Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2DU4:C53:C56
Extra
PDB:
ATOM 1 O3' U A 52 5.089 69.723 -61.169 1.00139.62 O
ATOM 2 P U A 53 3.483 69.608 -61.013 1.00140.68 P
ATOM 3 OP1 U A 53 2.919 70.157 -62.282 1.00110.24 O
ATOM 4 OP2 U A 53 3.027 70.148 -59.696 1.00 99.18 O
ATOM 5 O5' U A 53 3.204 68.043 -60.977 1.00112.12 O
ATOM 6 C5' U A 53 3.452 67.254 -62.120 1.00 98.47 C
ATOM 7 C4' U A 53 3.811 65.851 -61.713 1.00110.95 C
ATOM 8 O4' U A 53 4.761 65.902 -60.618 1.00 87.15 O
ATOM 9 C3' U A 53 2.727 64.988 -61.098 1.00116.85 C
ATOM 10 O3' U A 53 1.778 64.546 -62.060 1.00125.82 O
ATOM 11 C2' U A 53 3.564 63.859 -60.508 1.00106.96 C
ATOM 12 O2' U A 53 3.988 62.921 -61.499 1.00 69.33 O
ATOM 13 C1' U A 53 4.745 64.657 -59.939 1.00 94.76 C
ATOM 14 N1 U A 53 4.613 64.923 -58.502 1.00102.32 N
ATOM 15 C2 U A 53 5.009 63.920 -57.645 1.00107.55 C
ATOM 16 O2 U A 53 5.475 62.868 -58.045 1.00112.69 O
ATOM 17 N3 U A 53 4.836 64.191 -56.305 1.00111.45 N
ATOM 18 C4 U A 53 4.311 65.345 -55.750 1.00111.49 C
ATOM 19 O4 U A 53 4.196 65.431 -54.521 1.00108.22 O
ATOM 20 C5 U A 53 3.938 66.352 -56.711 1.00101.58 C
ATOM 21 C6 U A 53 4.103 66.112 -58.023 1.00103.45 C
ATOM 22 P C A 54 0.224 64.831 -61.797 1.00109.22 P
ATOM 23 OP1 C A 54 -0.434 65.221 -63.083 1.00 98.49 O
ATOM 24 OP2 C A 54 0.177 65.747 -60.624 1.00109.33 O
ATOM 25 O5' C A 54 -0.350 63.441 -61.284 1.00107.63 O
TER
ATOM 1 O3' G B 55 4.494 60.136 -54.240 1.00133.15 O
ATOM 2 P A B 56 5.674 61.131 -53.785 1.00133.80 P
ATOM 3 OP1 A B 56 5.655 61.166 -52.298 1.00100.69 O
ATOM 4 OP2 A B 56 5.593 62.404 -54.560 1.00101.43 O
ATOM 5 O5' A B 56 6.999 60.386 -54.260 1.00146.98 O
ATOM 6 C5' A B 56 7.570 59.319 -53.502 1.00145.53 C
ATOM 7 C4' A B 56 9.057 59.535 -53.377 1.00139.15 C
ATOM 8 O4' A B 56 9.531 59.887 -54.699 1.00122.37 O
ATOM 9 C3' A B 56 9.456 60.703 -52.476 1.00141.11 C
ATOM 10 O3' A B 56 9.576 60.328 -51.078 1.00141.36 O
ATOM 11 C2' A B 56 10.687 61.312 -53.146 1.00132.39 C
ATOM 12 O2' A B 56 11.914 60.808 -52.681 1.00166.87 O
ATOM 13 C1' A B 56 10.507 60.896 -54.607 1.00123.51 C
ATOM 14 N9 A B 56 10.204 61.934 -55.586 1.00114.36 N
ATOM 15 C8 A B 56 9.332 62.995 -55.530 1.00111.82 C
ATOM 16 N7 A B 56 9.332 63.734 -56.619 1.00112.82 N
ATOM 17 C5 A B 56 10.268 63.115 -57.449 1.00117.44 C
ATOM 18 C6 A B 56 10.745 63.403 -58.770 1.00113.51 C
ATOM 19 N6 A B 56 10.310 64.423 -59.523 1.00107.19 N
ATOM 20 N1 A B 56 11.694 62.581 -59.291 1.00 94.80 N
ATOM 21 C2 A B 56 12.115 61.538 -58.553 1.00 99.43 C
ATOM 22 N3 A B 56 11.739 61.160 -57.326 1.00101.22 N
ATOM 23 C4 A B 56 10.809 62.003 -56.823 1.00120.19 C
ATOM 24 P A B 57 10.640 59.191 -50.591 1.00136.30 P
ATOM 25 OP1 A B 57 10.655 58.096 -51.606 1.00120.05 O
ATOM 26 OP2 A B 57 10.318 58.859 -49.174 1.00112.93 O
ATOM 27 O5' A B 57 12.068 59.913 -50.628 1.00140.54 O
TER
ATOM 2 P U A 53 3.483 69.608 -61.013 1.00140.68 P
ATOM 3 OP1 U A 53 2.919 70.157 -62.282 1.00110.24 O
ATOM 4 OP2 U A 53 3.027 70.148 -59.696 1.00 99.18 O
ATOM 5 O5' U A 53 3.204 68.043 -60.977 1.00112.12 O
ATOM 6 C5' U A 53 3.452 67.254 -62.120 1.00 98.47 C
ATOM 7 C4' U A 53 3.811 65.851 -61.713 1.00110.95 C
ATOM 8 O4' U A 53 4.761 65.902 -60.618 1.00 87.15 O
ATOM 9 C3' U A 53 2.727 64.988 -61.098 1.00116.85 C
ATOM 10 O3' U A 53 1.778 64.546 -62.060 1.00125.82 O
ATOM 11 C2' U A 53 3.564 63.859 -60.508 1.00106.96 C
ATOM 12 O2' U A 53 3.988 62.921 -61.499 1.00 69.33 O
ATOM 13 C1' U A 53 4.745 64.657 -59.939 1.00 94.76 C
ATOM 14 N1 U A 53 4.613 64.923 -58.502 1.00102.32 N
ATOM 15 C2 U A 53 5.009 63.920 -57.645 1.00107.55 C
ATOM 16 O2 U A 53 5.475 62.868 -58.045 1.00112.69 O
ATOM 17 N3 U A 53 4.836 64.191 -56.305 1.00111.45 N
ATOM 18 C4 U A 53 4.311 65.345 -55.750 1.00111.49 C
ATOM 19 O4 U A 53 4.196 65.431 -54.521 1.00108.22 O
ATOM 20 C5 U A 53 3.938 66.352 -56.711 1.00101.58 C
ATOM 21 C6 U A 53 4.103 66.112 -58.023 1.00103.45 C
ATOM 22 P C A 54 0.224 64.831 -61.797 1.00109.22 P
ATOM 23 OP1 C A 54 -0.434 65.221 -63.083 1.00 98.49 O
ATOM 24 OP2 C A 54 0.177 65.747 -60.624 1.00109.33 O
ATOM 25 O5' C A 54 -0.350 63.441 -61.284 1.00107.63 O
TER
ATOM 1 O3' G B 55 4.494 60.136 -54.240 1.00133.15 O
ATOM 2 P A B 56 5.674 61.131 -53.785 1.00133.80 P
ATOM 3 OP1 A B 56 5.655 61.166 -52.298 1.00100.69 O
ATOM 4 OP2 A B 56 5.593 62.404 -54.560 1.00101.43 O
ATOM 5 O5' A B 56 6.999 60.386 -54.260 1.00146.98 O
ATOM 6 C5' A B 56 7.570 59.319 -53.502 1.00145.53 C
ATOM 7 C4' A B 56 9.057 59.535 -53.377 1.00139.15 C
ATOM 8 O4' A B 56 9.531 59.887 -54.699 1.00122.37 O
ATOM 9 C3' A B 56 9.456 60.703 -52.476 1.00141.11 C
ATOM 10 O3' A B 56 9.576 60.328 -51.078 1.00141.36 O
ATOM 11 C2' A B 56 10.687 61.312 -53.146 1.00132.39 C
ATOM 12 O2' A B 56 11.914 60.808 -52.681 1.00166.87 O
ATOM 13 C1' A B 56 10.507 60.896 -54.607 1.00123.51 C
ATOM 14 N9 A B 56 10.204 61.934 -55.586 1.00114.36 N
ATOM 15 C8 A B 56 9.332 62.995 -55.530 1.00111.82 C
ATOM 16 N7 A B 56 9.332 63.734 -56.619 1.00112.82 N
ATOM 17 C5 A B 56 10.268 63.115 -57.449 1.00117.44 C
ATOM 18 C6 A B 56 10.745 63.403 -58.770 1.00113.51 C
ATOM 19 N6 A B 56 10.310 64.423 -59.523 1.00107.19 N
ATOM 20 N1 A B 56 11.694 62.581 -59.291 1.00 94.80 N
ATOM 21 C2 A B 56 12.115 61.538 -58.553 1.00 99.43 C
ATOM 22 N3 A B 56 11.739 61.160 -57.326 1.00101.22 N
ATOM 23 C4 A B 56 10.809 62.003 -56.823 1.00120.19 C
ATOM 24 P A B 57 10.640 59.191 -50.591 1.00136.30 P
ATOM 25 OP1 A B 57 10.655 58.096 -51.606 1.00120.05 O
ATOM 26 OP2 A B 57 10.318 58.859 -49.174 1.00112.93 O
ATOM 27 O5' A B 57 12.068 59.913 -50.628 1.00140.54 O
TER
Atoms:
C4: (4.311,65.345,-55.750)
N3: (4.836,64.191,-56.305)
OP1: (2.919,70.157,-62.282)
OP2: (3.027,70.148,-59.696)
C2: (5.009,63.920,-57.645)
C1': (4.745,64.657,-59.939)
C3': (2.727,64.988,-61.098)
O5': (3.204,68.043,-60.977)
O4': (4.761,65.902,-60.618)
C5': (3.452,67.254,-62.120)
P: (3.483,69.608,-61.013)
C4': (3.811,65.851,-61.713)
C2': (3.564,63.859,-60.508)
O2': (3.988,62.921,-61.499)
N1: (4.613,64.923,-58.502)
O4: (4.196,65.431,-54.521)
O2: (5.475,62.868,-58.045)
C6: (4.103,66.112,-58.023)
C5: (3.938,66.352,-56.711)
O3': (1.778,64.546,-62.060)
N3: (4.836,64.191,-56.305)
OP1: (2.919,70.157,-62.282)
OP2: (3.027,70.148,-59.696)
C2: (5.009,63.920,-57.645)
C1': (4.745,64.657,-59.939)
C3': (2.727,64.988,-61.098)
O5': (3.204,68.043,-60.977)
O4': (4.761,65.902,-60.618)
C5': (3.452,67.254,-62.120)
P: (3.483,69.608,-61.013)
C4': (3.811,65.851,-61.713)
C2': (3.564,63.859,-60.508)
O2': (3.988,62.921,-61.499)
N1: (4.613,64.923,-58.502)
O4: (4.196,65.431,-54.521)
O2: (5.475,62.868,-58.045)
C6: (4.103,66.112,-58.023)
C5: (3.938,66.352,-56.711)
O3': (1.778,64.546,-62.060)
OP1: (5.655,61.166,-52.298)
OP2: (5.593,62.404,-54.560)
C3': (9.456,60.703,-52.476)
C1': (10.507,60.896,-54.607)
C5': (7.570,59.319,-53.502)
O4': (9.531,59.887,-54.699)
C8: (9.332,62.995,-55.530)
O2': (11.914,60.808,-52.681)
C6: (10.745,63.403,-58.770)
C5: (10.268,63.115,-57.449)
C4: (10.809,62.003,-56.823)
P: (5.674,61.131,-53.785)
C4': (9.057,59.535,-53.377)
C2': (10.687,61.312,-53.146)
C2: (12.115,61.538,-58.553)
N1: (11.694,62.581,-59.291)
N3: (11.739,61.160,-57.326)
N6: (10.310,64.423,-59.523)
N7: (9.332,63.734,-56.619)
N9: (10.204,61.934,-55.586)
O5': (6.999,60.386,-54.260)
O3': (9.576,60.328,-51.078)
OP2: (5.593,62.404,-54.560)
C3': (9.456,60.703,-52.476)
C1': (10.507,60.896,-54.607)
C5': (7.570,59.319,-53.502)
O4': (9.531,59.887,-54.699)
C8: (9.332,62.995,-55.530)
O2': (11.914,60.808,-52.681)
C6: (10.745,63.403,-58.770)
C5: (10.268,63.115,-57.449)
C4: (10.809,62.003,-56.823)
P: (5.674,61.131,-53.785)
C4': (9.057,59.535,-53.377)
C2': (10.687,61.312,-53.146)
C2: (12.115,61.538,-58.553)
N1: (11.694,62.581,-59.291)
N3: (11.739,61.160,-57.326)
N6: (10.310,64.423,-59.523)
N7: (9.332,63.734,-56.619)
N9: (10.204,61.934,-55.586)
O5': (6.999,60.386,-54.260)
O3': (9.576,60.328,-51.078)
Image (generated by PyMOL):