Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A346:A281
Extra
PDB:
ATOM 1 O3' A A 345 57.049 125.089 12.813 1.00 76.99 O
ATOM 2 P G A 346 58.348 125.528 13.619 1.00 78.67 P
ATOM 3 OP1 G A 346 58.656 124.450 14.604 1.00 79.16 O
ATOM 4 OP2 G A 346 58.057 126.901 14.102 1.00 79.24 O
ATOM 5 O5' G A 346 59.488 125.552 12.502 1.00 80.63 O
ATOM 6 C5' G A 346 59.315 126.321 11.291 1.00 82.29 C
ATOM 7 C4' G A 346 58.844 125.433 10.158 1.00 83.64 C
ATOM 8 O4' G A 346 58.083 126.231 9.199 1.00 83.80 O
ATOM 9 C3' G A 346 59.904 124.684 9.342 1.00 84.13 C
ATOM 10 O3' G A 346 59.300 123.430 8.951 1.00 85.60 O
ATOM 11 C2' G A 346 60.095 125.639 8.160 1.00 83.57 C
ATOM 12 O2' G A 346 60.680 125.075 7.008 1.00 84.10 O
ATOM 13 C1' G A 346 58.645 126.067 7.907 1.00 83.61 C
ATOM 14 N9 G A 346 58.407 127.287 7.133 1.00 83.25 N
ATOM 15 C8 G A 346 59.293 128.308 6.872 1.00 83.36 C
ATOM 16 N7 G A 346 58.756 129.294 6.205 1.00 83.72 N
ATOM 17 C5 G A 346 57.443 128.896 5.997 1.00 83.85 C
ATOM 18 C6 G A 346 56.371 129.572 5.344 1.00 84.76 C
ATOM 19 O6 G A 346 56.372 130.696 4.820 1.00 85.28 O
ATOM 20 N1 G A 346 55.209 128.809 5.351 1.00 85.10 N
ATOM 21 C2 G A 346 55.091 127.560 5.920 1.00 84.68 C
ATOM 22 N2 G A 346 53.883 126.971 5.810 1.00 84.28 N
ATOM 23 N3 G A 346 56.081 126.929 6.547 1.00 83.82 N
ATOM 24 C4 G A 346 57.216 127.651 6.547 1.00 83.23 C
ATOM 25 P U A 347 60.110 122.335 8.069 1.00 86.23 P
ATOM 26 OP1 U A 347 61.488 122.116 8.607 1.00 85.08 O
ATOM 27 OP2 U A 347 59.929 122.693 6.635 1.00 86.32 O
ATOM 28 O5' U A 347 59.269 120.996 8.287 1.00 85.02 O
TER
ATOM 1 O3' G B 280 51.391 127.621 2.670 1.00 85.76 O
ATOM 2 P A B 281 51.229 128.371 4.078 1.00 87.33 P
ATOM 3 OP1 A B 281 49.968 129.166 4.093 1.00 86.85 O
ATOM 4 OP2 A B 281 52.534 129.051 4.333 1.00 86.27 O
ATOM 5 O5' A B 281 51.042 127.175 5.115 1.00 86.24 O
ATOM 6 C5' A B 281 49.795 126.988 5.808 1.00 85.15 C
ATOM 7 C4' A B 281 48.846 126.195 4.952 1.00 84.61 C
ATOM 8 O4' A B 281 49.562 125.061 4.399 1.00 84.19 O
ATOM 9 C3' A B 281 47.680 125.581 5.709 1.00 84.79 C
ATOM 10 O3' A B 281 46.588 126.470 5.912 1.00 84.99 O
ATOM 11 C2' A B 281 47.345 124.364 4.860 1.00 84.50 C
ATOM 12 O2' A B 281 46.603 124.673 3.697 1.00 84.37 O
ATOM 13 C1' A B 281 48.746 123.906 4.457 1.00 83.92 C
ATOM 14 N9 A B 281 49.346 122.977 5.415 1.00 83.26 N
ATOM 15 C8 A B 281 50.517 123.099 6.129 1.00 82.62 C
ATOM 16 N7 A B 281 50.797 122.049 6.863 1.00 82.11 N
ATOM 17 C5 A B 281 49.735 121.187 6.627 1.00 82.41 C
ATOM 18 C6 A B 281 49.441 119.896 7.086 1.00 82.57 C
ATOM 19 N6 A B 281 50.231 119.200 7.911 1.00 82.20 N
ATOM 20 N1 A B 281 48.293 119.326 6.656 1.00 82.67 N
ATOM 21 C2 A B 281 47.507 120.012 5.816 1.00 82.31 C
ATOM 22 N3 A B 281 47.679 121.222 5.309 1.00 82.01 N
ATOM 23 C4 A B 281 48.826 121.757 5.755 1.00 82.60 C
ATOM 24 P C B 282 45.672 126.303 7.222 1.00 84.61 P
ATOM 25 OP1 C B 282 44.827 127.520 7.348 1.00 84.71 O
ATOM 26 OP2 C B 282 46.571 125.910 8.346 1.00 85.07 O
ATOM 27 O5' C B 282 44.729 125.069 6.866 1.00 84.05 O
TER
ATOM 2 P G A 346 58.348 125.528 13.619 1.00 78.67 P
ATOM 3 OP1 G A 346 58.656 124.450 14.604 1.00 79.16 O
ATOM 4 OP2 G A 346 58.057 126.901 14.102 1.00 79.24 O
ATOM 5 O5' G A 346 59.488 125.552 12.502 1.00 80.63 O
ATOM 6 C5' G A 346 59.315 126.321 11.291 1.00 82.29 C
ATOM 7 C4' G A 346 58.844 125.433 10.158 1.00 83.64 C
ATOM 8 O4' G A 346 58.083 126.231 9.199 1.00 83.80 O
ATOM 9 C3' G A 346 59.904 124.684 9.342 1.00 84.13 C
ATOM 10 O3' G A 346 59.300 123.430 8.951 1.00 85.60 O
ATOM 11 C2' G A 346 60.095 125.639 8.160 1.00 83.57 C
ATOM 12 O2' G A 346 60.680 125.075 7.008 1.00 84.10 O
ATOM 13 C1' G A 346 58.645 126.067 7.907 1.00 83.61 C
ATOM 14 N9 G A 346 58.407 127.287 7.133 1.00 83.25 N
ATOM 15 C8 G A 346 59.293 128.308 6.872 1.00 83.36 C
ATOM 16 N7 G A 346 58.756 129.294 6.205 1.00 83.72 N
ATOM 17 C5 G A 346 57.443 128.896 5.997 1.00 83.85 C
ATOM 18 C6 G A 346 56.371 129.572 5.344 1.00 84.76 C
ATOM 19 O6 G A 346 56.372 130.696 4.820 1.00 85.28 O
ATOM 20 N1 G A 346 55.209 128.809 5.351 1.00 85.10 N
ATOM 21 C2 G A 346 55.091 127.560 5.920 1.00 84.68 C
ATOM 22 N2 G A 346 53.883 126.971 5.810 1.00 84.28 N
ATOM 23 N3 G A 346 56.081 126.929 6.547 1.00 83.82 N
ATOM 24 C4 G A 346 57.216 127.651 6.547 1.00 83.23 C
ATOM 25 P U A 347 60.110 122.335 8.069 1.00 86.23 P
ATOM 26 OP1 U A 347 61.488 122.116 8.607 1.00 85.08 O
ATOM 27 OP2 U A 347 59.929 122.693 6.635 1.00 86.32 O
ATOM 28 O5' U A 347 59.269 120.996 8.287 1.00 85.02 O
TER
ATOM 1 O3' G B 280 51.391 127.621 2.670 1.00 85.76 O
ATOM 2 P A B 281 51.229 128.371 4.078 1.00 87.33 P
ATOM 3 OP1 A B 281 49.968 129.166 4.093 1.00 86.85 O
ATOM 4 OP2 A B 281 52.534 129.051 4.333 1.00 86.27 O
ATOM 5 O5' A B 281 51.042 127.175 5.115 1.00 86.24 O
ATOM 6 C5' A B 281 49.795 126.988 5.808 1.00 85.15 C
ATOM 7 C4' A B 281 48.846 126.195 4.952 1.00 84.61 C
ATOM 8 O4' A B 281 49.562 125.061 4.399 1.00 84.19 O
ATOM 9 C3' A B 281 47.680 125.581 5.709 1.00 84.79 C
ATOM 10 O3' A B 281 46.588 126.470 5.912 1.00 84.99 O
ATOM 11 C2' A B 281 47.345 124.364 4.860 1.00 84.50 C
ATOM 12 O2' A B 281 46.603 124.673 3.697 1.00 84.37 O
ATOM 13 C1' A B 281 48.746 123.906 4.457 1.00 83.92 C
ATOM 14 N9 A B 281 49.346 122.977 5.415 1.00 83.26 N
ATOM 15 C8 A B 281 50.517 123.099 6.129 1.00 82.62 C
ATOM 16 N7 A B 281 50.797 122.049 6.863 1.00 82.11 N
ATOM 17 C5 A B 281 49.735 121.187 6.627 1.00 82.41 C
ATOM 18 C6 A B 281 49.441 119.896 7.086 1.00 82.57 C
ATOM 19 N6 A B 281 50.231 119.200 7.911 1.00 82.20 N
ATOM 20 N1 A B 281 48.293 119.326 6.656 1.00 82.67 N
ATOM 21 C2 A B 281 47.507 120.012 5.816 1.00 82.31 C
ATOM 22 N3 A B 281 47.679 121.222 5.309 1.00 82.01 N
ATOM 23 C4 A B 281 48.826 121.757 5.755 1.00 82.60 C
ATOM 24 P C B 282 45.672 126.303 7.222 1.00 84.61 P
ATOM 25 OP1 C B 282 44.827 127.520 7.348 1.00 84.71 O
ATOM 26 OP2 C B 282 46.571 125.910 8.346 1.00 85.07 O
ATOM 27 O5' C B 282 44.729 125.069 6.866 1.00 84.05 O
TER
Atoms:
OP1: (58.656,124.450,14.604)
OP2: (58.057,126.901,14.102)
C3': (59.904,124.684,9.342)
C1': (58.645,126.067,7.907)
C5': (59.315,126.321,11.291)
O6: (56.372,130.696,4.820)
O4': (58.083,126.231,9.199)
C8: (59.293,128.308,6.872)
C2: (55.091,127.560,5.920)
C6: (56.371,129.572,5.344)
C5: (57.443,128.896,5.997)
C4: (57.216,127.651,6.547)
P: (58.348,125.528,13.619)
C4': (58.844,125.433,10.158)
C2': (60.095,125.639,8.160)
O2': (60.680,125.075,7.008)
N1: (55.209,128.809,5.351)
N2: (53.883,126.971,5.810)
N3: (56.081,126.929,6.547)
N7: (58.756,129.294,6.205)
N9: (58.407,127.287,7.133)
O5': (59.488,125.552,12.502)
O3': (59.300,123.430,8.951)
OP2: (58.057,126.901,14.102)
C3': (59.904,124.684,9.342)
C1': (58.645,126.067,7.907)
C5': (59.315,126.321,11.291)
O6: (56.372,130.696,4.820)
O4': (58.083,126.231,9.199)
C8: (59.293,128.308,6.872)
C2: (55.091,127.560,5.920)
C6: (56.371,129.572,5.344)
C5: (57.443,128.896,5.997)
C4: (57.216,127.651,6.547)
P: (58.348,125.528,13.619)
C4': (58.844,125.433,10.158)
C2': (60.095,125.639,8.160)
O2': (60.680,125.075,7.008)
N1: (55.209,128.809,5.351)
N2: (53.883,126.971,5.810)
N3: (56.081,126.929,6.547)
N7: (58.756,129.294,6.205)
N9: (58.407,127.287,7.133)
O5': (59.488,125.552,12.502)
O3': (59.300,123.430,8.951)
OP1: (49.968,129.166,4.093)
OP2: (52.534,129.051,4.333)
C3': (47.680,125.581,5.709)
C1': (48.746,123.906,4.457)
C5': (49.795,126.988,5.808)
O4': (49.562,125.061,4.399)
C8: (50.517,123.099,6.129)
O2': (46.603,124.673,3.697)
C6: (49.441,119.896,7.086)
C5: (49.735,121.187,6.627)
C4: (48.826,121.757,5.755)
P: (51.229,128.371,4.078)
C4': (48.846,126.195,4.952)
C2': (47.345,124.364,4.860)
C2: (47.507,120.012,5.816)
N1: (48.293,119.326,6.656)
N3: (47.679,121.222,5.309)
N6: (50.231,119.200,7.911)
N7: (50.797,122.049,6.863)
N9: (49.346,122.977,5.415)
O5': (51.042,127.175,5.115)
O3': (46.588,126.470,5.912)
OP2: (52.534,129.051,4.333)
C3': (47.680,125.581,5.709)
C1': (48.746,123.906,4.457)
C5': (49.795,126.988,5.808)
O4': (49.562,125.061,4.399)
C8: (50.517,123.099,6.129)
O2': (46.603,124.673,3.697)
C6: (49.441,119.896,7.086)
C5: (49.735,121.187,6.627)
C4: (48.826,121.757,5.755)
P: (51.229,128.371,4.078)
C4': (48.846,126.195,4.952)
C2': (47.345,124.364,4.860)
C2: (47.507,120.012,5.816)
N1: (48.293,119.326,6.656)
N3: (47.679,121.222,5.309)
N6: (50.231,119.200,7.911)
N7: (50.797,122.049,6.863)
N9: (49.346,122.977,5.415)
O5': (51.042,127.175,5.115)
O3': (46.588,126.470,5.912)
Image (generated by PyMOL):