Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2RD2:B52:B55
Extra
PDB:
ATOM 1 O3' U A 51 6.667 49.191 38.273 1.00151.60 O
ATOM 2 P U A 52 5.243 48.573 38.698 1.00168.96 P
ATOM 3 OP1 U A 52 4.270 49.687 38.845 1.00149.14 O
ATOM 4 OP2 U A 52 5.486 47.653 39.842 1.00145.21 O
ATOM 5 O5' U A 52 4.817 47.693 37.440 1.00165.13 O
ATOM 6 C5' U A 52 4.918 48.211 36.115 1.00162.03 C
ATOM 7 C4' U A 52 4.877 47.082 35.113 1.00162.94 C
ATOM 8 O4' U A 52 6.057 46.250 35.269 1.00162.64 O
ATOM 9 C3' U A 52 3.712 46.120 35.282 1.00163.93 C
ATOM 10 O3' U A 52 2.557 46.610 34.607 1.00165.51 O
ATOM 11 C2' U A 52 4.238 44.848 34.627 1.00163.32 C
ATOM 12 O2' U A 52 4.090 44.852 33.222 1.00164.98 O
ATOM 13 C1' U A 52 5.725 44.900 34.990 1.00161.50 C
ATOM 14 N1 U A 52 6.074 44.081 36.160 1.00134.00 N
ATOM 15 C2 U A 52 6.117 42.708 35.990 1.00133.41 C
ATOM 16 O2 U A 52 5.876 42.165 34.924 1.00131.15 O
ATOM 17 N3 U A 52 6.453 41.994 37.115 1.00133.55 N
ATOM 18 C4 U A 52 6.743 42.503 38.366 1.00131.52 C
ATOM 19 O4 U A 52 7.036 41.730 39.282 1.00130.18 O
ATOM 20 C5 U A 52 6.674 43.932 38.460 1.00130.55 C
ATOM 21 C6 U A 52 6.350 44.654 37.380 1.00131.35 C
ATOM 22 P C A 53 1.123 46.544 35.327 1.00110.50 P
ATOM 23 OP1 C A 53 0.079 46.748 34.290 1.00128.73 O
ATOM 24 OP2 C A 53 1.174 47.442 36.512 1.00130.85 O
ATOM 25 O5' C A 53 1.024 45.043 35.845 1.00104.00 O
TER
ATOM 1 O3' G B 54 5.271 37.376 36.249 1.00123.18 O
ATOM 2 P A B 55 6.832 37.673 36.479 1.00136.39 P
ATOM 3 OP1 A B 55 7.396 36.570 37.298 1.00103.05 O
ATOM 4 OP2 A B 55 6.962 39.078 36.947 1.00 95.85 O
ATOM 5 O5' A B 55 7.454 37.586 35.014 1.00134.71 O
ATOM 6 C5' A B 55 7.306 36.410 34.215 1.00128.96 C
ATOM 7 C4' A B 55 8.634 36.041 33.604 1.00122.37 C
ATOM 8 O4' A B 55 9.100 37.162 32.821 1.00122.67 O
ATOM 9 C3' A B 55 9.714 35.761 34.638 1.00116.73 C
ATOM 10 O3' A B 55 9.780 34.352 34.827 1.00111.76 O
ATOM 11 C2' A B 55 10.990 36.288 33.997 1.00118.09 C
ATOM 12 O2' A B 55 11.662 35.300 33.243 1.00122.47 O
ATOM 13 C1' A B 55 10.463 37.406 33.091 1.00119.36 C
ATOM 14 N9 A B 55 10.565 38.763 33.619 1.00 80.00 N
ATOM 15 C8 A B 55 10.454 39.201 34.912 1.00 75.32 C
ATOM 16 N7 A B 55 10.564 40.503 35.037 1.00 75.96 N
ATOM 17 C5 A B 55 10.770 40.949 33.738 1.00 75.38 C
ATOM 18 C6 A B 55 10.962 42.235 33.190 1.00 75.06 C
ATOM 19 N6 A B 55 10.978 43.357 33.916 1.00 79.44 N
ATOM 20 N1 A B 55 11.139 42.329 31.851 1.00 72.98 N
ATOM 21 C2 A B 55 11.123 41.206 31.123 1.00 69.51 C
ATOM 22 N3 A B 55 10.952 39.946 31.522 1.00 69.33 N
ATOM 23 C4 A B 55 10.780 39.887 32.856 1.00 75.89 C
ATOM 24 P A B 56 10.867 33.729 35.826 1.00 90.75 P
ATOM 25 OP1 A B 56 10.396 32.369 36.209 1.00102.33 O
ATOM 26 OP2 A B 56 11.127 34.747 36.885 1.00 94.95 O
ATOM 27 O5' A B 56 12.179 33.570 34.928 1.00 88.35 O
TER
ATOM 2 P U A 52 5.243 48.573 38.698 1.00168.96 P
ATOM 3 OP1 U A 52 4.270 49.687 38.845 1.00149.14 O
ATOM 4 OP2 U A 52 5.486 47.653 39.842 1.00145.21 O
ATOM 5 O5' U A 52 4.817 47.693 37.440 1.00165.13 O
ATOM 6 C5' U A 52 4.918 48.211 36.115 1.00162.03 C
ATOM 7 C4' U A 52 4.877 47.082 35.113 1.00162.94 C
ATOM 8 O4' U A 52 6.057 46.250 35.269 1.00162.64 O
ATOM 9 C3' U A 52 3.712 46.120 35.282 1.00163.93 C
ATOM 10 O3' U A 52 2.557 46.610 34.607 1.00165.51 O
ATOM 11 C2' U A 52 4.238 44.848 34.627 1.00163.32 C
ATOM 12 O2' U A 52 4.090 44.852 33.222 1.00164.98 O
ATOM 13 C1' U A 52 5.725 44.900 34.990 1.00161.50 C
ATOM 14 N1 U A 52 6.074 44.081 36.160 1.00134.00 N
ATOM 15 C2 U A 52 6.117 42.708 35.990 1.00133.41 C
ATOM 16 O2 U A 52 5.876 42.165 34.924 1.00131.15 O
ATOM 17 N3 U A 52 6.453 41.994 37.115 1.00133.55 N
ATOM 18 C4 U A 52 6.743 42.503 38.366 1.00131.52 C
ATOM 19 O4 U A 52 7.036 41.730 39.282 1.00130.18 O
ATOM 20 C5 U A 52 6.674 43.932 38.460 1.00130.55 C
ATOM 21 C6 U A 52 6.350 44.654 37.380 1.00131.35 C
ATOM 22 P C A 53 1.123 46.544 35.327 1.00110.50 P
ATOM 23 OP1 C A 53 0.079 46.748 34.290 1.00128.73 O
ATOM 24 OP2 C A 53 1.174 47.442 36.512 1.00130.85 O
ATOM 25 O5' C A 53 1.024 45.043 35.845 1.00104.00 O
TER
ATOM 1 O3' G B 54 5.271 37.376 36.249 1.00123.18 O
ATOM 2 P A B 55 6.832 37.673 36.479 1.00136.39 P
ATOM 3 OP1 A B 55 7.396 36.570 37.298 1.00103.05 O
ATOM 4 OP2 A B 55 6.962 39.078 36.947 1.00 95.85 O
ATOM 5 O5' A B 55 7.454 37.586 35.014 1.00134.71 O
ATOM 6 C5' A B 55 7.306 36.410 34.215 1.00128.96 C
ATOM 7 C4' A B 55 8.634 36.041 33.604 1.00122.37 C
ATOM 8 O4' A B 55 9.100 37.162 32.821 1.00122.67 O
ATOM 9 C3' A B 55 9.714 35.761 34.638 1.00116.73 C
ATOM 10 O3' A B 55 9.780 34.352 34.827 1.00111.76 O
ATOM 11 C2' A B 55 10.990 36.288 33.997 1.00118.09 C
ATOM 12 O2' A B 55 11.662 35.300 33.243 1.00122.47 O
ATOM 13 C1' A B 55 10.463 37.406 33.091 1.00119.36 C
ATOM 14 N9 A B 55 10.565 38.763 33.619 1.00 80.00 N
ATOM 15 C8 A B 55 10.454 39.201 34.912 1.00 75.32 C
ATOM 16 N7 A B 55 10.564 40.503 35.037 1.00 75.96 N
ATOM 17 C5 A B 55 10.770 40.949 33.738 1.00 75.38 C
ATOM 18 C6 A B 55 10.962 42.235 33.190 1.00 75.06 C
ATOM 19 N6 A B 55 10.978 43.357 33.916 1.00 79.44 N
ATOM 20 N1 A B 55 11.139 42.329 31.851 1.00 72.98 N
ATOM 21 C2 A B 55 11.123 41.206 31.123 1.00 69.51 C
ATOM 22 N3 A B 55 10.952 39.946 31.522 1.00 69.33 N
ATOM 23 C4 A B 55 10.780 39.887 32.856 1.00 75.89 C
ATOM 24 P A B 56 10.867 33.729 35.826 1.00 90.75 P
ATOM 25 OP1 A B 56 10.396 32.369 36.209 1.00102.33 O
ATOM 26 OP2 A B 56 11.127 34.747 36.885 1.00 94.95 O
ATOM 27 O5' A B 56 12.179 33.570 34.928 1.00 88.35 O
TER
Atoms:
C4: (6.743,42.503,38.366)
N3: (6.453,41.994,37.115)
OP1: (4.270,49.687,38.845)
OP2: (5.486,47.653,39.842)
C2: (6.117,42.708,35.990)
C1': (5.725,44.900,34.990)
C3': (3.712,46.120,35.282)
O5': (4.817,47.693,37.440)
O4': (6.057,46.250,35.269)
C5': (4.918,48.211,36.115)
P: (5.243,48.573,38.698)
C4': (4.877,47.082,35.113)
C2': (4.238,44.848,34.627)
O2': (4.090,44.852,33.222)
N1: (6.074,44.081,36.160)
O4: (7.036,41.730,39.282)
O2: (5.876,42.165,34.924)
C6: (6.350,44.654,37.380)
C5: (6.674,43.932,38.460)
O3': (2.557,46.610,34.607)
N3: (6.453,41.994,37.115)
OP1: (4.270,49.687,38.845)
OP2: (5.486,47.653,39.842)
C2: (6.117,42.708,35.990)
C1': (5.725,44.900,34.990)
C3': (3.712,46.120,35.282)
O5': (4.817,47.693,37.440)
O4': (6.057,46.250,35.269)
C5': (4.918,48.211,36.115)
P: (5.243,48.573,38.698)
C4': (4.877,47.082,35.113)
C2': (4.238,44.848,34.627)
O2': (4.090,44.852,33.222)
N1: (6.074,44.081,36.160)
O4: (7.036,41.730,39.282)
O2: (5.876,42.165,34.924)
C6: (6.350,44.654,37.380)
C5: (6.674,43.932,38.460)
O3': (2.557,46.610,34.607)
OP1: (7.396,36.570,37.298)
OP2: (6.962,39.078,36.947)
C3': (9.714,35.761,34.638)
C1': (10.463,37.406,33.091)
C5': (7.306,36.410,34.215)
O4': (9.100,37.162,32.821)
C8: (10.454,39.201,34.912)
O2': (11.662,35.300,33.243)
C6: (10.962,42.235,33.190)
C5: (10.770,40.949,33.738)
C4: (10.780,39.887,32.856)
P: (6.832,37.673,36.479)
C4': (8.634,36.041,33.604)
C2': (10.990,36.288,33.997)
C2: (11.123,41.206,31.123)
N1: (11.139,42.329,31.851)
N3: (10.952,39.946,31.522)
N6: (10.978,43.357,33.916)
N7: (10.564,40.503,35.037)
N9: (10.565,38.763,33.619)
O5': (7.454,37.586,35.014)
O3': (9.780,34.352,34.827)
OP2: (6.962,39.078,36.947)
C3': (9.714,35.761,34.638)
C1': (10.463,37.406,33.091)
C5': (7.306,36.410,34.215)
O4': (9.100,37.162,32.821)
C8: (10.454,39.201,34.912)
O2': (11.662,35.300,33.243)
C6: (10.962,42.235,33.190)
C5: (10.770,40.949,33.738)
C4: (10.780,39.887,32.856)
P: (6.832,37.673,36.479)
C4': (8.634,36.041,33.604)
C2': (10.990,36.288,33.997)
C2: (11.123,41.206,31.123)
N1: (11.139,42.329,31.851)
N3: (10.952,39.946,31.522)
N6: (10.978,43.357,33.916)
N7: (10.564,40.503,35.037)
N9: (10.565,38.763,33.619)
O5': (7.454,37.586,35.014)
O3': (9.780,34.352,34.827)
Image (generated by PyMOL):