Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11380:12209
Extra
PDB:
ATOM 1 O3' A A1379 51.933 -1.175 73.064 1.00 33.53 O
ATOM 2 P U A1380 51.019 -0.326 74.046 1.00 38.41 P
ATOM 3 OP1 U A1380 51.329 -0.722 75.405 1.00 38.50 O
ATOM 4 OP2 U A1380 49.659 -0.504 73.575 1.00 38.32 O
ATOM 5 O5' U A1380 51.499 1.153 73.789 1.00 38.50 O
ATOM 6 C5' U A1380 51.211 1.815 72.587 1.00 38.46 C
ATOM 7 C4' U A1380 50.419 3.044 72.854 1.00 38.53 C
ATOM 8 O4' U A1380 49.022 2.721 72.883 1.00 38.46 O
ATOM 9 C3' U A1380 50.665 3.682 74.195 1.00 38.67 C
ATOM 10 O3' U A1380 51.812 4.495 74.160 1.00 38.78 O
ATOM 11 C2' U A1380 49.371 4.455 74.462 1.00 38.70 C
ATOM 12 O2' U A1380 49.406 5.730 73.857 1.00 38.78 O
ATOM 13 C1' U A1380 48.342 3.631 73.715 1.00 38.56 C
ATOM 14 N1 U A1380 47.428 2.907 74.612 1.00 38.54 N
ATOM 15 C2 U A1380 46.377 3.659 75.035 1.00 38.60 C
ATOM 16 O2 U A1380 46.292 4.819 74.700 1.00 38.67 O
ATOM 17 N3 U A1380 45.502 3.047 75.874 1.00 38.59 N
ATOM 18 C4 U A1380 45.572 1.768 76.277 1.00 38.53 C
ATOM 19 O4 U A1380 44.711 1.328 77.004 1.00 38.54 O
ATOM 20 C5 U A1380 46.675 1.044 75.792 1.00 38.47 C
ATOM 21 C6 U A1380 47.551 1.615 74.984 1.00 38.47 C
ATOM 22 P C A1381 52.584 4.891 75.489 1.00 32.56 P
ATOM 23 OP1 C A1381 51.644 5.639 76.311 1.00 32.64 O
ATOM 24 OP2 C A1381 53.866 5.558 75.046 1.00 32.64 O
ATOM 25 O5' C A1381 52.893 3.481 76.176 1.00 32.51 O
TER
ATOM 1 O3' A B2208 40.683 4.913 75.872 1.00124.98 O
ATOM 2 P A B2209 42.169 4.595 75.329 1.00 83.72 P
ATOM 3 OP1 A B2209 43.000 4.250 76.511 1.00 83.78 O
ATOM 4 OP2 A B2209 42.570 5.732 74.484 1.00 83.77 O
ATOM 5 O5' A B2209 41.940 3.293 74.410 1.00 83.56 O
ATOM 6 C5' A B2209 40.747 2.501 74.534 1.00 83.51 C
ATOM 7 C4' A B2209 40.496 1.636 73.320 1.00 83.38 C
ATOM 8 O4' A B2209 41.765 1.072 72.860 1.00 83.31 O
ATOM 9 C3' A B2209 39.557 0.436 73.548 1.00 83.32 C
ATOM 10 O3' A B2209 38.846 0.163 72.321 1.00 83.26 O
ATOM 11 C2' A B2209 40.570 -0.685 73.831 1.00 83.27 C
ATOM 12 O2' A B2209 40.092 -2.005 73.668 1.00 83.19 O
ATOM 13 C1' A B2209 41.659 -0.343 72.820 1.00 83.23 C
ATOM 14 N9 A B2209 42.975 -0.943 73.113 1.00 83.21 N
ATOM 15 C8 A B2209 43.920 -0.487 74.000 1.00 83.29 C
ATOM 16 N7 A B2209 44.985 -1.245 74.065 1.00 83.27 N
ATOM 17 C5 A B2209 44.751 -2.264 73.157 1.00 83.17 C
ATOM 18 C6 A B2209 45.544 -3.362 72.787 1.00 83.12 C
ATOM 19 N6 A B2209 46.758 -3.572 73.323 1.00 83.16 N
ATOM 20 N1 A B2209 45.028 -4.211 71.872 1.00 83.04 N
ATOM 21 C2 A B2209 43.811 -3.952 71.366 1.00 83.01 C
ATOM 22 N3 A B2209 42.972 -2.951 71.626 1.00 83.05 N
ATOM 23 C4 A B2209 43.514 -2.108 72.549 1.00 83.13 C
ATOM 24 P G B2210 37.484 -0.715 72.287 1.00 96.76 P
ATOM 25 OP1 G B2210 36.827 -0.540 73.602 1.00 96.84 O
ATOM 26 OP2 G B2210 37.840 -2.116 71.828 1.00 96.66 O
ATOM 27 O5' G B2210 36.639 0.021 71.136 1.00 96.78 O
TER
ATOM 2 P U A1380 51.019 -0.326 74.046 1.00 38.41 P
ATOM 3 OP1 U A1380 51.329 -0.722 75.405 1.00 38.50 O
ATOM 4 OP2 U A1380 49.659 -0.504 73.575 1.00 38.32 O
ATOM 5 O5' U A1380 51.499 1.153 73.789 1.00 38.50 O
ATOM 6 C5' U A1380 51.211 1.815 72.587 1.00 38.46 C
ATOM 7 C4' U A1380 50.419 3.044 72.854 1.00 38.53 C
ATOM 8 O4' U A1380 49.022 2.721 72.883 1.00 38.46 O
ATOM 9 C3' U A1380 50.665 3.682 74.195 1.00 38.67 C
ATOM 10 O3' U A1380 51.812 4.495 74.160 1.00 38.78 O
ATOM 11 C2' U A1380 49.371 4.455 74.462 1.00 38.70 C
ATOM 12 O2' U A1380 49.406 5.730 73.857 1.00 38.78 O
ATOM 13 C1' U A1380 48.342 3.631 73.715 1.00 38.56 C
ATOM 14 N1 U A1380 47.428 2.907 74.612 1.00 38.54 N
ATOM 15 C2 U A1380 46.377 3.659 75.035 1.00 38.60 C
ATOM 16 O2 U A1380 46.292 4.819 74.700 1.00 38.67 O
ATOM 17 N3 U A1380 45.502 3.047 75.874 1.00 38.59 N
ATOM 18 C4 U A1380 45.572 1.768 76.277 1.00 38.53 C
ATOM 19 O4 U A1380 44.711 1.328 77.004 1.00 38.54 O
ATOM 20 C5 U A1380 46.675 1.044 75.792 1.00 38.47 C
ATOM 21 C6 U A1380 47.551 1.615 74.984 1.00 38.47 C
ATOM 22 P C A1381 52.584 4.891 75.489 1.00 32.56 P
ATOM 23 OP1 C A1381 51.644 5.639 76.311 1.00 32.64 O
ATOM 24 OP2 C A1381 53.866 5.558 75.046 1.00 32.64 O
ATOM 25 O5' C A1381 52.893 3.481 76.176 1.00 32.51 O
TER
ATOM 1 O3' A B2208 40.683 4.913 75.872 1.00124.98 O
ATOM 2 P A B2209 42.169 4.595 75.329 1.00 83.72 P
ATOM 3 OP1 A B2209 43.000 4.250 76.511 1.00 83.78 O
ATOM 4 OP2 A B2209 42.570 5.732 74.484 1.00 83.77 O
ATOM 5 O5' A B2209 41.940 3.293 74.410 1.00 83.56 O
ATOM 6 C5' A B2209 40.747 2.501 74.534 1.00 83.51 C
ATOM 7 C4' A B2209 40.496 1.636 73.320 1.00 83.38 C
ATOM 8 O4' A B2209 41.765 1.072 72.860 1.00 83.31 O
ATOM 9 C3' A B2209 39.557 0.436 73.548 1.00 83.32 C
ATOM 10 O3' A B2209 38.846 0.163 72.321 1.00 83.26 O
ATOM 11 C2' A B2209 40.570 -0.685 73.831 1.00 83.27 C
ATOM 12 O2' A B2209 40.092 -2.005 73.668 1.00 83.19 O
ATOM 13 C1' A B2209 41.659 -0.343 72.820 1.00 83.23 C
ATOM 14 N9 A B2209 42.975 -0.943 73.113 1.00 83.21 N
ATOM 15 C8 A B2209 43.920 -0.487 74.000 1.00 83.29 C
ATOM 16 N7 A B2209 44.985 -1.245 74.065 1.00 83.27 N
ATOM 17 C5 A B2209 44.751 -2.264 73.157 1.00 83.17 C
ATOM 18 C6 A B2209 45.544 -3.362 72.787 1.00 83.12 C
ATOM 19 N6 A B2209 46.758 -3.572 73.323 1.00 83.16 N
ATOM 20 N1 A B2209 45.028 -4.211 71.872 1.00 83.04 N
ATOM 21 C2 A B2209 43.811 -3.952 71.366 1.00 83.01 C
ATOM 22 N3 A B2209 42.972 -2.951 71.626 1.00 83.05 N
ATOM 23 C4 A B2209 43.514 -2.108 72.549 1.00 83.13 C
ATOM 24 P G B2210 37.484 -0.715 72.287 1.00 96.76 P
ATOM 25 OP1 G B2210 36.827 -0.540 73.602 1.00 96.84 O
ATOM 26 OP2 G B2210 37.840 -2.116 71.828 1.00 96.66 O
ATOM 27 O5' G B2210 36.639 0.021 71.136 1.00 96.78 O
TER
Atoms:
C4: (45.572,1.768,76.277)
N3: (45.502,3.047,75.874)
OP1: (51.329,-0.722,75.405)
OP2: (49.659,-0.504,73.575)
C2: (46.377,3.659,75.035)
C1': (48.342,3.631,73.715)
C3': (50.665,3.682,74.195)
O5': (51.499,1.153,73.789)
O4': (49.022,2.721,72.883)
C5': (51.211,1.815,72.587)
P: (51.019,-0.326,74.046)
C4': (50.419,3.044,72.854)
C2': (49.371,4.455,74.462)
O2': (49.406,5.730,73.857)
N1: (47.428,2.907,74.612)
O4: (44.711,1.328,77.004)
O2: (46.292,4.819,74.700)
C6: (47.551,1.615,74.984)
C5: (46.675,1.044,75.792)
O3': (51.812,4.495,74.160)
N3: (45.502,3.047,75.874)
OP1: (51.329,-0.722,75.405)
OP2: (49.659,-0.504,73.575)
C2: (46.377,3.659,75.035)
C1': (48.342,3.631,73.715)
C3': (50.665,3.682,74.195)
O5': (51.499,1.153,73.789)
O4': (49.022,2.721,72.883)
C5': (51.211,1.815,72.587)
P: (51.019,-0.326,74.046)
C4': (50.419,3.044,72.854)
C2': (49.371,4.455,74.462)
O2': (49.406,5.730,73.857)
N1: (47.428,2.907,74.612)
O4: (44.711,1.328,77.004)
O2: (46.292,4.819,74.700)
C6: (47.551,1.615,74.984)
C5: (46.675,1.044,75.792)
O3': (51.812,4.495,74.160)
OP1: (43.000,4.250,76.511)
OP2: (42.570,5.732,74.484)
C3': (39.557,0.436,73.548)
C1': (41.659,-0.343,72.820)
C5': (40.747,2.501,74.534)
O4': (41.765,1.072,72.860)
C8: (43.920,-0.487,74.000)
O2': (40.092,-2.005,73.668)
C6: (45.544,-3.362,72.787)
C5: (44.751,-2.264,73.157)
C4: (43.514,-2.108,72.549)
P: (42.169,4.595,75.329)
C4': (40.496,1.636,73.320)
C2': (40.570,-0.685,73.831)
C2: (43.811,-3.952,71.366)
N1: (45.028,-4.211,71.872)
N3: (42.972,-2.951,71.626)
N6: (46.758,-3.572,73.323)
N7: (44.985,-1.245,74.065)
N9: (42.975,-0.943,73.113)
O5': (41.940,3.293,74.410)
O3': (38.846,0.163,72.321)
OP2: (42.570,5.732,74.484)
C3': (39.557,0.436,73.548)
C1': (41.659,-0.343,72.820)
C5': (40.747,2.501,74.534)
O4': (41.765,1.072,72.860)
C8: (43.920,-0.487,74.000)
O2': (40.092,-2.005,73.668)
C6: (45.544,-3.362,72.787)
C5: (44.751,-2.264,73.157)
C4: (43.514,-2.108,72.549)
P: (42.169,4.595,75.329)
C4': (40.496,1.636,73.320)
C2': (40.570,-0.685,73.831)
C2: (43.811,-3.952,71.366)
N1: (45.028,-4.211,71.872)
N3: (42.972,-2.951,71.626)
N6: (46.758,-3.572,73.323)
N7: (44.985,-1.245,74.065)
N9: (42.975,-0.943,73.113)
O5': (41.940,3.293,74.410)
O3': (38.846,0.163,72.321)
Image (generated by PyMOL):