Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:X30:X124
Extra
PDB:
ATOM 1 O3' A A 29 -7.482 -5.918 13.288 1.00 39.07 O
ATOM 2 P G A 30 -8.711 -6.907 13.586 1.00 40.41 P
ATOM 3 OP1 G A 30 -8.784 -7.732 12.353 1.00 47.70 O
ATOM 4 OP2 G A 30 -9.880 -6.074 13.959 1.00 38.57 O
ATOM 5 O5' G A 30 -8.306 -7.759 14.880 1.00 44.77 O
ATOM 6 C5' G A 30 -7.118 -8.527 15.000 1.00 39.17 C
ATOM 7 C4' G A 30 -6.632 -8.632 16.432 1.00 36.22 C
ATOM 8 O4' G A 30 -6.709 -7.344 17.093 1.00 36.76 O
ATOM 9 C3' G A 30 -7.365 -9.564 17.391 1.00 32.34 C
ATOM 10 O3' G A 30 -7.007 -10.917 17.188 1.00 31.79 O
ATOM 11 C2' G A 30 -6.910 -9.032 18.747 1.00 30.47 C
ATOM 12 O2' G A 30 -5.583 -9.443 19.023 1.00 30.70 O
ATOM 13 C1' G A 30 -6.852 -7.532 18.481 1.00 31.97 C
ATOM 14 N9 G A 30 -8.056 -6.830 18.941 1.00 28.62 N
ATOM 15 C8 G A 30 -9.065 -6.330 18.161 1.00 31.09 C
ATOM 16 N7 G A 30 -9.987 -5.738 18.869 1.00 34.78 N
ATOM 17 C5 G A 30 -9.554 -5.857 20.186 1.00 29.33 C
ATOM 18 C6 G A 30 -10.155 -5.408 21.388 1.00 31.88 C
ATOM 19 O6 G A 30 -11.221 -4.796 21.532 1.00 29.85 O
ATOM 20 N1 G A 30 -9.385 -5.747 22.493 1.00 27.36 N
ATOM 21 C2 G A 30 -8.190 -6.418 22.456 1.00 25.59 C
ATOM 22 N2 G A 30 -7.613 -6.631 23.655 1.00 24.35 N
ATOM 23 N3 G A 30 -7.616 -6.844 21.340 1.00 25.36 N
ATOM 24 C4 G A 30 -8.354 -6.524 20.250 1.00 28.72 C
ATOM 25 P A A 31 -7.773 -12.151 17.889 1.00 34.61 P
ATOM 26 OP1 A A 31 -7.393 -13.295 17.026 1.00 35.46 O
ATOM 27 OP2 A A 31 -9.201 -11.797 18.128 1.00 31.24 O
ATOM 28 O5' A A 31 -7.016 -12.260 19.299 1.00 28.00 O
TER
ATOM 1 O3' U B 123 -12.281 -5.855 26.299 1.00 31.44 O
ATOM 2 P A B 124 -10.786 -5.262 26.384 1.00 30.48 P
ATOM 3 OP1 A B 124 -11.019 -3.941 27.020 1.00 31.54 O
ATOM 4 OP2 A B 124 -10.105 -5.330 25.064 1.00 27.44 O
ATOM 5 O5' A B 124 -10.064 -6.259 27.391 1.00 26.65 O
ATOM 6 C5' A B 124 -10.653 -6.654 28.618 1.00 28.74 C
ATOM 7 C4' A B 124 -9.769 -7.617 29.391 1.00 23.74 C
ATOM 8 O4' A B 124 -9.672 -8.924 28.748 1.00 25.57 O
ATOM 9 C3' A B 124 -8.308 -7.237 29.588 1.00 21.38 C
ATOM 10 O3' A B 124 -8.095 -6.173 30.496 1.00 21.92 O
ATOM 11 C2' A B 124 -7.734 -8.557 30.093 1.00 23.59 C
ATOM 12 O2' A B 124 -8.132 -8.847 31.419 1.00 23.63 O
ATOM 13 C1' A B 124 -8.491 -9.556 29.236 1.00 22.56 C
ATOM 14 N9 A B 124 -7.611 -10.123 28.203 1.00 29.19 N
ATOM 15 C8 A B 124 -6.517 -10.967 28.378 1.00 22.85 C
ATOM 16 N7 A B 124 -5.903 -11.344 27.293 1.00 25.58 N
ATOM 17 C5 A B 124 -6.678 -10.675 26.353 1.00 25.41 C
ATOM 18 C6 A B 124 -6.596 -10.638 24.980 1.00 28.13 C
ATOM 19 N6 A B 124 -5.683 -11.274 24.242 1.00 23.71 N
ATOM 20 N1 A B 124 -7.524 -9.876 24.389 1.00 31.87 N
ATOM 21 C2 A B 124 -8.459 -9.223 25.069 1.00 27.35 C
ATOM 22 N3 A B 124 -8.656 -9.175 26.360 1.00 26.94 N
ATOM 23 C4 A B 124 -7.708 -9.928 26.901 1.00 24.48 C
ATOM 24 P U B 125 -6.951 -5.066 30.278 1.00 23.53 P
ATOM 25 OP1 U B 125 -7.064 -4.294 31.550 1.00 24.38 O
ATOM 26 OP2 U B 125 -7.161 -4.418 28.963 1.00 26.40 O
ATOM 27 O5' U B 125 -5.579 -5.858 30.288 1.00 21.95 O
TER
ATOM 2 P G A 30 -8.711 -6.907 13.586 1.00 40.41 P
ATOM 3 OP1 G A 30 -8.784 -7.732 12.353 1.00 47.70 O
ATOM 4 OP2 G A 30 -9.880 -6.074 13.959 1.00 38.57 O
ATOM 5 O5' G A 30 -8.306 -7.759 14.880 1.00 44.77 O
ATOM 6 C5' G A 30 -7.118 -8.527 15.000 1.00 39.17 C
ATOM 7 C4' G A 30 -6.632 -8.632 16.432 1.00 36.22 C
ATOM 8 O4' G A 30 -6.709 -7.344 17.093 1.00 36.76 O
ATOM 9 C3' G A 30 -7.365 -9.564 17.391 1.00 32.34 C
ATOM 10 O3' G A 30 -7.007 -10.917 17.188 1.00 31.79 O
ATOM 11 C2' G A 30 -6.910 -9.032 18.747 1.00 30.47 C
ATOM 12 O2' G A 30 -5.583 -9.443 19.023 1.00 30.70 O
ATOM 13 C1' G A 30 -6.852 -7.532 18.481 1.00 31.97 C
ATOM 14 N9 G A 30 -8.056 -6.830 18.941 1.00 28.62 N
ATOM 15 C8 G A 30 -9.065 -6.330 18.161 1.00 31.09 C
ATOM 16 N7 G A 30 -9.987 -5.738 18.869 1.00 34.78 N
ATOM 17 C5 G A 30 -9.554 -5.857 20.186 1.00 29.33 C
ATOM 18 C6 G A 30 -10.155 -5.408 21.388 1.00 31.88 C
ATOM 19 O6 G A 30 -11.221 -4.796 21.532 1.00 29.85 O
ATOM 20 N1 G A 30 -9.385 -5.747 22.493 1.00 27.36 N
ATOM 21 C2 G A 30 -8.190 -6.418 22.456 1.00 25.59 C
ATOM 22 N2 G A 30 -7.613 -6.631 23.655 1.00 24.35 N
ATOM 23 N3 G A 30 -7.616 -6.844 21.340 1.00 25.36 N
ATOM 24 C4 G A 30 -8.354 -6.524 20.250 1.00 28.72 C
ATOM 25 P A A 31 -7.773 -12.151 17.889 1.00 34.61 P
ATOM 26 OP1 A A 31 -7.393 -13.295 17.026 1.00 35.46 O
ATOM 27 OP2 A A 31 -9.201 -11.797 18.128 1.00 31.24 O
ATOM 28 O5' A A 31 -7.016 -12.260 19.299 1.00 28.00 O
TER
ATOM 1 O3' U B 123 -12.281 -5.855 26.299 1.00 31.44 O
ATOM 2 P A B 124 -10.786 -5.262 26.384 1.00 30.48 P
ATOM 3 OP1 A B 124 -11.019 -3.941 27.020 1.00 31.54 O
ATOM 4 OP2 A B 124 -10.105 -5.330 25.064 1.00 27.44 O
ATOM 5 O5' A B 124 -10.064 -6.259 27.391 1.00 26.65 O
ATOM 6 C5' A B 124 -10.653 -6.654 28.618 1.00 28.74 C
ATOM 7 C4' A B 124 -9.769 -7.617 29.391 1.00 23.74 C
ATOM 8 O4' A B 124 -9.672 -8.924 28.748 1.00 25.57 O
ATOM 9 C3' A B 124 -8.308 -7.237 29.588 1.00 21.38 C
ATOM 10 O3' A B 124 -8.095 -6.173 30.496 1.00 21.92 O
ATOM 11 C2' A B 124 -7.734 -8.557 30.093 1.00 23.59 C
ATOM 12 O2' A B 124 -8.132 -8.847 31.419 1.00 23.63 O
ATOM 13 C1' A B 124 -8.491 -9.556 29.236 1.00 22.56 C
ATOM 14 N9 A B 124 -7.611 -10.123 28.203 1.00 29.19 N
ATOM 15 C8 A B 124 -6.517 -10.967 28.378 1.00 22.85 C
ATOM 16 N7 A B 124 -5.903 -11.344 27.293 1.00 25.58 N
ATOM 17 C5 A B 124 -6.678 -10.675 26.353 1.00 25.41 C
ATOM 18 C6 A B 124 -6.596 -10.638 24.980 1.00 28.13 C
ATOM 19 N6 A B 124 -5.683 -11.274 24.242 1.00 23.71 N
ATOM 20 N1 A B 124 -7.524 -9.876 24.389 1.00 31.87 N
ATOM 21 C2 A B 124 -8.459 -9.223 25.069 1.00 27.35 C
ATOM 22 N3 A B 124 -8.656 -9.175 26.360 1.00 26.94 N
ATOM 23 C4 A B 124 -7.708 -9.928 26.901 1.00 24.48 C
ATOM 24 P U B 125 -6.951 -5.066 30.278 1.00 23.53 P
ATOM 25 OP1 U B 125 -7.064 -4.294 31.550 1.00 24.38 O
ATOM 26 OP2 U B 125 -7.161 -4.418 28.963 1.00 26.40 O
ATOM 27 O5' U B 125 -5.579 -5.858 30.288 1.00 21.95 O
TER
Atoms:
OP1: (-8.784,-7.732,12.353)
OP2: (-9.880,-6.074,13.959)
C3': (-7.365,-9.564,17.391)
C1': (-6.852,-7.532,18.481)
C5': (-7.118,-8.527,15.000)
O6: (-11.221,-4.796,21.532)
O4': (-6.709,-7.344,17.093)
C8: (-9.065,-6.330,18.161)
C2: (-8.190,-6.418,22.456)
C6: (-10.155,-5.408,21.388)
C5: (-9.554,-5.857,20.186)
C4: (-8.354,-6.524,20.250)
P: (-8.711,-6.907,13.586)
C4': (-6.632,-8.632,16.432)
C2': (-6.910,-9.032,18.747)
O2': (-5.583,-9.443,19.023)
N1: (-9.385,-5.747,22.493)
N2: (-7.613,-6.631,23.655)
N3: (-7.616,-6.844,21.340)
N7: (-9.987,-5.738,18.869)
N9: (-8.056,-6.830,18.941)
O5': (-8.306,-7.759,14.880)
O3': (-7.007,-10.917,17.188)
OP2: (-9.880,-6.074,13.959)
C3': (-7.365,-9.564,17.391)
C1': (-6.852,-7.532,18.481)
C5': (-7.118,-8.527,15.000)
O6: (-11.221,-4.796,21.532)
O4': (-6.709,-7.344,17.093)
C8: (-9.065,-6.330,18.161)
C2: (-8.190,-6.418,22.456)
C6: (-10.155,-5.408,21.388)
C5: (-9.554,-5.857,20.186)
C4: (-8.354,-6.524,20.250)
P: (-8.711,-6.907,13.586)
C4': (-6.632,-8.632,16.432)
C2': (-6.910,-9.032,18.747)
O2': (-5.583,-9.443,19.023)
N1: (-9.385,-5.747,22.493)
N2: (-7.613,-6.631,23.655)
N3: (-7.616,-6.844,21.340)
N7: (-9.987,-5.738,18.869)
N9: (-8.056,-6.830,18.941)
O5': (-8.306,-7.759,14.880)
O3': (-7.007,-10.917,17.188)
OP1: (-11.019,-3.941,27.020)
OP2: (-10.105,-5.330,25.064)
C3': (-8.308,-7.237,29.588)
C1': (-8.491,-9.556,29.236)
C5': (-10.653,-6.654,28.618)
O4': (-9.672,-8.924,28.748)
C8: (-6.517,-10.967,28.378)
O2': (-8.132,-8.847,31.419)
C6: (-6.596,-10.638,24.980)
C5: (-6.678,-10.675,26.353)
C4: (-7.708,-9.928,26.901)
P: (-10.786,-5.262,26.384)
C4': (-9.769,-7.617,29.391)
C2': (-7.734,-8.557,30.093)
C2: (-8.459,-9.223,25.069)
N1: (-7.524,-9.876,24.389)
N3: (-8.656,-9.175,26.360)
N6: (-5.683,-11.274,24.242)
N7: (-5.903,-11.344,27.293)
N9: (-7.611,-10.123,28.203)
O5': (-10.064,-6.259,27.391)
O3': (-8.095,-6.173,30.496)
OP2: (-10.105,-5.330,25.064)
C3': (-8.308,-7.237,29.588)
C1': (-8.491,-9.556,29.236)
C5': (-10.653,-6.654,28.618)
O4': (-9.672,-8.924,28.748)
C8: (-6.517,-10.967,28.378)
O2': (-8.132,-8.847,31.419)
C6: (-6.596,-10.638,24.980)
C5: (-6.678,-10.675,26.353)
C4: (-7.708,-9.928,26.901)
P: (-10.786,-5.262,26.384)
C4': (-9.769,-7.617,29.391)
C2': (-7.734,-8.557,30.093)
C2: (-8.459,-9.223,25.069)
N1: (-7.524,-9.876,24.389)
N3: (-8.656,-9.175,26.360)
N6: (-5.683,-11.274,24.242)
N7: (-5.903,-11.344,27.293)
N9: (-7.611,-10.123,28.203)
O5': (-10.064,-6.259,27.391)
O3': (-8.095,-6.173,30.496)
Image (generated by PyMOL):