Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A13:A507
Extra
PDB:
ATOM 1 O3' U A 12 34.370 148.278 74.067 1.00 38.81 O
ATOM 2 P G A 13 34.865 147.892 72.606 1.00 39.68 P
ATOM 3 OP1 G A 13 36.216 148.437 72.415 1.00 41.10 O
ATOM 4 OP2 G A 13 33.775 148.271 71.668 1.00 42.50 O
ATOM 5 O5' G A 13 34.941 146.305 72.616 1.00 41.65 O
ATOM 6 C5' G A 13 35.956 145.584 73.330 1.00 40.08 C
ATOM 7 C4' G A 13 35.581 144.129 73.341 1.00 39.60 C
ATOM 8 O4' G A 13 34.270 143.987 73.958 1.00 40.68 O
ATOM 9 C3' G A 13 35.374 143.608 71.932 1.00 36.94 C
ATOM 10 O3' G A 13 36.600 143.178 71.403 1.00 33.07 O
ATOM 11 C2' G A 13 34.365 142.485 72.102 1.00 38.56 C
ATOM 12 O2' G A 13 34.926 141.260 72.483 1.00 37.84 O
ATOM 13 C1' G A 13 33.505 143.033 73.233 1.00 39.60 C
ATOM 14 N9 G A 13 32.330 143.689 72.694 1.00 40.71 N
ATOM 15 C8 G A 13 32.228 144.950 72.168 1.00 41.24 C
ATOM 16 N7 G A 13 31.008 145.266 71.852 1.00 42.60 N
ATOM 17 C5 G A 13 30.275 144.135 72.178 1.00 42.10 C
ATOM 18 C6 G A 13 28.902 143.895 72.102 1.00 42.18 C
ATOM 19 O6 G A 13 28.015 144.675 71.751 1.00 42.86 O
ATOM 20 N1 G A 13 28.582 142.602 72.511 1.00 41.55 N
ATOM 21 C2 G A 13 29.483 141.671 72.950 1.00 41.19 C
ATOM 22 N2 G A 13 28.980 140.469 73.288 1.00 40.17 N
ATOM 23 N3 G A 13 30.771 141.900 73.047 1.00 41.87 N
ATOM 24 C4 G A 13 31.091 143.146 72.653 1.00 41.50 C
ATOM 25 P G A 14 36.884 143.331 69.843 1.00 32.86 P
ATOM 26 OP1 G A 14 38.335 143.155 69.626 1.00 29.72 O
ATOM 27 OP2 G A 14 36.219 144.584 69.400 1.00 33.90 O
ATOM 28 O5' G A 14 36.140 142.085 69.206 1.00 30.37 O
TER
ATOM 1 O3' G B 506 25.160 140.434 70.066 1.00 38.79 O
ATOM 2 P A B 507 24.920 140.471 71.639 1.00 38.79 P
ATOM 3 OP1 A B 507 23.468 140.550 71.911 1.00 38.99 O
ATOM 4 OP2 A B 507 25.824 141.489 72.224 1.00 38.51 O
ATOM 5 O5' A B 507 25.315 138.992 72.032 1.00 38.14 O
ATOM 6 C5' A B 507 24.322 137.956 71.945 1.00 38.25 C
ATOM 7 C4' A B 507 24.928 136.642 72.293 1.00 37.58 C
ATOM 8 O4' A B 507 25.821 136.243 71.237 1.00 36.83 O
ATOM 9 C3' A B 507 25.765 136.709 73.554 1.00 37.55 C
ATOM 10 O3' A B 507 24.922 136.457 74.682 1.00 38.69 O
ATOM 11 C2' A B 507 26.782 135.621 73.294 1.00 37.64 C
ATOM 12 O2' A B 507 26.134 134.380 73.475 1.00 39.84 O
ATOM 13 C1' A B 507 27.034 135.810 71.796 1.00 36.90 C
ATOM 14 N9 A B 507 28.046 136.805 71.452 1.00 38.45 N
ATOM 15 C8 A B 507 27.854 138.052 70.906 1.00 39.49 C
ATOM 16 N7 A B 507 28.959 138.705 70.675 1.00 39.04 N
ATOM 17 C5 A B 507 29.948 137.842 71.109 1.00 40.38 C
ATOM 18 C6 A B 507 31.344 137.964 71.140 1.00 41.42 C
ATOM 19 N6 A B 507 31.998 139.051 70.704 1.00 39.88 N
ATOM 20 N1 A B 507 32.053 136.928 71.636 1.00 41.25 N
ATOM 21 C2 A B 507 31.388 135.854 72.068 1.00 40.69 C
ATOM 22 N3 A B 507 30.074 135.624 72.094 1.00 40.41 N
ATOM 23 C4 A B 507 29.402 136.671 71.594 1.00 39.44 C
ATOM 24 P A B 508 25.232 137.150 76.103 1.00 38.95 P
ATOM 25 OP1 A B 508 24.084 136.822 76.977 1.00 39.16 O
ATOM 26 OP2 A B 508 25.620 138.573 75.915 1.00 38.67 O
ATOM 27 O5' A B 508 26.524 136.387 76.633 1.00 39.46 O
TER
ATOM 2 P G A 13 34.865 147.892 72.606 1.00 39.68 P
ATOM 3 OP1 G A 13 36.216 148.437 72.415 1.00 41.10 O
ATOM 4 OP2 G A 13 33.775 148.271 71.668 1.00 42.50 O
ATOM 5 O5' G A 13 34.941 146.305 72.616 1.00 41.65 O
ATOM 6 C5' G A 13 35.956 145.584 73.330 1.00 40.08 C
ATOM 7 C4' G A 13 35.581 144.129 73.341 1.00 39.60 C
ATOM 8 O4' G A 13 34.270 143.987 73.958 1.00 40.68 O
ATOM 9 C3' G A 13 35.374 143.608 71.932 1.00 36.94 C
ATOM 10 O3' G A 13 36.600 143.178 71.403 1.00 33.07 O
ATOM 11 C2' G A 13 34.365 142.485 72.102 1.00 38.56 C
ATOM 12 O2' G A 13 34.926 141.260 72.483 1.00 37.84 O
ATOM 13 C1' G A 13 33.505 143.033 73.233 1.00 39.60 C
ATOM 14 N9 G A 13 32.330 143.689 72.694 1.00 40.71 N
ATOM 15 C8 G A 13 32.228 144.950 72.168 1.00 41.24 C
ATOM 16 N7 G A 13 31.008 145.266 71.852 1.00 42.60 N
ATOM 17 C5 G A 13 30.275 144.135 72.178 1.00 42.10 C
ATOM 18 C6 G A 13 28.902 143.895 72.102 1.00 42.18 C
ATOM 19 O6 G A 13 28.015 144.675 71.751 1.00 42.86 O
ATOM 20 N1 G A 13 28.582 142.602 72.511 1.00 41.55 N
ATOM 21 C2 G A 13 29.483 141.671 72.950 1.00 41.19 C
ATOM 22 N2 G A 13 28.980 140.469 73.288 1.00 40.17 N
ATOM 23 N3 G A 13 30.771 141.900 73.047 1.00 41.87 N
ATOM 24 C4 G A 13 31.091 143.146 72.653 1.00 41.50 C
ATOM 25 P G A 14 36.884 143.331 69.843 1.00 32.86 P
ATOM 26 OP1 G A 14 38.335 143.155 69.626 1.00 29.72 O
ATOM 27 OP2 G A 14 36.219 144.584 69.400 1.00 33.90 O
ATOM 28 O5' G A 14 36.140 142.085 69.206 1.00 30.37 O
TER
ATOM 1 O3' G B 506 25.160 140.434 70.066 1.00 38.79 O
ATOM 2 P A B 507 24.920 140.471 71.639 1.00 38.79 P
ATOM 3 OP1 A B 507 23.468 140.550 71.911 1.00 38.99 O
ATOM 4 OP2 A B 507 25.824 141.489 72.224 1.00 38.51 O
ATOM 5 O5' A B 507 25.315 138.992 72.032 1.00 38.14 O
ATOM 6 C5' A B 507 24.322 137.956 71.945 1.00 38.25 C
ATOM 7 C4' A B 507 24.928 136.642 72.293 1.00 37.58 C
ATOM 8 O4' A B 507 25.821 136.243 71.237 1.00 36.83 O
ATOM 9 C3' A B 507 25.765 136.709 73.554 1.00 37.55 C
ATOM 10 O3' A B 507 24.922 136.457 74.682 1.00 38.69 O
ATOM 11 C2' A B 507 26.782 135.621 73.294 1.00 37.64 C
ATOM 12 O2' A B 507 26.134 134.380 73.475 1.00 39.84 O
ATOM 13 C1' A B 507 27.034 135.810 71.796 1.00 36.90 C
ATOM 14 N9 A B 507 28.046 136.805 71.452 1.00 38.45 N
ATOM 15 C8 A B 507 27.854 138.052 70.906 1.00 39.49 C
ATOM 16 N7 A B 507 28.959 138.705 70.675 1.00 39.04 N
ATOM 17 C5 A B 507 29.948 137.842 71.109 1.00 40.38 C
ATOM 18 C6 A B 507 31.344 137.964 71.140 1.00 41.42 C
ATOM 19 N6 A B 507 31.998 139.051 70.704 1.00 39.88 N
ATOM 20 N1 A B 507 32.053 136.928 71.636 1.00 41.25 N
ATOM 21 C2 A B 507 31.388 135.854 72.068 1.00 40.69 C
ATOM 22 N3 A B 507 30.074 135.624 72.094 1.00 40.41 N
ATOM 23 C4 A B 507 29.402 136.671 71.594 1.00 39.44 C
ATOM 24 P A B 508 25.232 137.150 76.103 1.00 38.95 P
ATOM 25 OP1 A B 508 24.084 136.822 76.977 1.00 39.16 O
ATOM 26 OP2 A B 508 25.620 138.573 75.915 1.00 38.67 O
ATOM 27 O5' A B 508 26.524 136.387 76.633 1.00 39.46 O
TER
Atoms:
OP1: (36.216,148.437,72.415)
OP2: (33.775,148.271,71.668)
C3': (35.374,143.608,71.932)
C1': (33.505,143.033,73.233)
C5': (35.956,145.584,73.330)
O6: (28.015,144.675,71.751)
O4': (34.270,143.987,73.958)
C8: (32.228,144.950,72.168)
C2: (29.483,141.671,72.950)
C6: (28.902,143.895,72.102)
C5: (30.275,144.135,72.178)
C4: (31.091,143.146,72.653)
P: (34.865,147.892,72.606)
C4': (35.581,144.129,73.341)
C2': (34.365,142.485,72.102)
O2': (34.926,141.260,72.483)
N1: (28.582,142.602,72.511)
N2: (28.980,140.469,73.288)
N3: (30.771,141.900,73.047)
N7: (31.008,145.266,71.852)
N9: (32.330,143.689,72.694)
O5': (34.941,146.305,72.616)
O3': (36.600,143.178,71.403)
OP2: (33.775,148.271,71.668)
C3': (35.374,143.608,71.932)
C1': (33.505,143.033,73.233)
C5': (35.956,145.584,73.330)
O6: (28.015,144.675,71.751)
O4': (34.270,143.987,73.958)
C8: (32.228,144.950,72.168)
C2: (29.483,141.671,72.950)
C6: (28.902,143.895,72.102)
C5: (30.275,144.135,72.178)
C4: (31.091,143.146,72.653)
P: (34.865,147.892,72.606)
C4': (35.581,144.129,73.341)
C2': (34.365,142.485,72.102)
O2': (34.926,141.260,72.483)
N1: (28.582,142.602,72.511)
N2: (28.980,140.469,73.288)
N3: (30.771,141.900,73.047)
N7: (31.008,145.266,71.852)
N9: (32.330,143.689,72.694)
O5': (34.941,146.305,72.616)
O3': (36.600,143.178,71.403)
OP1: (23.468,140.550,71.911)
OP2: (25.824,141.489,72.224)
C3': (25.765,136.709,73.554)
C1': (27.034,135.810,71.796)
C5': (24.322,137.956,71.945)
O4': (25.821,136.243,71.237)
C8: (27.854,138.052,70.906)
O2': (26.134,134.380,73.475)
C6: (31.344,137.964,71.140)
C5: (29.948,137.842,71.109)
C4: (29.402,136.671,71.594)
P: (24.920,140.471,71.639)
C4': (24.928,136.642,72.293)
C2': (26.782,135.621,73.294)
C2: (31.388,135.854,72.068)
N1: (32.053,136.928,71.636)
N3: (30.074,135.624,72.094)
N6: (31.998,139.051,70.704)
N7: (28.959,138.705,70.675)
N9: (28.046,136.805,71.452)
O5': (25.315,138.992,72.032)
O3': (24.922,136.457,74.682)
OP2: (25.824,141.489,72.224)
C3': (25.765,136.709,73.554)
C1': (27.034,135.810,71.796)
C5': (24.322,137.956,71.945)
O4': (25.821,136.243,71.237)
C8: (27.854,138.052,70.906)
O2': (26.134,134.380,73.475)
C6: (31.344,137.964,71.140)
C5: (29.948,137.842,71.109)
C4: (29.402,136.671,71.594)
P: (24.920,140.471,71.639)
C4': (24.928,136.642,72.293)
C2': (26.782,135.621,73.294)
C2: (31.388,135.854,72.068)
N1: (32.053,136.928,71.636)
N3: (30.074,135.624,72.094)
N6: (31.998,139.051,70.704)
N7: (28.959,138.705,70.675)
N9: (28.046,136.805,71.452)
O5': (25.315,138.992,72.032)
O3': (24.922,136.457,74.682)
Image (generated by PyMOL):