.00 42.91 O
ATOM 28 O5' C B2009 0.696 -22.718 99.821 1.00 43.14 O
TER
Atoms:
OP1: (8.154,-21.451,91.069)
OP2: (10.615,-21.335,91.563)
C3': (10.658,-25.453,87.412)
C1': (10.249,-26.919,89.163)
C5': (9.781,-23.571,88.877)
O6: (5.984,-29.212,92.795)
O4': (10.552,-25.677,89.763)
C8: (9.722,-28.848,90.672)
C2: (6.070,-26.271,90.815)
C6: (6.467,-28.381,92.008)
C5: (7.757,-28.415,91.378)
C4: (8.069,-27.377,90.524)
P: (9.535,-21.688,90.651)
C4': (10.759,-24.688,88.711)
C2': (9.680,-26.548,87.802)
O2': (9.654,-27.647,86.930)
N1: (5.685,-27.263,91.671)
N2: (5.189,-25.267,90.600)
N3: (7.266,-26.302,90.217)
N7: (8.803,-29.339,91.458)
N9: (9.350,-27.671,90.057)
O5': (9.701,-23.187,90.225)
O3': (11.936,-26.065,87.134)
OP2: (10.615,-21.335,91.563)
C3': (10.658,-25.453,87.412)
C1': (10.249,-26.919,89.163)
C5': (9.781,-23.571,88.877)
O6: (5.984,-29.212,92.795)
O4': (10.552,-25.677,89.763)
C8: (9.722,-28.848,90.672)
C2: (6.070,-26.271,90.815)
C6: (6.467,-28.381,92.008)
C5: (7.757,-28.415,91.378)
C4: (8.069,-27.377,90.524)
P: (9.535,-21.688,90.651)
C4': (10.759,-24.688,88.711)
C2': (9.680,-26.548,87.802)
O2': (9.654,-27.647,86.930)
N1: (5.685,-27.263,91.671)
N2: (5.189,-25.267,90.600)
N3: (7.266,-26.302,90.217)
N7: (8.803,-29.339,91.458)
N9: (9.350,-27.671,90.057)
O5': (9.701,-23.187,90.225)
O3': (11.936,-26.065,87.134)
OP1: (3.461,-25.605,93.038)
OP2: (1.294,-26.926,93.033)
C3': (0.740,-22.531,96.678)
C1': (-0.660,-21.382,95.166)
C5': (1.647,-24.152,94.939)
O6: (-6.428,-22.804,95.913)
O4': (0.186,-22.246,94.427)
C8: (-2.423,-23.176,94.699)
C2: (-4.483,-19.978,96.832)
C6: (-5.419,-22.087,96.037)
C5: (-4.119,-22.345,95.571)
C4: (-3.141,-21.400,95.776)
P: (2.007,-25.662,92.818)
C4': (1.259,-22.725,95.282)
C2': (-0.090,-21.268,96.566)
O2': (0.736,-20.138,96.617)
N1: (-5.506,-20.864,96.675)
N2: (-4.838,-18.866,97.488)
N3: (-3.247,-20.207,96.403)
N7: (-3.658,-23.453,94.906)
N9: (-2.021,-21.954,95.199)
O5': (1.277,-24.497,93.624)
O3': (1.784,-22.429,97.601)
OP2: (1.294,-26.926,93.033)
C3': (0.740,-22.531,96.678)
C1': (-0.660,-21.382,95.166)
C5': (1.647,-24.152,94.939)
O6: (-6.428,-22.804,95.913)
O4': (0.186,-22.246,94.427)
C8: (-2.423,-23.176,94.699)
C2: (-4.483,-19.978,96.832)
C6: (-5.419,-22.087,96.037)
C5: (-4.119,-22.345,95.571)
C4: (-3.141,-21.400,95.776)
P: (2.007,-25.662,92.818)
C4': (1.259,-22.725,95.282)
C2': (-0.090,-21.268,96.566)
O2': (0.736,-20.138,96.617)
N1: (-5.506,-20.864,96.675)
N2: (-4.838,-18.866,97.488)
N3: (-3.247,-20.207,96.403)
N7: (-3.658,-23.453,94.906)
N9: (-2.021,-21.954,95.199)
O5': (1.277,-24.497,93.624)
O3': (1.784,-22.429,97.601)
Image (generated by PyMOL):