Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YI2:0257:0229
Extra
PDB:
ATOM 1 O3' U A 256 80.308 108.251 -4.486 1.00 59.81 O
ATOM 2 P G A 257 78.994 107.913 -3.624 1.00 60.40 P
ATOM 3 OP1 G A 257 78.142 106.988 -4.419 1.00 60.06 O
ATOM 4 OP2 G A 257 78.420 109.193 -3.131 1.00 60.57 O
ATOM 5 O5' G A 257 79.566 107.104 -2.381 1.00 58.61 O
ATOM 6 C5' G A 257 80.384 105.941 -2.572 1.00 57.27 C
ATOM 7 C4' G A 257 81.042 105.567 -1.270 1.00 59.40 C
ATOM 8 O4' G A 257 82.052 106.555 -0.930 1.00 58.63 O
ATOM 9 C3' G A 257 80.097 105.547 -0.080 1.00 58.79 C
ATOM 10 O3' G A 257 79.412 104.300 -0.009 1.00 60.52 O
ATOM 11 C2' G A 257 81.036 105.811 1.092 1.00 58.09 C
ATOM 12 O2' G A 257 81.741 104.654 1.514 1.00 58.54 O
ATOM 13 C1' G A 257 82.021 106.807 0.464 1.00 55.44 C
ATOM 14 N9 G A 257 81.681 108.216 0.651 1.00 50.51 N
ATOM 15 C8 G A 257 80.611 108.897 0.114 1.00 48.77 C
ATOM 16 N7 G A 257 80.588 110.158 0.450 1.00 47.14 N
ATOM 17 C5 G A 257 81.705 110.319 1.260 1.00 44.87 C
ATOM 18 C6 G A 257 82.197 111.465 1.924 1.00 43.73 C
ATOM 19 O6 G A 257 81.735 112.610 1.927 1.00 43.66 O
ATOM 20 N1 G A 257 83.349 111.182 2.643 1.00 41.45 N
ATOM 21 C2 G A 257 83.955 109.955 2.713 1.00 43.29 C
ATOM 22 N2 G A 257 85.063 109.876 3.468 1.00 43.22 N
ATOM 23 N3 G A 257 83.510 108.879 2.095 1.00 44.07 N
ATOM 24 C4 G A 257 82.388 109.131 1.394 1.00 46.18 C
ATOM 25 P U A 258 77.933 104.230 0.614 1.00 60.87 P
ATOM 26 OP1 U A 258 77.290 102.983 0.125 1.00 61.32 O
ATOM 27 OP2 U A 258 77.259 105.537 0.391 1.00 59.19 O
ATOM 28 O5' U A 258 78.216 104.052 2.170 1.00 62.00 O
TER
ATOM 1 O3' C B 228 84.057 113.591 6.094 1.00 54.08 O
ATOM 2 P A B 229 85.428 113.261 5.315 1.00 54.46 P
ATOM 3 OP1 A B 229 86.175 114.542 5.219 1.00 54.01 O
ATOM 4 OP2 A B 229 85.089 112.514 4.079 1.00 53.88 O
ATOM 5 O5' A B 229 86.241 112.305 6.295 1.00 52.27 O
ATOM 6 C5' A B 229 86.898 112.832 7.452 1.00 51.11 C
ATOM 7 C4' A B 229 87.620 111.734 8.193 1.00 52.12 C
ATOM 8 O4' A B 229 86.667 110.781 8.724 1.00 52.50 O
ATOM 9 C3' A B 229 88.513 110.847 7.351 1.00 52.67 C
ATOM 10 O3' A B 229 89.739 111.486 7.042 1.00 54.71 O
ATOM 11 C2' A B 229 88.703 109.638 8.259 1.00 51.97 C
ATOM 12 O2' A B 229 89.667 109.845 9.267 1.00 51.40 O
ATOM 13 C1' A B 229 87.320 109.532 8.908 1.00 52.24 C
ATOM 14 N9 A B 229 86.495 108.467 8.335 1.00 52.70 N
ATOM 15 C8 A B 229 85.478 108.559 7.410 1.00 52.37 C
ATOM 16 N7 A B 229 84.946 107.403 7.093 1.00 52.38 N
ATOM 17 C5 A B 229 85.657 106.487 7.859 1.00 52.47 C
ATOM 18 C6 A B 229 85.584 105.084 7.973 1.00 52.43 C
ATOM 19 N6 A B 229 84.732 104.329 7.275 1.00 53.35 N
ATOM 20 N1 A B 229 86.434 104.478 8.833 1.00 51.80 N
ATOM 21 C2 A B 229 87.303 105.235 9.516 1.00 50.93 C
ATOM 22 N3 A B 229 87.475 106.554 9.488 1.00 50.43 N
ATOM 23 C4 A B 229 86.611 107.128 8.632 1.00 51.76 C
ATOM 24 P A B 230 90.223 111.565 5.513 1.00 54.13 P
ATOM 25 OP1 A B 230 91.459 112.392 5.501 1.00 52.81 O
ATOM 26 OP2 A B 230 89.053 111.962 4.664 1.00 51.39 O
ATOM 27 O5' A B 230 90.596 110.058 5.164 1.00 51.12 O
TER
ATOM 2 P G A 257 78.994 107.913 -3.624 1.00 60.40 P
ATOM 3 OP1 G A 257 78.142 106.988 -4.419 1.00 60.06 O
ATOM 4 OP2 G A 257 78.420 109.193 -3.131 1.00 60.57 O
ATOM 5 O5' G A 257 79.566 107.104 -2.381 1.00 58.61 O
ATOM 6 C5' G A 257 80.384 105.941 -2.572 1.00 57.27 C
ATOM 7 C4' G A 257 81.042 105.567 -1.270 1.00 59.40 C
ATOM 8 O4' G A 257 82.052 106.555 -0.930 1.00 58.63 O
ATOM 9 C3' G A 257 80.097 105.547 -0.080 1.00 58.79 C
ATOM 10 O3' G A 257 79.412 104.300 -0.009 1.00 60.52 O
ATOM 11 C2' G A 257 81.036 105.811 1.092 1.00 58.09 C
ATOM 12 O2' G A 257 81.741 104.654 1.514 1.00 58.54 O
ATOM 13 C1' G A 257 82.021 106.807 0.464 1.00 55.44 C
ATOM 14 N9 G A 257 81.681 108.216 0.651 1.00 50.51 N
ATOM 15 C8 G A 257 80.611 108.897 0.114 1.00 48.77 C
ATOM 16 N7 G A 257 80.588 110.158 0.450 1.00 47.14 N
ATOM 17 C5 G A 257 81.705 110.319 1.260 1.00 44.87 C
ATOM 18 C6 G A 257 82.197 111.465 1.924 1.00 43.73 C
ATOM 19 O6 G A 257 81.735 112.610 1.927 1.00 43.66 O
ATOM 20 N1 G A 257 83.349 111.182 2.643 1.00 41.45 N
ATOM 21 C2 G A 257 83.955 109.955 2.713 1.00 43.29 C
ATOM 22 N2 G A 257 85.063 109.876 3.468 1.00 43.22 N
ATOM 23 N3 G A 257 83.510 108.879 2.095 1.00 44.07 N
ATOM 24 C4 G A 257 82.388 109.131 1.394 1.00 46.18 C
ATOM 25 P U A 258 77.933 104.230 0.614 1.00 60.87 P
ATOM 26 OP1 U A 258 77.290 102.983 0.125 1.00 61.32 O
ATOM 27 OP2 U A 258 77.259 105.537 0.391 1.00 59.19 O
ATOM 28 O5' U A 258 78.216 104.052 2.170 1.00 62.00 O
TER
ATOM 1 O3' C B 228 84.057 113.591 6.094 1.00 54.08 O
ATOM 2 P A B 229 85.428 113.261 5.315 1.00 54.46 P
ATOM 3 OP1 A B 229 86.175 114.542 5.219 1.00 54.01 O
ATOM 4 OP2 A B 229 85.089 112.514 4.079 1.00 53.88 O
ATOM 5 O5' A B 229 86.241 112.305 6.295 1.00 52.27 O
ATOM 6 C5' A B 229 86.898 112.832 7.452 1.00 51.11 C
ATOM 7 C4' A B 229 87.620 111.734 8.193 1.00 52.12 C
ATOM 8 O4' A B 229 86.667 110.781 8.724 1.00 52.50 O
ATOM 9 C3' A B 229 88.513 110.847 7.351 1.00 52.67 C
ATOM 10 O3' A B 229 89.739 111.486 7.042 1.00 54.71 O
ATOM 11 C2' A B 229 88.703 109.638 8.259 1.00 51.97 C
ATOM 12 O2' A B 229 89.667 109.845 9.267 1.00 51.40 O
ATOM 13 C1' A B 229 87.320 109.532 8.908 1.00 52.24 C
ATOM 14 N9 A B 229 86.495 108.467 8.335 1.00 52.70 N
ATOM 15 C8 A B 229 85.478 108.559 7.410 1.00 52.37 C
ATOM 16 N7 A B 229 84.946 107.403 7.093 1.00 52.38 N
ATOM 17 C5 A B 229 85.657 106.487 7.859 1.00 52.47 C
ATOM 18 C6 A B 229 85.584 105.084 7.973 1.00 52.43 C
ATOM 19 N6 A B 229 84.732 104.329 7.275 1.00 53.35 N
ATOM 20 N1 A B 229 86.434 104.478 8.833 1.00 51.80 N
ATOM 21 C2 A B 229 87.303 105.235 9.516 1.00 50.93 C
ATOM 22 N3 A B 229 87.475 106.554 9.488 1.00 50.43 N
ATOM 23 C4 A B 229 86.611 107.128 8.632 1.00 51.76 C
ATOM 24 P A B 230 90.223 111.565 5.513 1.00 54.13 P
ATOM 25 OP1 A B 230 91.459 112.392 5.501 1.00 52.81 O
ATOM 26 OP2 A B 230 89.053 111.962 4.664 1.00 51.39 O
ATOM 27 O5' A B 230 90.596 110.058 5.164 1.00 51.12 O
TER
Atoms:
OP1: (78.142,106.988,-4.419)
OP2: (78.420,109.193,-3.131)
C3': (80.097,105.547,-0.080)
C1': (82.021,106.807,0.464)
C5': (80.384,105.941,-2.572)
O6: (81.735,112.610,1.927)
O4': (82.052,106.555,-0.930)
C8: (80.611,108.897,0.114)
C2: (83.955,109.955,2.713)
C6: (82.197,111.465,1.924)
C5: (81.705,110.319,1.260)
C4: (82.388,109.131,1.394)
P: (78.994,107.913,-3.624)
C4': (81.042,105.567,-1.270)
C2': (81.036,105.811,1.092)
O2': (81.741,104.654,1.514)
N1: (83.349,111.182,2.643)
N2: (85.063,109.876,3.468)
N3: (83.510,108.879,2.095)
N7: (80.588,110.158,0.450)
N9: (81.681,108.216,0.651)
O5': (79.566,107.104,-2.381)
O3': (79.412,104.300,-0.009)
OP2: (78.420,109.193,-3.131)
C3': (80.097,105.547,-0.080)
C1': (82.021,106.807,0.464)
C5': (80.384,105.941,-2.572)
O6: (81.735,112.610,1.927)
O4': (82.052,106.555,-0.930)
C8: (80.611,108.897,0.114)
C2: (83.955,109.955,2.713)
C6: (82.197,111.465,1.924)
C5: (81.705,110.319,1.260)
C4: (82.388,109.131,1.394)
P: (78.994,107.913,-3.624)
C4': (81.042,105.567,-1.270)
C2': (81.036,105.811,1.092)
O2': (81.741,104.654,1.514)
N1: (83.349,111.182,2.643)
N2: (85.063,109.876,3.468)
N3: (83.510,108.879,2.095)
N7: (80.588,110.158,0.450)
N9: (81.681,108.216,0.651)
O5': (79.566,107.104,-2.381)
O3': (79.412,104.300,-0.009)
OP1: (86.175,114.542,5.219)
OP2: (85.089,112.514,4.079)
C3': (88.513,110.847,7.351)
C1': (87.320,109.532,8.908)
C5': (86.898,112.832,7.452)
O4': (86.667,110.781,8.724)
C8: (85.478,108.559,7.410)
O2': (89.667,109.845,9.267)
C6: (85.584,105.084,7.973)
C5: (85.657,106.487,7.859)
C4: (86.611,107.128,8.632)
P: (85.428,113.261,5.315)
C4': (87.620,111.734,8.193)
C2': (88.703,109.638,8.259)
C2: (87.303,105.235,9.516)
N1: (86.434,104.478,8.833)
N3: (87.475,106.554,9.488)
N6: (84.732,104.329,7.275)
N7: (84.946,107.403,7.093)
N9: (86.495,108.467,8.335)
O5': (86.241,112.305,6.295)
O3': (89.739,111.486,7.042)
OP2: (85.089,112.514,4.079)
C3': (88.513,110.847,7.351)
C1': (87.320,109.532,8.908)
C5': (86.898,112.832,7.452)
O4': (86.667,110.781,8.724)
C8: (85.478,108.559,7.410)
O2': (89.667,109.845,9.267)
C6: (85.584,105.084,7.973)
C5: (85.657,106.487,7.859)
C4: (86.611,107.128,8.632)
P: (85.428,113.261,5.315)
C4': (87.620,111.734,8.193)
C2': (88.703,109.638,8.259)
C2: (87.303,105.235,9.516)
N1: (86.434,104.478,8.833)
N3: (87.475,106.554,9.488)
N6: (84.732,104.329,7.275)
N7: (84.946,107.403,7.093)
N9: (86.495,108.467,8.335)
O5': (86.241,112.305,6.295)
O3': (89.739,111.486,7.042)
Image (generated by PyMOL):