Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02016:02020
Extra
PDB:
ATOM 1 O3' U A2015 42.386 108.740 109.893 1.00 29.91 O
ATOM 2 P G A2016 43.611 108.071 109.080 1.00 30.67 P
ATOM 3 OP1 G A2016 43.290 106.635 108.910 1.00 32.75 O
ATOM 4 OP2 G A2016 44.894 108.455 109.720 1.00 29.63 O
ATOM 5 O5' G A2016 43.561 108.765 107.648 1.00 29.09 O
ATOM 6 C5' G A2016 42.447 108.585 106.754 1.00 27.55 C
ATOM 7 C4' G A2016 42.549 109.566 105.605 1.00 30.25 C
ATOM 8 O4' G A2016 42.488 110.924 106.128 1.00 29.97 O
ATOM 9 C3' G A2016 43.871 109.517 104.852 1.00 30.37 C
ATOM 10 O3' G A2016 43.859 108.487 103.870 1.00 31.74 O
ATOM 11 C2' G A2016 43.979 110.920 104.266 1.00 29.82 C
ATOM 12 O2' G A2016 43.229 111.122 103.090 1.00 31.20 O
ATOM 13 C1' G A2016 43.354 111.762 105.379 1.00 30.35 C
ATOM 14 N9 G A2016 44.345 112.359 106.271 1.00 31.98 N
ATOM 15 C8 G A2016 44.913 111.803 107.395 1.00 31.37 C
ATOM 16 N7 G A2016 45.802 112.581 107.956 1.00 31.41 N
ATOM 17 C5 G A2016 45.821 113.718 107.159 1.00 30.78 C
ATOM 18 C6 G A2016 46.604 114.897 107.254 1.00 31.41 C
ATOM 19 O6 G A2016 47.489 115.172 108.080 1.00 31.92 O
ATOM 20 N1 G A2016 46.286 115.803 106.244 1.00 29.98 N
ATOM 21 C2 G A2016 45.349 115.593 105.261 1.00 28.70 C
ATOM 22 N2 G A2016 45.178 116.577 104.375 1.00 27.42 N
ATOM 23 N3 G A2016 44.632 114.498 105.153 1.00 29.27 N
ATOM 24 C4 G A2016 44.915 113.607 106.126 1.00 31.20 C
ATOM 25 P C A2017 45.124 107.500 103.720 1.00 32.75 P
ATOM 26 OP1 C A2017 44.703 106.417 102.804 1.00 29.74 O
ATOM 27 OP2 C A2017 45.652 107.147 105.072 1.00 34.09 O
ATOM 28 O5' C A2017 46.220 108.396 102.991 1.00 31.79 O
TER
ATOM 1 O3' G B2019 49.907 118.802 105.541 1.00 30.95 O
ATOM 2 P A B2020 48.347 118.781 105.199 1.00 32.07 P
ATOM 3 OP1 A B2020 47.666 118.273 106.421 1.00 30.75 O
ATOM 4 OP2 A B2020 48.135 118.084 103.905 1.00 33.33 O
ATOM 5 O5' A B2020 47.998 120.315 104.968 1.00 30.91 O
ATOM 6 C5' A B2020 47.351 121.092 105.983 1.00 30.79 C
ATOM 7 C4' A B2020 45.995 121.532 105.499 1.00 32.03 C
ATOM 8 O4' A B2020 45.202 120.352 105.168 1.00 32.65 O
ATOM 9 C3' A B2020 45.171 122.318 106.513 1.00 32.48 C
ATOM 10 O3' A B2020 44.334 123.236 105.818 1.00 36.53 O
ATOM 11 C2' A B2020 44.286 121.230 107.107 1.00 32.36 C
ATOM 12 O2' A B2020 43.094 121.715 107.678 1.00 34.90 O
ATOM 13 C1' A B2020 43.976 120.420 105.856 1.00 32.62 C
ATOM 14 N9 A B2020 43.459 119.071 106.062 1.00 32.15 N
ATOM 15 C8 A B2020 43.833 118.123 106.979 1.00 33.36 C
ATOM 16 N7 A B2020 43.152 117.008 106.891 1.00 33.67 N
ATOM 17 C5 A B2020 42.269 117.239 105.845 1.00 33.72 C
ATOM 18 C6 A B2020 41.274 116.440 105.240 1.00 34.84 C
ATOM 19 N6 A B2020 40.979 115.191 105.621 1.00 33.81 N
ATOM 20 N1 A B2020 40.584 116.975 104.211 1.00 34.73 N
ATOM 21 C2 A B2020 40.874 118.220 103.824 1.00 33.38 C
ATOM 22 N3 A B2020 41.777 119.064 104.309 1.00 34.04 N
ATOM 23 C4 A B2020 42.450 118.506 105.328 1.00 32.76 C
ATOM 24 P G B2021 44.913 124.659 105.342 1.00 40.63 P
ATOM 25 OP1 G B2021 44.970 124.618 103.848 1.00 37.95 O
ATOM 26 OP2 G B2021 46.137 124.987 106.121 1.00 37.91 O
ATOM 27 O5' G B2021 43.774 125.690 105.756 1.00 35.48 O
TER
ATOM 2 P G A2016 43.611 108.071 109.080 1.00 30.67 P
ATOM 3 OP1 G A2016 43.290 106.635 108.910 1.00 32.75 O
ATOM 4 OP2 G A2016 44.894 108.455 109.720 1.00 29.63 O
ATOM 5 O5' G A2016 43.561 108.765 107.648 1.00 29.09 O
ATOM 6 C5' G A2016 42.447 108.585 106.754 1.00 27.55 C
ATOM 7 C4' G A2016 42.549 109.566 105.605 1.00 30.25 C
ATOM 8 O4' G A2016 42.488 110.924 106.128 1.00 29.97 O
ATOM 9 C3' G A2016 43.871 109.517 104.852 1.00 30.37 C
ATOM 10 O3' G A2016 43.859 108.487 103.870 1.00 31.74 O
ATOM 11 C2' G A2016 43.979 110.920 104.266 1.00 29.82 C
ATOM 12 O2' G A2016 43.229 111.122 103.090 1.00 31.20 O
ATOM 13 C1' G A2016 43.354 111.762 105.379 1.00 30.35 C
ATOM 14 N9 G A2016 44.345 112.359 106.271 1.00 31.98 N
ATOM 15 C8 G A2016 44.913 111.803 107.395 1.00 31.37 C
ATOM 16 N7 G A2016 45.802 112.581 107.956 1.00 31.41 N
ATOM 17 C5 G A2016 45.821 113.718 107.159 1.00 30.78 C
ATOM 18 C6 G A2016 46.604 114.897 107.254 1.00 31.41 C
ATOM 19 O6 G A2016 47.489 115.172 108.080 1.00 31.92 O
ATOM 20 N1 G A2016 46.286 115.803 106.244 1.00 29.98 N
ATOM 21 C2 G A2016 45.349 115.593 105.261 1.00 28.70 C
ATOM 22 N2 G A2016 45.178 116.577 104.375 1.00 27.42 N
ATOM 23 N3 G A2016 44.632 114.498 105.153 1.00 29.27 N
ATOM 24 C4 G A2016 44.915 113.607 106.126 1.00 31.20 C
ATOM 25 P C A2017 45.124 107.500 103.720 1.00 32.75 P
ATOM 26 OP1 C A2017 44.703 106.417 102.804 1.00 29.74 O
ATOM 27 OP2 C A2017 45.652 107.147 105.072 1.00 34.09 O
ATOM 28 O5' C A2017 46.220 108.396 102.991 1.00 31.79 O
TER
ATOM 1 O3' G B2019 49.907 118.802 105.541 1.00 30.95 O
ATOM 2 P A B2020 48.347 118.781 105.199 1.00 32.07 P
ATOM 3 OP1 A B2020 47.666 118.273 106.421 1.00 30.75 O
ATOM 4 OP2 A B2020 48.135 118.084 103.905 1.00 33.33 O
ATOM 5 O5' A B2020 47.998 120.315 104.968 1.00 30.91 O
ATOM 6 C5' A B2020 47.351 121.092 105.983 1.00 30.79 C
ATOM 7 C4' A B2020 45.995 121.532 105.499 1.00 32.03 C
ATOM 8 O4' A B2020 45.202 120.352 105.168 1.00 32.65 O
ATOM 9 C3' A B2020 45.171 122.318 106.513 1.00 32.48 C
ATOM 10 O3' A B2020 44.334 123.236 105.818 1.00 36.53 O
ATOM 11 C2' A B2020 44.286 121.230 107.107 1.00 32.36 C
ATOM 12 O2' A B2020 43.094 121.715 107.678 1.00 34.90 O
ATOM 13 C1' A B2020 43.976 120.420 105.856 1.00 32.62 C
ATOM 14 N9 A B2020 43.459 119.071 106.062 1.00 32.15 N
ATOM 15 C8 A B2020 43.833 118.123 106.979 1.00 33.36 C
ATOM 16 N7 A B2020 43.152 117.008 106.891 1.00 33.67 N
ATOM 17 C5 A B2020 42.269 117.239 105.845 1.00 33.72 C
ATOM 18 C6 A B2020 41.274 116.440 105.240 1.00 34.84 C
ATOM 19 N6 A B2020 40.979 115.191 105.621 1.00 33.81 N
ATOM 20 N1 A B2020 40.584 116.975 104.211 1.00 34.73 N
ATOM 21 C2 A B2020 40.874 118.220 103.824 1.00 33.38 C
ATOM 22 N3 A B2020 41.777 119.064 104.309 1.00 34.04 N
ATOM 23 C4 A B2020 42.450 118.506 105.328 1.00 32.76 C
ATOM 24 P G B2021 44.913 124.659 105.342 1.00 40.63 P
ATOM 25 OP1 G B2021 44.970 124.618 103.848 1.00 37.95 O
ATOM 26 OP2 G B2021 46.137 124.987 106.121 1.00 37.91 O
ATOM 27 O5' G B2021 43.774 125.690 105.756 1.00 35.48 O
TER
Atoms:
OP1: (43.290,106.635,108.910)
OP2: (44.894,108.455,109.720)
C3': (43.871,109.517,104.852)
C1': (43.354,111.762,105.379)
C5': (42.447,108.585,106.754)
O6: (47.489,115.172,108.080)
O4': (42.488,110.924,106.128)
C8: (44.913,111.803,107.395)
C2: (45.349,115.593,105.261)
C6: (46.604,114.897,107.254)
C5: (45.821,113.718,107.159)
C4: (44.915,113.607,106.126)
P: (43.611,108.071,109.080)
C4': (42.549,109.566,105.605)
C2': (43.979,110.920,104.266)
O2': (43.229,111.122,103.090)
N1: (46.286,115.803,106.244)
N2: (45.178,116.577,104.375)
N3: (44.632,114.498,105.153)
N7: (45.802,112.581,107.956)
N9: (44.345,112.359,106.271)
O5': (43.561,108.765,107.648)
O3': (43.859,108.487,103.870)
OP2: (44.894,108.455,109.720)
C3': (43.871,109.517,104.852)
C1': (43.354,111.762,105.379)
C5': (42.447,108.585,106.754)
O6: (47.489,115.172,108.080)
O4': (42.488,110.924,106.128)
C8: (44.913,111.803,107.395)
C2: (45.349,115.593,105.261)
C6: (46.604,114.897,107.254)
C5: (45.821,113.718,107.159)
C4: (44.915,113.607,106.126)
P: (43.611,108.071,109.080)
C4': (42.549,109.566,105.605)
C2': (43.979,110.920,104.266)
O2': (43.229,111.122,103.090)
N1: (46.286,115.803,106.244)
N2: (45.178,116.577,104.375)
N3: (44.632,114.498,105.153)
N7: (45.802,112.581,107.956)
N9: (44.345,112.359,106.271)
O5': (43.561,108.765,107.648)
O3': (43.859,108.487,103.870)
OP1: (47.666,118.273,106.421)
OP2: (48.135,118.084,103.905)
C3': (45.171,122.318,106.513)
C1': (43.976,120.420,105.856)
C5': (47.351,121.092,105.983)
O4': (45.202,120.352,105.168)
C8: (43.833,118.123,106.979)
O2': (43.094,121.715,107.678)
C6: (41.274,116.440,105.240)
C5: (42.269,117.239,105.845)
C4: (42.450,118.506,105.328)
P: (48.347,118.781,105.199)
C4': (45.995,121.532,105.499)
C2': (44.286,121.230,107.107)
C2: (40.874,118.220,103.824)
N1: (40.584,116.975,104.211)
N3: (41.777,119.064,104.309)
N6: (40.979,115.191,105.621)
N7: (43.152,117.008,106.891)
N9: (43.459,119.071,106.062)
O5': (47.998,120.315,104.968)
O3': (44.334,123.236,105.818)
OP2: (48.135,118.084,103.905)
C3': (45.171,122.318,106.513)
C1': (43.976,120.420,105.856)
C5': (47.351,121.092,105.983)
O4': (45.202,120.352,105.168)
C8: (43.833,118.123,106.979)
O2': (43.094,121.715,107.678)
C6: (41.274,116.440,105.240)
C5: (42.269,117.239,105.845)
C4: (42.450,118.506,105.328)
P: (48.347,118.781,105.199)
C4': (45.995,121.532,105.499)
C2': (44.286,121.230,107.107)
C2: (40.874,118.220,103.824)
N1: (40.584,116.975,104.211)
N3: (41.777,119.064,104.309)
N6: (40.979,115.191,105.621)
N7: (43.152,117.008,106.891)
N9: (43.459,119.071,106.062)
O5': (47.998,120.315,104.968)
O3': (44.334,123.236,105.818)
Image (generated by PyMOL):