Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1938:1998
Extra
PDB:
ATOM 1 O3' G A 937 34.529 -46.722 33.153 1.00 44.76 O
ATOM 2 P G A 938 33.089 -47.140 33.786 1.00 42.64 P
ATOM 3 OP1 G A 938 33.170 -46.939 35.268 1.00 42.27 O
ATOM 4 OP2 G A 938 32.767 -48.484 33.282 1.00 43.11 O
ATOM 5 O5' G A 938 32.100 -46.088 33.142 1.00 42.58 O
ATOM 6 C5' G A 938 32.350 -44.700 33.248 1.00 42.21 C
ATOM 7 C4' G A 938 31.910 -43.961 32.012 1.00 42.35 C
ATOM 8 O4' G A 938 32.715 -44.402 30.891 1.00 42.67 O
ATOM 9 C3' G A 938 30.458 -44.170 31.610 1.00 42.59 C
ATOM 10 O3' G A 938 29.940 -42.955 31.099 1.00 42.47 O
ATOM 11 C2' G A 938 30.545 -45.211 30.493 1.00 43.09 C
ATOM 12 O2' G A 938 29.530 -45.096 29.524 1.00 43.37 O
ATOM 13 C1' G A 938 31.909 -44.935 29.877 1.00 43.09 C
ATOM 14 N9 G A 938 32.584 -46.116 29.392 1.00 43.45 N
ATOM 15 C8 G A 938 32.705 -47.272 30.071 1.00 43.56 C
ATOM 16 N7 G A 938 33.426 -48.112 29.399 1.00 43.90 N
ATOM 17 C5 G A 938 33.825 -47.461 28.235 1.00 44.00 C
ATOM 18 C6 G A 938 34.647 -47.849 27.120 1.00 44.35 C
ATOM 19 O6 G A 938 35.205 -48.921 26.896 1.00 44.65 O
ATOM 20 N1 G A 938 34.816 -46.875 26.149 1.00 44.35 N
ATOM 21 C2 G A 938 34.259 -45.651 26.262 1.00 44.04 C
ATOM 22 N2 G A 938 34.533 -44.838 25.244 1.00 44.11 N
ATOM 23 N3 G A 938 33.505 -45.261 27.285 1.00 43.72 N
ATOM 24 C4 G A 938 33.309 -46.211 28.228 1.00 43.72 C
ATOM 25 P U A 939 29.344 -41.861 32.108 1.00 48.37 P
ATOM 26 OP1 U A 939 29.524 -42.383 33.473 1.00 48.16 O
ATOM 27 OP2 U A 939 27.976 -41.533 31.657 1.00 48.51 O
ATOM 28 O5' U A 939 30.284 -40.619 31.868 1.00 48.09 O
TER
ATOM 1 O3' A B 997 35.968 -46.021 21.310 1.00 45.09 O
ATOM 2 P A B 998 36.953 -46.382 22.546 1.00 48.11 P
ATOM 3 OP1 A B 998 38.215 -46.939 21.954 1.00 48.37 O
ATOM 4 OP2 A B 998 36.182 -47.213 23.525 1.00 48.07 O
ATOM 5 O5' A B 998 37.226 -44.952 23.205 1.00 47.56 O
ATOM 6 C5' A B 998 38.454 -44.276 23.030 1.00 47.40 C
ATOM 7 C4' A B 998 38.353 -43.231 21.957 1.00 47.47 C
ATOM 8 O4' A B 998 37.122 -42.475 22.110 1.00 47.30 O
ATOM 9 C3' A B 998 39.421 -42.166 21.973 1.00 47.18 C
ATOM 10 O3' A B 998 40.655 -42.630 21.466 1.00 47.39 O
ATOM 11 C2' A B 998 38.762 -41.067 21.145 1.00 47.20 C
ATOM 12 O2' A B 998 38.722 -41.439 19.775 1.00 47.70 O
ATOM 13 C1' A B 998 37.333 -41.142 21.679 1.00 47.12 C
ATOM 14 N9 A B 998 37.103 -40.246 22.827 1.00 46.61 N
ATOM 15 C8 A B 998 36.590 -40.608 24.050 1.00 46.37 C
ATOM 16 N7 A B 998 36.492 -39.630 24.893 1.00 45.94 N
ATOM 17 C5 A B 998 36.934 -38.560 24.158 1.00 45.90 C
ATOM 18 C6 A B 998 37.057 -37.235 24.471 1.00 45.55 C
ATOM 19 N6 A B 998 36.697 -36.783 25.652 1.00 45.16 N
ATOM 20 N1 A B 998 37.554 -36.394 23.567 1.00 45.62 N
ATOM 21 C2 A B 998 37.889 -36.876 22.390 1.00 46.03 C
ATOM 22 N3 A B 998 37.805 -38.126 21.951 1.00 46.40 N
ATOM 23 C4 A B 998 37.324 -38.916 22.904 1.00 46.30 C
ATOM 24 P A B 999 41.994 -42.546 22.371 1.00 46.14 P
ATOM 25 OP1 A B 999 43.103 -43.142 21.561 1.00 46.48 O
ATOM 26 OP2 A B 999 41.681 -43.147 23.724 1.00 45.90 O
ATOM 27 O5' A B 999 42.211 -40.983 22.499 1.00 45.75 O
TER
ATOM 2 P G A 938 33.089 -47.140 33.786 1.00 42.64 P
ATOM 3 OP1 G A 938 33.170 -46.939 35.268 1.00 42.27 O
ATOM 4 OP2 G A 938 32.767 -48.484 33.282 1.00 43.11 O
ATOM 5 O5' G A 938 32.100 -46.088 33.142 1.00 42.58 O
ATOM 6 C5' G A 938 32.350 -44.700 33.248 1.00 42.21 C
ATOM 7 C4' G A 938 31.910 -43.961 32.012 1.00 42.35 C
ATOM 8 O4' G A 938 32.715 -44.402 30.891 1.00 42.67 O
ATOM 9 C3' G A 938 30.458 -44.170 31.610 1.00 42.59 C
ATOM 10 O3' G A 938 29.940 -42.955 31.099 1.00 42.47 O
ATOM 11 C2' G A 938 30.545 -45.211 30.493 1.00 43.09 C
ATOM 12 O2' G A 938 29.530 -45.096 29.524 1.00 43.37 O
ATOM 13 C1' G A 938 31.909 -44.935 29.877 1.00 43.09 C
ATOM 14 N9 G A 938 32.584 -46.116 29.392 1.00 43.45 N
ATOM 15 C8 G A 938 32.705 -47.272 30.071 1.00 43.56 C
ATOM 16 N7 G A 938 33.426 -48.112 29.399 1.00 43.90 N
ATOM 17 C5 G A 938 33.825 -47.461 28.235 1.00 44.00 C
ATOM 18 C6 G A 938 34.647 -47.849 27.120 1.00 44.35 C
ATOM 19 O6 G A 938 35.205 -48.921 26.896 1.00 44.65 O
ATOM 20 N1 G A 938 34.816 -46.875 26.149 1.00 44.35 N
ATOM 21 C2 G A 938 34.259 -45.651 26.262 1.00 44.04 C
ATOM 22 N2 G A 938 34.533 -44.838 25.244 1.00 44.11 N
ATOM 23 N3 G A 938 33.505 -45.261 27.285 1.00 43.72 N
ATOM 24 C4 G A 938 33.309 -46.211 28.228 1.00 43.72 C
ATOM 25 P U A 939 29.344 -41.861 32.108 1.00 48.37 P
ATOM 26 OP1 U A 939 29.524 -42.383 33.473 1.00 48.16 O
ATOM 27 OP2 U A 939 27.976 -41.533 31.657 1.00 48.51 O
ATOM 28 O5' U A 939 30.284 -40.619 31.868 1.00 48.09 O
TER
ATOM 1 O3' A B 997 35.968 -46.021 21.310 1.00 45.09 O
ATOM 2 P A B 998 36.953 -46.382 22.546 1.00 48.11 P
ATOM 3 OP1 A B 998 38.215 -46.939 21.954 1.00 48.37 O
ATOM 4 OP2 A B 998 36.182 -47.213 23.525 1.00 48.07 O
ATOM 5 O5' A B 998 37.226 -44.952 23.205 1.00 47.56 O
ATOM 6 C5' A B 998 38.454 -44.276 23.030 1.00 47.40 C
ATOM 7 C4' A B 998 38.353 -43.231 21.957 1.00 47.47 C
ATOM 8 O4' A B 998 37.122 -42.475 22.110 1.00 47.30 O
ATOM 9 C3' A B 998 39.421 -42.166 21.973 1.00 47.18 C
ATOM 10 O3' A B 998 40.655 -42.630 21.466 1.00 47.39 O
ATOM 11 C2' A B 998 38.762 -41.067 21.145 1.00 47.20 C
ATOM 12 O2' A B 998 38.722 -41.439 19.775 1.00 47.70 O
ATOM 13 C1' A B 998 37.333 -41.142 21.679 1.00 47.12 C
ATOM 14 N9 A B 998 37.103 -40.246 22.827 1.00 46.61 N
ATOM 15 C8 A B 998 36.590 -40.608 24.050 1.00 46.37 C
ATOM 16 N7 A B 998 36.492 -39.630 24.893 1.00 45.94 N
ATOM 17 C5 A B 998 36.934 -38.560 24.158 1.00 45.90 C
ATOM 18 C6 A B 998 37.057 -37.235 24.471 1.00 45.55 C
ATOM 19 N6 A B 998 36.697 -36.783 25.652 1.00 45.16 N
ATOM 20 N1 A B 998 37.554 -36.394 23.567 1.00 45.62 N
ATOM 21 C2 A B 998 37.889 -36.876 22.390 1.00 46.03 C
ATOM 22 N3 A B 998 37.805 -38.126 21.951 1.00 46.40 N
ATOM 23 C4 A B 998 37.324 -38.916 22.904 1.00 46.30 C
ATOM 24 P A B 999 41.994 -42.546 22.371 1.00 46.14 P
ATOM 25 OP1 A B 999 43.103 -43.142 21.561 1.00 46.48 O
ATOM 26 OP2 A B 999 41.681 -43.147 23.724 1.00 45.90 O
ATOM 27 O5' A B 999 42.211 -40.983 22.499 1.00 45.75 O
TER
Atoms:
OP1: (33.170,-46.939,35.268)
OP2: (32.767,-48.484,33.282)
C3': (30.458,-44.170,31.610)
C1': (31.909,-44.935,29.877)
C5': (32.350,-44.700,33.248)
O6: (35.205,-48.921,26.896)
O4': (32.715,-44.402,30.891)
C8: (32.705,-47.272,30.071)
C2: (34.259,-45.651,26.262)
C6: (34.647,-47.849,27.120)
C5: (33.825,-47.461,28.235)
C4: (33.309,-46.211,28.228)
P: (33.089,-47.140,33.786)
C4': (31.910,-43.961,32.012)
C2': (30.545,-45.211,30.493)
O2': (29.530,-45.096,29.524)
N1: (34.816,-46.875,26.149)
N2: (34.533,-44.838,25.244)
N3: (33.505,-45.261,27.285)
N7: (33.426,-48.112,29.399)
N9: (32.584,-46.116,29.392)
O5': (32.100,-46.088,33.142)
O3': (29.940,-42.955,31.099)
OP2: (32.767,-48.484,33.282)
C3': (30.458,-44.170,31.610)
C1': (31.909,-44.935,29.877)
C5': (32.350,-44.700,33.248)
O6: (35.205,-48.921,26.896)
O4': (32.715,-44.402,30.891)
C8: (32.705,-47.272,30.071)
C2: (34.259,-45.651,26.262)
C6: (34.647,-47.849,27.120)
C5: (33.825,-47.461,28.235)
C4: (33.309,-46.211,28.228)
P: (33.089,-47.140,33.786)
C4': (31.910,-43.961,32.012)
C2': (30.545,-45.211,30.493)
O2': (29.530,-45.096,29.524)
N1: (34.816,-46.875,26.149)
N2: (34.533,-44.838,25.244)
N3: (33.505,-45.261,27.285)
N7: (33.426,-48.112,29.399)
N9: (32.584,-46.116,29.392)
O5': (32.100,-46.088,33.142)
O3': (29.940,-42.955,31.099)
OP1: (38.215,-46.939,21.954)
OP2: (36.182,-47.213,23.525)
C3': (39.421,-42.166,21.973)
C1': (37.333,-41.142,21.679)
C5': (38.454,-44.276,23.030)
O4': (37.122,-42.475,22.110)
C8: (36.590,-40.608,24.050)
O2': (38.722,-41.439,19.775)
C6: (37.057,-37.235,24.471)
C5: (36.934,-38.560,24.158)
C4: (37.324,-38.916,22.904)
P: (36.953,-46.382,22.546)
C4': (38.353,-43.231,21.957)
C2': (38.762,-41.067,21.145)
C2: (37.889,-36.876,22.390)
N1: (37.554,-36.394,23.567)
N3: (37.805,-38.126,21.951)
N6: (36.697,-36.783,25.652)
N7: (36.492,-39.630,24.893)
N9: (37.103,-40.246,22.827)
O5': (37.226,-44.952,23.205)
O3': (40.655,-42.630,21.466)
OP2: (36.182,-47.213,23.525)
C3': (39.421,-42.166,21.973)
C1': (37.333,-41.142,21.679)
C5': (38.454,-44.276,23.030)
O4': (37.122,-42.475,22.110)
C8: (36.590,-40.608,24.050)
O2': (38.722,-41.439,19.775)
C6: (37.057,-37.235,24.471)
C5: (36.934,-38.560,24.158)
C4: (37.324,-38.916,22.904)
P: (36.953,-46.382,22.546)
C4': (38.353,-43.231,21.957)
C2': (38.762,-41.067,21.145)
C2: (37.889,-36.876,22.390)
N1: (37.554,-36.394,23.567)
N3: (37.805,-38.126,21.951)
N6: (36.697,-36.783,25.652)
N7: (36.492,-39.630,24.893)
N9: (37.103,-40.246,22.827)
O5': (37.226,-44.952,23.205)
O3': (40.655,-42.630,21.466)
Image (generated by PyMOL):