Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YHQ:0578:0556
Extra
PDB:
ATOM 1 O3' U A 577 -11.868 93.441 106.804 1.00 58.70 O
ATOM 2 P A A 578 -11.447 94.772 106.008 1.00 59.68 P
ATOM 3 OP1 A A 578 -12.606 95.233 105.208 1.00 61.11 O
ATOM 4 OP2 A A 578 -10.151 94.511 105.331 1.00 60.72 O
ATOM 5 O5' A A 578 -11.190 95.835 107.163 1.00 57.01 O
ATOM 6 C5' A A 578 -12.281 96.436 107.866 1.00 54.80 C
ATOM 7 C4' A A 578 -11.766 97.495 108.803 1.00 54.34 C
ATOM 8 O4' A A 578 -10.985 96.866 109.852 1.00 54.04 O
ATOM 9 C3' A A 578 -10.789 98.470 108.179 1.00 55.17 C
ATOM 10 O3' A A 578 -11.408 99.488 107.420 1.00 57.01 O
ATOM 11 C2' A A 578 -10.038 98.992 109.390 1.00 55.71 C
ATOM 12 O2' A A 578 -10.754 99.972 110.117 1.00 56.98 O
ATOM 13 C1' A A 578 -9.894 97.708 110.207 1.00 53.69 C
ATOM 14 N9 A A 578 -8.649 97.004 109.891 1.00 50.72 N
ATOM 15 C8 A A 578 -8.485 95.868 109.137 1.00 49.27 C
ATOM 16 N7 A A 578 -7.242 95.471 109.044 1.00 48.94 N
ATOM 17 C5 A A 578 -6.537 96.409 109.785 1.00 48.79 C
ATOM 18 C6 A A 578 -5.170 96.543 110.085 1.00 48.69 C
ATOM 19 N6 A A 578 -4.230 95.695 109.657 1.00 48.06 N
ATOM 20 N1 A A 578 -4.797 97.590 110.851 1.00 48.25 N
ATOM 21 C2 A A 578 -5.741 98.437 111.280 1.00 48.75 C
ATOM 22 N3 A A 578 -7.053 98.415 111.068 1.00 48.36 N
ATOM 23 C4 A A 578 -7.390 97.361 110.306 1.00 48.12 C
ATOM 24 P A A 579 -10.814 99.849 105.973 1.00 57.44 P
ATOM 25 OP1 A A 579 -11.549 101.037 105.456 1.00 58.04 O
ATOM 26 OP2 A A 579 -10.795 98.588 105.175 1.00 56.34 O
ATOM 27 O5' A A 579 -9.314 100.291 106.290 1.00 57.24 O
TER
ATOM 1 O3' U B 555 4.229 92.512 107.872 1.00 37.19 O
ATOM 2 P G B 556 3.674 91.918 109.259 1.00 37.64 P
ATOM 3 OP1 G B 556 4.637 92.277 110.330 1.00 37.37 O
ATOM 4 OP2 G B 556 3.328 90.494 109.031 1.00 33.50 O
ATOM 5 O5' G B 556 2.339 92.742 109.524 1.00 37.17 O
ATOM 6 C5' G B 556 2.384 94.094 109.999 1.00 38.21 C
ATOM 7 C4' G B 556 0.984 94.612 110.212 1.00 42.27 C
ATOM 8 O4' G B 556 0.300 94.734 108.934 1.00 42.29 O
ATOM 9 C3' G B 556 0.073 93.696 111.014 1.00 43.73 C
ATOM 10 O3' G B 556 0.299 93.789 112.412 1.00 46.28 O
ATOM 11 C2' G B 556 -1.305 94.180 110.592 1.00 43.29 C
ATOM 12 O2' G B 556 -1.655 95.403 111.211 1.00 42.86 O
ATOM 13 C1' G B 556 -1.078 94.413 109.098 1.00 42.74 C
ATOM 14 N9 G B 556 -1.370 93.219 108.308 1.00 42.18 N
ATOM 15 C8 G B 556 -0.490 92.226 107.950 1.00 41.90 C
ATOM 16 N7 G B 556 -1.040 91.285 107.234 1.00 41.06 N
ATOM 17 C5 G B 556 -2.364 91.677 107.111 1.00 41.73 C
ATOM 18 C6 G B 556 -3.442 91.055 106.440 1.00 42.06 C
ATOM 19 O6 G B 556 -3.437 90.005 105.796 1.00 43.92 O
ATOM 20 N1 G B 556 -4.619 91.786 106.572 1.00 41.58 N
ATOM 21 C2 G B 556 -4.741 92.966 107.261 1.00 43.69 C
ATOM 22 N2 G B 556 -5.962 93.517 107.283 1.00 44.44 N
ATOM 23 N3 G B 556 -3.739 93.563 107.886 1.00 44.16 N
ATOM 24 C4 G B 556 -2.587 92.867 107.772 1.00 42.62 C
ATOM 25 P A B 557 -0.118 92.565 113.367 1.00 48.91 P
ATOM 26 OP1 A B 557 0.532 92.828 114.676 1.00 48.13 O
ATOM 27 OP2 A B 557 0.118 91.268 112.679 1.00 46.49 O
ATOM 28 O5' A B 557 -1.692 92.752 113.518 1.00 50.18 O
TER
ATOM 2 P A A 578 -11.447 94.772 106.008 1.00 59.68 P
ATOM 3 OP1 A A 578 -12.606 95.233 105.208 1.00 61.11 O
ATOM 4 OP2 A A 578 -10.151 94.511 105.331 1.00 60.72 O
ATOM 5 O5' A A 578 -11.190 95.835 107.163 1.00 57.01 O
ATOM 6 C5' A A 578 -12.281 96.436 107.866 1.00 54.80 C
ATOM 7 C4' A A 578 -11.766 97.495 108.803 1.00 54.34 C
ATOM 8 O4' A A 578 -10.985 96.866 109.852 1.00 54.04 O
ATOM 9 C3' A A 578 -10.789 98.470 108.179 1.00 55.17 C
ATOM 10 O3' A A 578 -11.408 99.488 107.420 1.00 57.01 O
ATOM 11 C2' A A 578 -10.038 98.992 109.390 1.00 55.71 C
ATOM 12 O2' A A 578 -10.754 99.972 110.117 1.00 56.98 O
ATOM 13 C1' A A 578 -9.894 97.708 110.207 1.00 53.69 C
ATOM 14 N9 A A 578 -8.649 97.004 109.891 1.00 50.72 N
ATOM 15 C8 A A 578 -8.485 95.868 109.137 1.00 49.27 C
ATOM 16 N7 A A 578 -7.242 95.471 109.044 1.00 48.94 N
ATOM 17 C5 A A 578 -6.537 96.409 109.785 1.00 48.79 C
ATOM 18 C6 A A 578 -5.170 96.543 110.085 1.00 48.69 C
ATOM 19 N6 A A 578 -4.230 95.695 109.657 1.00 48.06 N
ATOM 20 N1 A A 578 -4.797 97.590 110.851 1.00 48.25 N
ATOM 21 C2 A A 578 -5.741 98.437 111.280 1.00 48.75 C
ATOM 22 N3 A A 578 -7.053 98.415 111.068 1.00 48.36 N
ATOM 23 C4 A A 578 -7.390 97.361 110.306 1.00 48.12 C
ATOM 24 P A A 579 -10.814 99.849 105.973 1.00 57.44 P
ATOM 25 OP1 A A 579 -11.549 101.037 105.456 1.00 58.04 O
ATOM 26 OP2 A A 579 -10.795 98.588 105.175 1.00 56.34 O
ATOM 27 O5' A A 579 -9.314 100.291 106.290 1.00 57.24 O
TER
ATOM 1 O3' U B 555 4.229 92.512 107.872 1.00 37.19 O
ATOM 2 P G B 556 3.674 91.918 109.259 1.00 37.64 P
ATOM 3 OP1 G B 556 4.637 92.277 110.330 1.00 37.37 O
ATOM 4 OP2 G B 556 3.328 90.494 109.031 1.00 33.50 O
ATOM 5 O5' G B 556 2.339 92.742 109.524 1.00 37.17 O
ATOM 6 C5' G B 556 2.384 94.094 109.999 1.00 38.21 C
ATOM 7 C4' G B 556 0.984 94.612 110.212 1.00 42.27 C
ATOM 8 O4' G B 556 0.300 94.734 108.934 1.00 42.29 O
ATOM 9 C3' G B 556 0.073 93.696 111.014 1.00 43.73 C
ATOM 10 O3' G B 556 0.299 93.789 112.412 1.00 46.28 O
ATOM 11 C2' G B 556 -1.305 94.180 110.592 1.00 43.29 C
ATOM 12 O2' G B 556 -1.655 95.403 111.211 1.00 42.86 O
ATOM 13 C1' G B 556 -1.078 94.413 109.098 1.00 42.74 C
ATOM 14 N9 G B 556 -1.370 93.219 108.308 1.00 42.18 N
ATOM 15 C8 G B 556 -0.490 92.226 107.950 1.00 41.90 C
ATOM 16 N7 G B 556 -1.040 91.285 107.234 1.00 41.06 N
ATOM 17 C5 G B 556 -2.364 91.677 107.111 1.00 41.73 C
ATOM 18 C6 G B 556 -3.442 91.055 106.440 1.00 42.06 C
ATOM 19 O6 G B 556 -3.437 90.005 105.796 1.00 43.92 O
ATOM 20 N1 G B 556 -4.619 91.786 106.572 1.00 41.58 N
ATOM 21 C2 G B 556 -4.741 92.966 107.261 1.00 43.69 C
ATOM 22 N2 G B 556 -5.962 93.517 107.283 1.00 44.44 N
ATOM 23 N3 G B 556 -3.739 93.563 107.886 1.00 44.16 N
ATOM 24 C4 G B 556 -2.587 92.867 107.772 1.00 42.62 C
ATOM 25 P A B 557 -0.118 92.565 113.367 1.00 48.91 P
ATOM 26 OP1 A B 557 0.532 92.828 114.676 1.00 48.13 O
ATOM 27 OP2 A B 557 0.118 91.268 112.679 1.00 46.49 O
ATOM 28 O5' A B 557 -1.692 92.752 113.518 1.00 50.18 O
TER
Atoms:
OP1: (-12.606,95.233,105.208)
OP2: (-10.151,94.511,105.331)
C3': (-10.789,98.470,108.179)
C1': (-9.894,97.708,110.207)
C5': (-12.281,96.436,107.866)
O4': (-10.985,96.866,109.852)
C8: (-8.485,95.868,109.137)
O2': (-10.754,99.972,110.117)
C6: (-5.170,96.543,110.085)
C5: (-6.537,96.409,109.785)
C4: (-7.390,97.361,110.306)
P: (-11.447,94.772,106.008)
C4': (-11.766,97.495,108.803)
C2': (-10.038,98.992,109.390)
C2: (-5.741,98.437,111.280)
N1: (-4.797,97.590,110.851)
N3: (-7.053,98.415,111.068)
N6: (-4.230,95.695,109.657)
N7: (-7.242,95.471,109.044)
N9: (-8.649,97.004,109.891)
O5': (-11.190,95.835,107.163)
O3': (-11.408,99.488,107.420)
OP2: (-10.151,94.511,105.331)
C3': (-10.789,98.470,108.179)
C1': (-9.894,97.708,110.207)
C5': (-12.281,96.436,107.866)
O4': (-10.985,96.866,109.852)
C8: (-8.485,95.868,109.137)
O2': (-10.754,99.972,110.117)
C6: (-5.170,96.543,110.085)
C5: (-6.537,96.409,109.785)
C4: (-7.390,97.361,110.306)
P: (-11.447,94.772,106.008)
C4': (-11.766,97.495,108.803)
C2': (-10.038,98.992,109.390)
C2: (-5.741,98.437,111.280)
N1: (-4.797,97.590,110.851)
N3: (-7.053,98.415,111.068)
N6: (-4.230,95.695,109.657)
N7: (-7.242,95.471,109.044)
N9: (-8.649,97.004,109.891)
O5': (-11.190,95.835,107.163)
O3': (-11.408,99.488,107.420)
OP1: (4.637,92.277,110.330)
OP2: (3.328,90.494,109.031)
C3': (0.073,93.696,111.014)
C1': (-1.078,94.413,109.098)
C5': (2.384,94.094,109.999)
O6: (-3.437,90.005,105.796)
O4': (0.300,94.734,108.934)
C8: (-0.490,92.226,107.950)
C2: (-4.741,92.966,107.261)
C6: (-3.442,91.055,106.440)
C5: (-2.364,91.677,107.111)
C4: (-2.587,92.867,107.772)
P: (3.674,91.918,109.259)
C4': (0.984,94.612,110.212)
C2': (-1.305,94.180,110.592)
O2': (-1.655,95.403,111.211)
N1: (-4.619,91.786,106.572)
N2: (-5.962,93.517,107.283)
N3: (-3.739,93.563,107.886)
N7: (-1.040,91.285,107.234)
N9: (-1.370,93.219,108.308)
O5': (2.339,92.742,109.524)
O3': (0.299,93.789,112.412)
OP2: (3.328,90.494,109.031)
C3': (0.073,93.696,111.014)
C1': (-1.078,94.413,109.098)
C5': (2.384,94.094,109.999)
O6: (-3.437,90.005,105.796)
O4': (0.300,94.734,108.934)
C8: (-0.490,92.226,107.950)
C2: (-4.741,92.966,107.261)
C6: (-3.442,91.055,106.440)
C5: (-2.364,91.677,107.111)
C4: (-2.587,92.867,107.772)
P: (3.674,91.918,109.259)
C4': (0.984,94.612,110.212)
C2': (-1.305,94.180,110.592)
O2': (-1.655,95.403,111.211)
N1: (-4.619,91.786,106.572)
N2: (-5.962,93.517,107.283)
N3: (-3.739,93.563,107.886)
N7: (-1.040,91.285,107.234)
N9: (-1.370,93.219,108.308)
O5': (2.339,92.742,109.524)
O3': (0.299,93.789,112.412)
Image (generated by PyMOL):