ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1NJI:A553:A1052

Extra

PDB:
ATOM 1 O3' G A 552 -5.770 94.590 96.613 1.00 47.53 O
ATOM 2 P A A 553 -5.249 93.667 97.814 1.00 47.63 P
ATOM 3 OP1 A A 553 -5.850 92.336 97.606 1.00 45.61 O
ATOM 4 OP2 A A 553 -5.415 94.354 99.124 1.00 45.13 O
ATOM 5 O5' A A 553 -3.702 93.508 97.486 1.00 45.90 O
ATOM 6 C5' A A 553 -3.287 92.762 96.326 1.00 46.20 C
ATOM 7 C4' A A 553 -1.793 92.817 96.171 1.00 44.11 C
ATOM 8 O4' A A 553 -1.377 94.159 95.819 1.00 43.26 O
ATOM 9 C3' A A 553 -1.032 92.528 97.446 1.00 44.06 C
ATOM 10 O3' A A 553 -0.947 91.139 97.674 1.00 44.23 O
ATOM 11 C2' A A 553 0.314 93.174 97.166 1.00 43.03 C
ATOM 12 O2' A A 553 1.126 92.372 96.331 1.00 41.61 O
ATOM 13 C1' A A 553 -0.118 94.432 96.409 1.00 42.09 C
ATOM 14 N9 A A 553 -0.251 95.637 97.226 1.00 40.70 N
ATOM 15 C8 A A 553 -1.398 96.187 97.731 1.00 40.31 C
ATOM 16 N7 A A 553 -1.208 97.327 98.352 1.00 41.35 N
ATOM 17 C5 A A 553 0.160 97.532 98.265 1.00 40.89 C
ATOM 18 C6 A A 553 0.997 98.580 98.712 1.00 40.98 C
ATOM 19 N6 A A 553 0.552 99.675 99.335 1.00 40.38 N
ATOM 20 N1 A A 553 2.320 98.466 98.482 1.00 40.10 N
ATOM 21 C2 A A 553 2.763 97.379 97.836 1.00 42.07 C
ATOM 22 N3 A A 553 2.078 96.341 97.353 1.00 41.47 N
ATOM 23 C4 A A 553 0.767 96.482 97.601 1.00 41.39 C
ATOM 24 P A A 554 -0.997 90.585 99.172 1.00 45.73 P
ATOM 25 OP1 A A 554 -1.117 89.101 99.060 1.00 44.06 O
ATOM 26 OP2 A A 554 -2.008 91.359 99.926 1.00 46.06 O
ATOM 27 O5' A A 554 0.412 90.989 99.811 1.00 44.62 O
TER

ATOM 1 O3' A B1051 5.836 105.974 97.535 1.00 38.92 O
ATOM 2 P G B1052 6.371 105.880 99.027 1.00 38.58 P
ATOM 3 OP1 G B1052 5.756 107.011 99.760 1.00 39.92 O
ATOM 4 OP2 G B1052 7.841 105.747 98.983 1.00 38.12 O
ATOM 5 O5' G B1052 5.747 104.507 99.546 1.00 38.91 O
ATOM 6 C5' G B1052 4.372 104.449 99.968 1.00 37.11 C
ATOM 7 C4' G B1052 3.955 103.038 100.284 1.00 37.26 C
ATOM 8 O4' G B1052 4.269 102.175 99.171 1.00 38.96 O
ATOM 9 C3' G B1052 4.614 102.356 101.464 1.00 37.88 C
ATOM 10 O3' G B1052 3.989 102.738 102.678 1.00 39.18 O
ATOM 11 C2' G B1052 4.322 100.896 101.163 1.00 39.62 C
ATOM 12 O2' G B1052 2.954 100.600 101.407 1.00 39.85 O
ATOM 13 C1' G B1052 4.554 100.864 99.650 1.00 39.53 C
ATOM 14 N9 G B1052 5.935 100.539 99.287 1.00 38.59 N
ATOM 15 C8 G B1052 6.887 101.414 98.830 1.00 38.99 C
ATOM 16 N7 G B1052 8.036 100.845 98.588 1.00 39.33 N
ATOM 17 C5 G B1052 7.834 99.512 98.900 1.00 37.49 C
ATOM 18 C6 G B1052 8.729 98.413 98.836 1.00 37.63 C
ATOM 19 O6 G B1052 9.909 98.401 98.484 1.00 37.04 O
ATOM 20 N1 G B1052 8.120 97.236 99.246 1.00 38.60 N
ATOM 21 C2 G B1052 6.821 97.129 99.671 1.00 39.55 C
ATOM 22 N2 G B1052 6.426 95.902 100.045 1.00 39.47 N
ATOM 23 N3 G B1052 5.973 98.149 99.731 1.00 38.54 N
ATOM 24 C4 G B1052 6.544 99.301 99.334 1.00 37.28 C
ATOM 25 P G B1053 4.836 102.737 104.040 1.00 39.11 P
ATOM 26 OP1 G B1053 3.887 103.097 105.108 1.00 39.32 O
ATOM 27 OP2 G B1053 6.062 103.560 103.841 1.00 41.28 O
ATOM 28 O5' G B1053 5.269 101.213 104.217 1.00 38.23 O
TER

Atoms:
OP1: (-5.850,92.336,97.606)
OP2: (-5.415,94.354,99.124)
C3': (-1.032,92.528,97.446)
C1': (-0.118,94.432,96.409)
C5': (-3.287,92.762,96.326)
O4': (-1.377,94.159,95.819)
C8: (-1.398,96.187,97.731)
O2': (1.126,92.372,96.331)
C6: (0.997,98.580,98.712)
C5: (0.160,97.532,98.265)
C4: (0.767,96.482,97.601)
P: (-5.249,93.667,97.814)
C4': (-1.793,92.817,96.171)
C2': (0.314,93.174,97.166)
C2: (2.763,97.379,97.836)
N1: (2.320,98.466,98.482)
N3: (2.078,96.341,97.353)
N6: (0.552,99.675,99.335)
N7: (-1.208,97.327,98.352)
N9: (-0.251,95.637,97.226)
O5': (-3.702,93.508,97.486)
O3': (-0.947,91.139,97.674)
OP1: (5.756,107.011,99.760)
OP2: (7.841,105.747,98.983)
C3': (4.614,102.356,101.464)
C1': (4.554,100.864,99.650)
C5': (4.372,104.449,99.968)
O6: (9.909,98.401,98.484)
O4': (4.269,102.175,99.171)
C8: (6.887,101.414,98.830)
C2: (6.821,97.129,99.671)
C6: (8.729,98.413,98.836)
C5: (7.834,99.512,98.900)
C4: (6.544,99.301,99.334)
P: (6.371,105.880,99.027)
C4': (3.955,103.038,100.284)
C2': (4.322,100.896,101.163)
O2': (2.954,100.600,101.407)
N1: (8.120,97.236,99.246)
N2: (6.426,95.902,100.045)
N3: (5.973,98.149,99.731)
N7: (8.036,100.845,98.588)
N9: (5.935,100.539,99.287)
O5': (5.747,104.507,99.546)
O3': (3.989,102.738,102.678)
Image (generated by PyMOL):
PyMOL image
show in jmol