ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJ9:0988:01233

Extra

PDB:
ATOM 1 O3' U A 987 19.513 72.739 71.755 1.00 67.96 O
ATOM 2 P U A 988 17.965 73.083 71.500 1.00 69.63 P
ATOM 3 OP1 U A 988 17.300 73.477 72.772 1.00 67.34 O
ATOM 4 OP2 U A 988 17.435 71.946 70.712 1.00 71.89 O
ATOM 5 O5' U A 988 18.007 74.364 70.557 1.00 69.67 O
ATOM 6 C5' U A 988 18.341 75.643 71.103 1.00 71.10 C
ATOM 7 C4' U A 988 17.888 76.754 70.187 1.00 71.29 C
ATOM 8 O4' U A 988 16.578 76.452 69.630 1.00 71.83 O
ATOM 9 C3' U A 988 17.736 78.077 70.924 1.00 71.64 C
ATOM 10 O3' U A 988 17.983 79.165 70.046 1.00 70.13 O
ATOM 11 C2' U A 988 16.262 78.050 71.307 1.00 73.11 C
ATOM 12 O2' U A 988 15.730 79.321 71.610 1.00 73.57 O
ATOM 13 C1' U A 988 15.650 77.439 70.046 1.00 73.70 C
ATOM 14 N1 U A 988 14.329 76.812 70.236 1.00 75.48 N
ATOM 15 C2 U A 988 13.201 77.590 69.986 1.00 76.12 C
ATOM 16 O2 U A 988 13.254 78.753 69.615 1.00 76.00 O
ATOM 17 N3 U A 988 12.005 76.953 70.188 1.00 77.66 N
ATOM 18 C4 U A 988 11.813 75.651 70.603 1.00 78.30 C
ATOM 19 O4 U A 988 10.662 75.240 70.785 1.00 80.11 O
ATOM 20 C5 U A 988 13.019 74.909 70.830 1.00 76.35 C
ATOM 21 C6 U A 988 14.204 75.498 70.647 1.00 75.41 C
ATOM 22 P U A 989 19.407 79.902 70.068 1.00 68.06 P
ATOM 23 OP1 U A 989 19.194 81.299 69.617 1.00 69.12 O
ATOM 24 OP2 U A 989 20.358 79.028 69.334 1.00 68.15 O
ATOM 25 O5' U A 989 19.847 79.905 71.598 1.00 66.64 O
TER

ATOM 1 O3' C B1232 10.429 79.663 71.340 1.00 60.00 O
ATOM 2 P A B1233 9.768 79.825 69.885 1.00 60.57 P
ATOM 3 OP1 A B1233 9.535 78.456 69.363 1.00 61.38 O
ATOM 4 OP2 A B1233 10.582 80.770 69.097 1.00 61.19 O
ATOM 5 O5' A B1233 8.357 80.512 70.173 1.00 59.07 O
ATOM 6 C5' A B1233 7.296 79.765 70.798 1.00 58.02 C
ATOM 7 C4' A B1233 5.980 80.497 70.683 1.00 57.68 C
ATOM 8 O4' A B1233 5.985 81.667 71.535 1.00 58.94 O
ATOM 9 C3' A B1233 5.623 81.052 69.321 1.00 58.98 C
ATOM 10 O3' A B1233 5.140 80.056 68.434 1.00 60.06 O
ATOM 11 C2' A B1233 4.580 82.100 69.677 1.00 59.02 C
ATOM 12 O2' A B1233 3.337 81.534 70.009 1.00 57.95 O
ATOM 13 C1' A B1233 5.179 82.683 70.956 1.00 60.17 C
ATOM 14 N9 A B1233 6.012 83.866 70.717 1.00 61.82 N
ATOM 15 C8 A B1233 7.358 83.916 70.438 1.00 62.31 C
ATOM 16 N7 A B1233 7.819 85.132 70.275 1.00 61.59 N
ATOM 17 C5 A B1233 6.705 85.937 70.455 1.00 60.79 C
ATOM 18 C6 A B1233 6.530 87.326 70.406 1.00 60.79 C
ATOM 19 N6 A B1233 7.514 88.186 70.148 1.00 61.47 N
ATOM 20 N1 A B1233 5.293 87.811 70.630 1.00 60.65 N
ATOM 21 C2 A B1233 4.303 86.948 70.880 1.00 61.01 C
ATOM 22 N3 A B1233 4.341 85.621 70.949 1.00 60.94 N
ATOM 23 C4 A B1233 5.586 85.172 70.726 1.00 61.10 C
ATOM 24 P C B1234 5.511 80.150 66.873 1.00 61.39 P
ATOM 25 OP1 C B1234 4.922 78.973 66.199 1.00 62.40 O
ATOM 26 OP2 C B1234 6.964 80.413 66.740 1.00 63.22 O
ATOM 27 O5' C B1234 4.729 81.448 66.392 1.00 61.42 O
TER

Atoms:
C4: (11.813,75.651,70.603)
N3: (12.005,76.953,70.188)
OP1: (17.300,73.477,72.772)
OP2: (17.435,71.946,70.712)
C2: (13.201,77.590,69.986)
C1': (15.650,77.439,70.046)
C3': (17.736,78.077,70.924)
O5': (18.007,74.364,70.557)
O4': (16.578,76.452,69.630)
C5': (18.341,75.643,71.103)
P: (17.965,73.083,71.500)
C4': (17.888,76.754,70.187)
C2': (16.262,78.050,71.307)
O2': (15.730,79.321,71.610)
N1: (14.329,76.812,70.236)
O4: (10.662,75.240,70.785)
O2: (13.254,78.753,69.615)
C6: (14.204,75.498,70.647)
C5: (13.019,74.909,70.830)
O3': (17.983,79.165,70.046)
OP1: (9.535,78.456,69.363)
OP2: (10.582,80.770,69.097)
C3': (5.623,81.052,69.321)
C1': (5.179,82.683,70.956)
C5': (7.296,79.765,70.798)
O4': (5.985,81.667,71.535)
C8: (7.358,83.916,70.438)
O2': (3.337,81.534,70.009)
C6: (6.530,87.326,70.406)
C5: (6.705,85.937,70.455)
C4: (5.586,85.172,70.726)
P: (9.768,79.825,69.885)
C4': (5.980,80.497,70.683)
C2': (4.580,82.100,69.677)
C2: (4.303,86.948,70.880)
N1: (5.293,87.811,70.630)
N3: (4.341,85.621,70.949)
N6: (7.514,88.186,70.148)
N7: (7.819,85.132,70.275)
N9: (6.012,83.866,70.717)
O5': (8.357,80.512,70.173)
O3': (5.140,80.056,68.434)
Image (generated by PyMOL):
PyMOL image
show in jmol