Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQ8:0257:0229
Extra
PDB:
ATOM 1 O3' U A 256 79.581 107.578 -4.936 1.00 56.53 O
ATOM 2 P G A 257 78.369 107.138 -3.974 1.00 57.62 P
ATOM 3 OP1 G A 257 77.586 106.096 -4.697 1.00 57.83 O
ATOM 4 OP2 G A 257 77.680 108.367 -3.488 1.00 57.16 O
ATOM 5 O5' G A 257 79.094 106.449 -2.736 1.00 54.99 O
ATOM 6 C5' G A 257 79.769 105.190 -2.878 1.00 53.79 C
ATOM 7 C4' G A 257 80.357 104.782 -1.554 1.00 54.57 C
ATOM 8 O4' G A 257 81.372 105.748 -1.171 1.00 55.17 O
ATOM 9 C3' G A 257 79.363 104.789 -0.403 1.00 54.65 C
ATOM 10 O3' G A 257 78.659 103.550 -0.355 1.00 55.96 O
ATOM 11 C2' G A 257 80.259 105.034 0.804 1.00 53.73 C
ATOM 12 O2' G A 257 80.951 103.873 1.225 1.00 53.27 O
ATOM 13 C1' G A 257 81.285 106.009 0.218 1.00 52.97 C
ATOM 14 N9 G A 257 80.971 107.426 0.390 1.00 49.85 N
ATOM 15 C8 G A 257 79.907 108.120 -0.141 1.00 49.60 C
ATOM 16 N7 G A 257 79.910 109.386 0.181 1.00 47.74 N
ATOM 17 C5 G A 257 81.040 109.536 0.977 1.00 44.94 C
ATOM 18 C6 G A 257 81.560 110.687 1.631 1.00 42.26 C
ATOM 19 O6 G A 257 81.104 111.845 1.641 1.00 38.46 O
ATOM 20 N1 G A 257 82.728 110.390 2.330 1.00 39.85 N
ATOM 21 C2 G A 257 83.316 109.144 2.400 1.00 42.21 C
ATOM 22 N2 G A 257 84.440 109.037 3.125 1.00 40.34 N
ATOM 23 N3 G A 257 82.836 108.070 1.803 1.00 45.87 N
ATOM 24 C4 G A 257 81.705 108.336 1.114 1.00 47.00 C
ATOM 25 P U A 258 77.152 103.504 0.198 1.00 57.33 P
ATOM 26 OP1 U A 258 76.509 102.259 -0.301 1.00 58.35 O
ATOM 27 OP2 U A 258 76.504 104.815 -0.067 1.00 56.73 O
ATOM 28 O5' U A 258 77.354 103.345 1.768 1.00 58.68 O
TER
ATOM 1 O3' C B 228 83.303 112.721 5.943 1.00 46.55 O
ATOM 2 P A B 229 84.674 112.414 5.178 1.00 47.18 P
ATOM 3 OP1 A B 229 85.404 113.710 5.083 1.00 47.56 O
ATOM 4 OP2 A B 229 84.346 111.660 3.941 1.00 47.30 O
ATOM 5 O5' A B 229 85.463 111.438 6.159 1.00 46.92 O
ATOM 6 C5' A B 229 86.222 111.957 7.255 1.00 47.63 C
ATOM 7 C4' A B 229 87.011 110.856 7.917 1.00 47.49 C
ATOM 8 O4' A B 229 86.110 109.881 8.503 1.00 47.96 O
ATOM 9 C3' A B 229 87.857 110.004 6.997 1.00 47.99 C
ATOM 10 O3' A B 229 89.056 110.668 6.640 1.00 49.53 O
ATOM 11 C2' A B 229 88.117 108.780 7.865 1.00 48.77 C
ATOM 12 O2' A B 229 89.111 109.020 8.841 1.00 50.56 O
ATOM 13 C1' A B 229 86.768 108.625 8.574 1.00 47.56 C
ATOM 14 N9 A B 229 85.898 107.586 8.007 1.00 45.86 N
ATOM 15 C8 A B 229 84.851 107.721 7.127 1.00 43.93 C
ATOM 16 N7 A B 229 84.265 106.588 6.826 1.00 42.96 N
ATOM 17 C5 A B 229 84.977 105.642 7.551 1.00 43.46 C
ATOM 18 C6 A B 229 84.851 104.247 7.661 1.00 44.05 C
ATOM 19 N6 A B 229 83.931 103.532 7.005 1.00 44.27 N
ATOM 20 N1 A B 229 85.714 103.601 8.475 1.00 45.08 N
ATOM 21 C2 A B 229 86.641 104.317 9.124 1.00 44.52 C
ATOM 22 N3 A B 229 86.863 105.627 9.096 1.00 43.74 N
ATOM 23 C4 A B 229 85.984 106.240 8.281 1.00 43.79 C
ATOM 24 P A B 230 89.497 110.728 5.094 1.00 49.33 P
ATOM 25 OP1 A B 230 90.713 111.590 5.019 1.00 49.52 O
ATOM 26 OP2 A B 230 88.301 111.071 4.280 1.00 46.56 O
ATOM 27 O5' A B 230 89.906 109.224 4.766 1.00 47.44 O
TER
ATOM 2 P G A 257 78.369 107.138 -3.974 1.00 57.62 P
ATOM 3 OP1 G A 257 77.586 106.096 -4.697 1.00 57.83 O
ATOM 4 OP2 G A 257 77.680 108.367 -3.488 1.00 57.16 O
ATOM 5 O5' G A 257 79.094 106.449 -2.736 1.00 54.99 O
ATOM 6 C5' G A 257 79.769 105.190 -2.878 1.00 53.79 C
ATOM 7 C4' G A 257 80.357 104.782 -1.554 1.00 54.57 C
ATOM 8 O4' G A 257 81.372 105.748 -1.171 1.00 55.17 O
ATOM 9 C3' G A 257 79.363 104.789 -0.403 1.00 54.65 C
ATOM 10 O3' G A 257 78.659 103.550 -0.355 1.00 55.96 O
ATOM 11 C2' G A 257 80.259 105.034 0.804 1.00 53.73 C
ATOM 12 O2' G A 257 80.951 103.873 1.225 1.00 53.27 O
ATOM 13 C1' G A 257 81.285 106.009 0.218 1.00 52.97 C
ATOM 14 N9 G A 257 80.971 107.426 0.390 1.00 49.85 N
ATOM 15 C8 G A 257 79.907 108.120 -0.141 1.00 49.60 C
ATOM 16 N7 G A 257 79.910 109.386 0.181 1.00 47.74 N
ATOM 17 C5 G A 257 81.040 109.536 0.977 1.00 44.94 C
ATOM 18 C6 G A 257 81.560 110.687 1.631 1.00 42.26 C
ATOM 19 O6 G A 257 81.104 111.845 1.641 1.00 38.46 O
ATOM 20 N1 G A 257 82.728 110.390 2.330 1.00 39.85 N
ATOM 21 C2 G A 257 83.316 109.144 2.400 1.00 42.21 C
ATOM 22 N2 G A 257 84.440 109.037 3.125 1.00 40.34 N
ATOM 23 N3 G A 257 82.836 108.070 1.803 1.00 45.87 N
ATOM 24 C4 G A 257 81.705 108.336 1.114 1.00 47.00 C
ATOM 25 P U A 258 77.152 103.504 0.198 1.00 57.33 P
ATOM 26 OP1 U A 258 76.509 102.259 -0.301 1.00 58.35 O
ATOM 27 OP2 U A 258 76.504 104.815 -0.067 1.00 56.73 O
ATOM 28 O5' U A 258 77.354 103.345 1.768 1.00 58.68 O
TER
ATOM 1 O3' C B 228 83.303 112.721 5.943 1.00 46.55 O
ATOM 2 P A B 229 84.674 112.414 5.178 1.00 47.18 P
ATOM 3 OP1 A B 229 85.404 113.710 5.083 1.00 47.56 O
ATOM 4 OP2 A B 229 84.346 111.660 3.941 1.00 47.30 O
ATOM 5 O5' A B 229 85.463 111.438 6.159 1.00 46.92 O
ATOM 6 C5' A B 229 86.222 111.957 7.255 1.00 47.63 C
ATOM 7 C4' A B 229 87.011 110.856 7.917 1.00 47.49 C
ATOM 8 O4' A B 229 86.110 109.881 8.503 1.00 47.96 O
ATOM 9 C3' A B 229 87.857 110.004 6.997 1.00 47.99 C
ATOM 10 O3' A B 229 89.056 110.668 6.640 1.00 49.53 O
ATOM 11 C2' A B 229 88.117 108.780 7.865 1.00 48.77 C
ATOM 12 O2' A B 229 89.111 109.020 8.841 1.00 50.56 O
ATOM 13 C1' A B 229 86.768 108.625 8.574 1.00 47.56 C
ATOM 14 N9 A B 229 85.898 107.586 8.007 1.00 45.86 N
ATOM 15 C8 A B 229 84.851 107.721 7.127 1.00 43.93 C
ATOM 16 N7 A B 229 84.265 106.588 6.826 1.00 42.96 N
ATOM 17 C5 A B 229 84.977 105.642 7.551 1.00 43.46 C
ATOM 18 C6 A B 229 84.851 104.247 7.661 1.00 44.05 C
ATOM 19 N6 A B 229 83.931 103.532 7.005 1.00 44.27 N
ATOM 20 N1 A B 229 85.714 103.601 8.475 1.00 45.08 N
ATOM 21 C2 A B 229 86.641 104.317 9.124 1.00 44.52 C
ATOM 22 N3 A B 229 86.863 105.627 9.096 1.00 43.74 N
ATOM 23 C4 A B 229 85.984 106.240 8.281 1.00 43.79 C
ATOM 24 P A B 230 89.497 110.728 5.094 1.00 49.33 P
ATOM 25 OP1 A B 230 90.713 111.590 5.019 1.00 49.52 O
ATOM 26 OP2 A B 230 88.301 111.071 4.280 1.00 46.56 O
ATOM 27 O5' A B 230 89.906 109.224 4.766 1.00 47.44 O
TER
Atoms:
OP1: (77.586,106.096,-4.697)
OP2: (77.680,108.367,-3.488)
C3': (79.363,104.789,-0.403)
C1': (81.285,106.009,0.218)
C5': (79.769,105.190,-2.878)
O6: (81.104,111.845,1.641)
O4': (81.372,105.748,-1.171)
C8: (79.907,108.120,-0.141)
C2: (83.316,109.144,2.400)
C6: (81.560,110.687,1.631)
C5: (81.040,109.536,0.977)
C4: (81.705,108.336,1.114)
P: (78.369,107.138,-3.974)
C4': (80.357,104.782,-1.554)
C2': (80.259,105.034,0.804)
O2': (80.951,103.873,1.225)
N1: (82.728,110.390,2.330)
N2: (84.440,109.037,3.125)
N3: (82.836,108.070,1.803)
N7: (79.910,109.386,0.181)
N9: (80.971,107.426,0.390)
O5': (79.094,106.449,-2.736)
O3': (78.659,103.550,-0.355)
OP2: (77.680,108.367,-3.488)
C3': (79.363,104.789,-0.403)
C1': (81.285,106.009,0.218)
C5': (79.769,105.190,-2.878)
O6: (81.104,111.845,1.641)
O4': (81.372,105.748,-1.171)
C8: (79.907,108.120,-0.141)
C2: (83.316,109.144,2.400)
C6: (81.560,110.687,1.631)
C5: (81.040,109.536,0.977)
C4: (81.705,108.336,1.114)
P: (78.369,107.138,-3.974)
C4': (80.357,104.782,-1.554)
C2': (80.259,105.034,0.804)
O2': (80.951,103.873,1.225)
N1: (82.728,110.390,2.330)
N2: (84.440,109.037,3.125)
N3: (82.836,108.070,1.803)
N7: (79.910,109.386,0.181)
N9: (80.971,107.426,0.390)
O5': (79.094,106.449,-2.736)
O3': (78.659,103.550,-0.355)
OP1: (85.404,113.710,5.083)
OP2: (84.346,111.660,3.941)
C3': (87.857,110.004,6.997)
C1': (86.768,108.625,8.574)
C5': (86.222,111.957,7.255)
O4': (86.110,109.881,8.503)
C8: (84.851,107.721,7.127)
O2': (89.111,109.020,8.841)
C6: (84.851,104.247,7.661)
C5: (84.977,105.642,7.551)
C4: (85.984,106.240,8.281)
P: (84.674,112.414,5.178)
C4': (87.011,110.856,7.917)
C2': (88.117,108.780,7.865)
C2: (86.641,104.317,9.124)
N1: (85.714,103.601,8.475)
N3: (86.863,105.627,9.096)
N6: (83.931,103.532,7.005)
N7: (84.265,106.588,6.826)
N9: (85.898,107.586,8.007)
O5': (85.463,111.438,6.159)
O3': (89.056,110.668,6.640)
OP2: (84.346,111.660,3.941)
C3': (87.857,110.004,6.997)
C1': (86.768,108.625,8.574)
C5': (86.222,111.957,7.255)
O4': (86.110,109.881,8.503)
C8: (84.851,107.721,7.127)
O2': (89.111,109.020,8.841)
C6: (84.851,104.247,7.661)
C5: (84.977,105.642,7.551)
C4: (85.984,106.240,8.281)
P: (84.674,112.414,5.178)
C4': (87.011,110.856,7.917)
C2': (88.117,108.780,7.865)
C2: (86.641,104.317,9.124)
N1: (85.714,103.601,8.475)
N3: (86.863,105.627,9.096)
N6: (83.931,103.532,7.005)
N7: (84.265,106.588,6.826)
N9: (85.898,107.586,8.007)
O5': (85.463,111.438,6.159)
O3': (89.056,110.668,6.640)
Image (generated by PyMOL):