Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A2016:A2020
Extra
PDB:
ATOM 1 O3' U A2015 42.500 108.906 110.324 1.00 31.43 O
ATOM 2 P G A2016 43.703 108.274 109.483 1.00 30.95 P
ATOM 3 OP1 G A2016 43.300 106.867 109.299 1.00 31.12 O
ATOM 4 OP2 G A2016 44.976 108.591 110.171 1.00 30.85 O
ATOM 5 O5' G A2016 43.641 109.041 108.089 1.00 29.71 O
ATOM 6 C5' G A2016 42.630 108.716 107.096 1.00 27.88 C
ATOM 7 C4' G A2016 42.744 109.640 105.906 1.00 26.93 C
ATOM 8 O4' G A2016 42.577 111.011 106.338 1.00 27.33 O
ATOM 9 C3' G A2016 44.103 109.589 105.244 1.00 25.97 C
ATOM 10 O3' G A2016 44.059 108.539 104.279 1.00 27.36 O
ATOM 11 C2' G A2016 44.242 110.982 104.641 1.00 25.80 C
ATOM 12 O2' G A2016 43.600 111.081 103.389 1.00 26.26 O
ATOM 13 C1' G A2016 43.485 111.841 105.654 1.00 27.07 C
ATOM 14 N9 G A2016 44.387 112.450 106.624 1.00 28.68 N
ATOM 15 C8 G A2016 44.862 111.903 107.795 1.00 29.06 C
ATOM 16 N7 G A2016 45.748 112.654 108.385 1.00 29.14 N
ATOM 17 C5 G A2016 45.842 113.773 107.564 1.00 27.98 C
ATOM 18 C6 G A2016 46.655 114.907 107.665 1.00 28.60 C
ATOM 19 O6 G A2016 47.518 115.144 108.510 1.00 32.65 O
ATOM 20 N1 G A2016 46.410 115.817 106.630 1.00 25.21 N
ATOM 21 C2 G A2016 45.512 115.630 105.619 1.00 24.10 C
ATOM 22 N2 G A2016 45.406 116.607 104.721 1.00 26.67 N
ATOM 23 N3 G A2016 44.768 114.558 105.498 1.00 25.18 N
ATOM 24 C4 G A2016 44.982 113.675 106.498 1.00 27.23 C
ATOM 25 P C A2017 45.300 107.543 104.117 1.00 28.39 P
ATOM 26 OP1 C A2017 44.944 106.467 103.192 1.00 27.89 O
ATOM 27 OP2 C A2017 45.818 107.221 105.456 1.00 28.40 O
ATOM 28 O5' C A2017 46.378 108.419 103.383 1.00 26.97 O
TER
ATOM 1 O3' G B2019 49.970 118.924 105.935 1.00 32.57 O
ATOM 2 P A B2020 48.419 118.906 105.583 1.00 31.28 P
ATOM 3 OP1 A B2020 47.679 118.463 106.786 1.00 29.69 O
ATOM 4 OP2 A B2020 48.276 118.182 104.329 1.00 31.53 O
ATOM 5 O5' A B2020 48.087 120.421 105.258 1.00 30.92 O
ATOM 6 C5' A B2020 47.460 121.274 106.216 1.00 31.37 C
ATOM 7 C4' A B2020 46.087 121.628 105.734 1.00 32.70 C
ATOM 8 O4' A B2020 45.327 120.424 105.444 1.00 33.55 O
ATOM 9 C3' A B2020 45.262 122.410 106.735 1.00 33.65 C
ATOM 10 O3' A B2020 44.433 123.278 105.981 1.00 37.67 O
ATOM 11 C2' A B2020 44.395 121.328 107.362 1.00 34.04 C
ATOM 12 O2' A B2020 43.184 121.752 107.935 1.00 34.66 O
ATOM 13 C1' A B2020 44.103 120.486 106.136 1.00 34.22 C
ATOM 14 N9 A B2020 43.611 119.149 106.408 1.00 35.61 N
ATOM 15 C8 A B2020 43.991 118.246 107.358 1.00 37.31 C
ATOM 16 N7 A B2020 43.323 117.123 107.311 1.00 37.62 N
ATOM 17 C5 A B2020 42.446 117.305 106.251 1.00 37.31 C
ATOM 18 C6 A B2020 41.468 116.480 105.670 1.00 37.96 C
ATOM 19 N6 A B2020 41.183 115.246 106.098 1.00 36.95 N
ATOM 20 N1 A B2020 40.781 116.973 104.625 1.00 38.42 N
ATOM 21 C2 A B2020 41.058 118.210 104.212 1.00 38.39 C
ATOM 22 N3 A B2020 41.944 119.075 104.677 1.00 38.58 N
ATOM 23 C4 A B2020 42.611 118.551 105.702 1.00 36.62 C
ATOM 24 P G B2021 44.973 124.714 105.529 1.00 39.88 P
ATOM 25 OP1 G B2021 45.048 124.748 104.045 1.00 37.93 O
ATOM 26 OP2 G B2021 46.139 125.116 106.333 1.00 41.82 O
ATOM 27 O5' G B2021 43.814 125.671 106.009 1.00 38.24 O
TER
ATOM 2 P G A2016 43.703 108.274 109.483 1.00 30.95 P
ATOM 3 OP1 G A2016 43.300 106.867 109.299 1.00 31.12 O
ATOM 4 OP2 G A2016 44.976 108.591 110.171 1.00 30.85 O
ATOM 5 O5' G A2016 43.641 109.041 108.089 1.00 29.71 O
ATOM 6 C5' G A2016 42.630 108.716 107.096 1.00 27.88 C
ATOM 7 C4' G A2016 42.744 109.640 105.906 1.00 26.93 C
ATOM 8 O4' G A2016 42.577 111.011 106.338 1.00 27.33 O
ATOM 9 C3' G A2016 44.103 109.589 105.244 1.00 25.97 C
ATOM 10 O3' G A2016 44.059 108.539 104.279 1.00 27.36 O
ATOM 11 C2' G A2016 44.242 110.982 104.641 1.00 25.80 C
ATOM 12 O2' G A2016 43.600 111.081 103.389 1.00 26.26 O
ATOM 13 C1' G A2016 43.485 111.841 105.654 1.00 27.07 C
ATOM 14 N9 G A2016 44.387 112.450 106.624 1.00 28.68 N
ATOM 15 C8 G A2016 44.862 111.903 107.795 1.00 29.06 C
ATOM 16 N7 G A2016 45.748 112.654 108.385 1.00 29.14 N
ATOM 17 C5 G A2016 45.842 113.773 107.564 1.00 27.98 C
ATOM 18 C6 G A2016 46.655 114.907 107.665 1.00 28.60 C
ATOM 19 O6 G A2016 47.518 115.144 108.510 1.00 32.65 O
ATOM 20 N1 G A2016 46.410 115.817 106.630 1.00 25.21 N
ATOM 21 C2 G A2016 45.512 115.630 105.619 1.00 24.10 C
ATOM 22 N2 G A2016 45.406 116.607 104.721 1.00 26.67 N
ATOM 23 N3 G A2016 44.768 114.558 105.498 1.00 25.18 N
ATOM 24 C4 G A2016 44.982 113.675 106.498 1.00 27.23 C
ATOM 25 P C A2017 45.300 107.543 104.117 1.00 28.39 P
ATOM 26 OP1 C A2017 44.944 106.467 103.192 1.00 27.89 O
ATOM 27 OP2 C A2017 45.818 107.221 105.456 1.00 28.40 O
ATOM 28 O5' C A2017 46.378 108.419 103.383 1.00 26.97 O
TER
ATOM 1 O3' G B2019 49.970 118.924 105.935 1.00 32.57 O
ATOM 2 P A B2020 48.419 118.906 105.583 1.00 31.28 P
ATOM 3 OP1 A B2020 47.679 118.463 106.786 1.00 29.69 O
ATOM 4 OP2 A B2020 48.276 118.182 104.329 1.00 31.53 O
ATOM 5 O5' A B2020 48.087 120.421 105.258 1.00 30.92 O
ATOM 6 C5' A B2020 47.460 121.274 106.216 1.00 31.37 C
ATOM 7 C4' A B2020 46.087 121.628 105.734 1.00 32.70 C
ATOM 8 O4' A B2020 45.327 120.424 105.444 1.00 33.55 O
ATOM 9 C3' A B2020 45.262 122.410 106.735 1.00 33.65 C
ATOM 10 O3' A B2020 44.433 123.278 105.981 1.00 37.67 O
ATOM 11 C2' A B2020 44.395 121.328 107.362 1.00 34.04 C
ATOM 12 O2' A B2020 43.184 121.752 107.935 1.00 34.66 O
ATOM 13 C1' A B2020 44.103 120.486 106.136 1.00 34.22 C
ATOM 14 N9 A B2020 43.611 119.149 106.408 1.00 35.61 N
ATOM 15 C8 A B2020 43.991 118.246 107.358 1.00 37.31 C
ATOM 16 N7 A B2020 43.323 117.123 107.311 1.00 37.62 N
ATOM 17 C5 A B2020 42.446 117.305 106.251 1.00 37.31 C
ATOM 18 C6 A B2020 41.468 116.480 105.670 1.00 37.96 C
ATOM 19 N6 A B2020 41.183 115.246 106.098 1.00 36.95 N
ATOM 20 N1 A B2020 40.781 116.973 104.625 1.00 38.42 N
ATOM 21 C2 A B2020 41.058 118.210 104.212 1.00 38.39 C
ATOM 22 N3 A B2020 41.944 119.075 104.677 1.00 38.58 N
ATOM 23 C4 A B2020 42.611 118.551 105.702 1.00 36.62 C
ATOM 24 P G B2021 44.973 124.714 105.529 1.00 39.88 P
ATOM 25 OP1 G B2021 45.048 124.748 104.045 1.00 37.93 O
ATOM 26 OP2 G B2021 46.139 125.116 106.333 1.00 41.82 O
ATOM 27 O5' G B2021 43.814 125.671 106.009 1.00 38.24 O
TER
Atoms:
OP1: (43.300,106.867,109.299)
OP2: (44.976,108.591,110.171)
C3': (44.103,109.589,105.244)
C1': (43.485,111.841,105.654)
C5': (42.630,108.716,107.096)
O6: (47.518,115.144,108.510)
O4': (42.577,111.011,106.338)
C8: (44.862,111.903,107.795)
C2: (45.512,115.630,105.619)
C6: (46.655,114.907,107.665)
C5: (45.842,113.773,107.564)
C4: (44.982,113.675,106.498)
P: (43.703,108.274,109.483)
C4': (42.744,109.640,105.906)
C2': (44.242,110.982,104.641)
O2': (43.600,111.081,103.389)
N1: (46.410,115.817,106.630)
N2: (45.406,116.607,104.721)
N3: (44.768,114.558,105.498)
N7: (45.748,112.654,108.385)
N9: (44.387,112.450,106.624)
O5': (43.641,109.041,108.089)
O3': (44.059,108.539,104.279)
OP2: (44.976,108.591,110.171)
C3': (44.103,109.589,105.244)
C1': (43.485,111.841,105.654)
C5': (42.630,108.716,107.096)
O6: (47.518,115.144,108.510)
O4': (42.577,111.011,106.338)
C8: (44.862,111.903,107.795)
C2: (45.512,115.630,105.619)
C6: (46.655,114.907,107.665)
C5: (45.842,113.773,107.564)
C4: (44.982,113.675,106.498)
P: (43.703,108.274,109.483)
C4': (42.744,109.640,105.906)
C2': (44.242,110.982,104.641)
O2': (43.600,111.081,103.389)
N1: (46.410,115.817,106.630)
N2: (45.406,116.607,104.721)
N3: (44.768,114.558,105.498)
N7: (45.748,112.654,108.385)
N9: (44.387,112.450,106.624)
O5': (43.641,109.041,108.089)
O3': (44.059,108.539,104.279)
OP1: (47.679,118.463,106.786)
OP2: (48.276,118.182,104.329)
C3': (45.262,122.410,106.735)
C1': (44.103,120.486,106.136)
C5': (47.460,121.274,106.216)
O4': (45.327,120.424,105.444)
C8: (43.991,118.246,107.358)
O2': (43.184,121.752,107.935)
C6: (41.468,116.480,105.670)
C5: (42.446,117.305,106.251)
C4: (42.611,118.551,105.702)
P: (48.419,118.906,105.583)
C4': (46.087,121.628,105.734)
C2': (44.395,121.328,107.362)
C2: (41.058,118.210,104.212)
N1: (40.781,116.973,104.625)
N3: (41.944,119.075,104.677)
N6: (41.183,115.246,106.098)
N7: (43.323,117.123,107.311)
N9: (43.611,119.149,106.408)
O5': (48.087,120.421,105.258)
O3': (44.433,123.278,105.981)
OP2: (48.276,118.182,104.329)
C3': (45.262,122.410,106.735)
C1': (44.103,120.486,106.136)
C5': (47.460,121.274,106.216)
O4': (45.327,120.424,105.444)
C8: (43.991,118.246,107.358)
O2': (43.184,121.752,107.935)
C6: (41.468,116.480,105.670)
C5: (42.446,117.305,106.251)
C4: (42.611,118.551,105.702)
P: (48.419,118.906,105.583)
C4': (46.087,121.628,105.734)
C2': (44.395,121.328,107.362)
C2: (41.058,118.210,104.212)
N1: (40.781,116.973,104.625)
N3: (41.944,119.075,104.677)
N6: (41.183,115.246,106.098)
N7: (43.323,117.123,107.311)
N9: (43.611,119.149,106.408)
O5': (48.087,120.421,105.258)
O3': (44.433,123.278,105.981)
Image (generated by PyMOL):