Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A470:A473
Extra
PDB:
ATOM 1 O3' U A 469 24.754 148.940 56.386 1.00 42.72 O
ATOM 2 P G A 470 24.054 148.014 55.301 1.00 44.33 P
ATOM 3 OP1 G A 470 23.182 147.070 56.027 1.00 42.87 O
ATOM 4 OP2 G A 470 25.105 147.496 54.374 1.00 42.76 O
ATOM 5 O5' G A 470 23.159 149.065 54.513 1.00 45.93 O
ATOM 6 C5' G A 470 22.035 149.673 55.150 1.00 47.90 C
ATOM 7 C4' G A 470 21.432 150.721 54.261 1.00 49.46 C
ATOM 8 O4' G A 470 22.372 151.806 54.098 1.00 49.92 O
ATOM 9 C3' G A 470 21.168 150.293 52.827 1.00 49.72 C
ATOM 10 O3' G A 470 20.019 149.485 52.676 1.00 48.77 O
ATOM 11 C2' G A 470 21.038 151.633 52.133 1.00 50.42 C
ATOM 12 O2' G A 470 19.805 152.296 52.345 1.00 52.80 O
ATOM 13 C1' G A 470 22.143 152.411 52.840 1.00 52.06 C
ATOM 14 N9 G A 470 23.349 152.345 52.029 1.00 54.30 N
ATOM 15 C8 G A 470 24.327 151.379 51.980 1.00 53.17 C
ATOM 16 N7 G A 470 25.241 151.629 51.083 1.00 53.88 N
ATOM 17 C5 G A 470 24.848 152.837 50.526 1.00 55.75 C
ATOM 18 C6 G A 470 25.437 153.621 49.512 1.00 56.71 C
ATOM 19 O6 G A 470 26.460 153.394 48.860 1.00 57.37 O
ATOM 20 N1 G A 470 24.703 154.785 49.276 1.00 58.12 N
ATOM 21 C2 G A 470 23.544 155.138 49.926 1.00 58.81 C
ATOM 22 N2 G A 470 22.988 156.300 49.599 1.00 58.87 N
ATOM 23 N3 G A 470 22.978 154.405 50.846 1.00 58.69 N
ATOM 24 C4 G A 470 23.684 153.283 51.104 1.00 56.47 C
ATOM 25 P C A 471 20.037 148.275 51.613 1.00 50.51 P
ATOM 26 OP1 C A 471 18.952 147.394 52.121 1.00 50.12 O
ATOM 27 OP2 C A 471 21.420 147.724 51.465 1.00 48.35 O
ATOM 28 O5' C A 471 19.605 148.994 50.251 1.00 51.32 O
TER
ATOM 1 O3' A B 472 22.729 156.092 45.308 1.00 49.39 O
ATOM 2 P A B 473 24.217 156.588 45.698 1.00 50.02 P
ATOM 3 OP1 A B 473 24.743 157.273 44.495 1.00 50.32 O
ATOM 4 OP2 A B 473 24.964 155.421 46.249 1.00 47.94 O
ATOM 5 O5' A B 473 23.956 157.696 46.834 1.00 50.67 O
ATOM 6 C5' A B 473 24.940 158.728 47.178 1.00 50.74 C
ATOM 7 C4' A B 473 24.353 159.766 48.142 1.00 52.23 C
ATOM 8 O4' A B 473 23.839 159.118 49.344 1.00 52.23 O
ATOM 9 C3' A B 473 25.345 160.835 48.641 1.00 53.19 C
ATOM 10 O3' A B 473 24.703 162.074 48.996 1.00 54.34 O
ATOM 11 C2' A B 473 25.766 160.261 49.993 1.00 53.97 C
ATOM 12 O2' A B 473 26.260 161.230 50.907 1.00 56.88 O
ATOM 13 C1' A B 473 24.426 159.723 50.486 1.00 53.67 C
ATOM 14 N9 A B 473 24.449 158.770 51.604 1.00 52.92 N
ATOM 15 C8 A B 473 25.173 157.611 51.767 1.00 51.64 C
ATOM 16 N7 A B 473 24.906 156.979 52.883 1.00 51.45 N
ATOM 17 C5 A B 473 23.945 157.774 53.497 1.00 51.77 C
ATOM 18 C6 A B 473 23.217 157.640 54.699 1.00 51.86 C
ATOM 19 N6 A B 473 23.313 156.594 55.514 1.00 50.93 N
ATOM 20 N1 A B 473 22.355 158.627 55.027 1.00 52.68 N
ATOM 21 C2 A B 473 22.218 159.660 54.190 1.00 52.78 C
ATOM 22 N3 A B 473 22.816 159.883 53.027 1.00 51.69 N
ATOM 23 C4 A B 473 23.676 158.890 52.734 1.00 52.29 C
ATOM 24 P A B 474 23.967 162.985 47.891 1.00 54.74 P
ATOM 25 OP1 A B 474 23.881 162.257 46.605 1.00 53.78 O
ATOM 26 OP2 A B 474 24.557 164.353 47.930 1.00 54.83 O
ATOM 27 O5' A B 474 22.499 163.109 48.479 1.00 53.08 O
TER
ATOM 2 P G A 470 24.054 148.014 55.301 1.00 44.33 P
ATOM 3 OP1 G A 470 23.182 147.070 56.027 1.00 42.87 O
ATOM 4 OP2 G A 470 25.105 147.496 54.374 1.00 42.76 O
ATOM 5 O5' G A 470 23.159 149.065 54.513 1.00 45.93 O
ATOM 6 C5' G A 470 22.035 149.673 55.150 1.00 47.90 C
ATOM 7 C4' G A 470 21.432 150.721 54.261 1.00 49.46 C
ATOM 8 O4' G A 470 22.372 151.806 54.098 1.00 49.92 O
ATOM 9 C3' G A 470 21.168 150.293 52.827 1.00 49.72 C
ATOM 10 O3' G A 470 20.019 149.485 52.676 1.00 48.77 O
ATOM 11 C2' G A 470 21.038 151.633 52.133 1.00 50.42 C
ATOM 12 O2' G A 470 19.805 152.296 52.345 1.00 52.80 O
ATOM 13 C1' G A 470 22.143 152.411 52.840 1.00 52.06 C
ATOM 14 N9 G A 470 23.349 152.345 52.029 1.00 54.30 N
ATOM 15 C8 G A 470 24.327 151.379 51.980 1.00 53.17 C
ATOM 16 N7 G A 470 25.241 151.629 51.083 1.00 53.88 N
ATOM 17 C5 G A 470 24.848 152.837 50.526 1.00 55.75 C
ATOM 18 C6 G A 470 25.437 153.621 49.512 1.00 56.71 C
ATOM 19 O6 G A 470 26.460 153.394 48.860 1.00 57.37 O
ATOM 20 N1 G A 470 24.703 154.785 49.276 1.00 58.12 N
ATOM 21 C2 G A 470 23.544 155.138 49.926 1.00 58.81 C
ATOM 22 N2 G A 470 22.988 156.300 49.599 1.00 58.87 N
ATOM 23 N3 G A 470 22.978 154.405 50.846 1.00 58.69 N
ATOM 24 C4 G A 470 23.684 153.283 51.104 1.00 56.47 C
ATOM 25 P C A 471 20.037 148.275 51.613 1.00 50.51 P
ATOM 26 OP1 C A 471 18.952 147.394 52.121 1.00 50.12 O
ATOM 27 OP2 C A 471 21.420 147.724 51.465 1.00 48.35 O
ATOM 28 O5' C A 471 19.605 148.994 50.251 1.00 51.32 O
TER
ATOM 1 O3' A B 472 22.729 156.092 45.308 1.00 49.39 O
ATOM 2 P A B 473 24.217 156.588 45.698 1.00 50.02 P
ATOM 3 OP1 A B 473 24.743 157.273 44.495 1.00 50.32 O
ATOM 4 OP2 A B 473 24.964 155.421 46.249 1.00 47.94 O
ATOM 5 O5' A B 473 23.956 157.696 46.834 1.00 50.67 O
ATOM 6 C5' A B 473 24.940 158.728 47.178 1.00 50.74 C
ATOM 7 C4' A B 473 24.353 159.766 48.142 1.00 52.23 C
ATOM 8 O4' A B 473 23.839 159.118 49.344 1.00 52.23 O
ATOM 9 C3' A B 473 25.345 160.835 48.641 1.00 53.19 C
ATOM 10 O3' A B 473 24.703 162.074 48.996 1.00 54.34 O
ATOM 11 C2' A B 473 25.766 160.261 49.993 1.00 53.97 C
ATOM 12 O2' A B 473 26.260 161.230 50.907 1.00 56.88 O
ATOM 13 C1' A B 473 24.426 159.723 50.486 1.00 53.67 C
ATOM 14 N9 A B 473 24.449 158.770 51.604 1.00 52.92 N
ATOM 15 C8 A B 473 25.173 157.611 51.767 1.00 51.64 C
ATOM 16 N7 A B 473 24.906 156.979 52.883 1.00 51.45 N
ATOM 17 C5 A B 473 23.945 157.774 53.497 1.00 51.77 C
ATOM 18 C6 A B 473 23.217 157.640 54.699 1.00 51.86 C
ATOM 19 N6 A B 473 23.313 156.594 55.514 1.00 50.93 N
ATOM 20 N1 A B 473 22.355 158.627 55.027 1.00 52.68 N
ATOM 21 C2 A B 473 22.218 159.660 54.190 1.00 52.78 C
ATOM 22 N3 A B 473 22.816 159.883 53.027 1.00 51.69 N
ATOM 23 C4 A B 473 23.676 158.890 52.734 1.00 52.29 C
ATOM 24 P A B 474 23.967 162.985 47.891 1.00 54.74 P
ATOM 25 OP1 A B 474 23.881 162.257 46.605 1.00 53.78 O
ATOM 26 OP2 A B 474 24.557 164.353 47.930 1.00 54.83 O
ATOM 27 O5' A B 474 22.499 163.109 48.479 1.00 53.08 O
TER
Atoms:
OP1: (23.182,147.070,56.027)
OP2: (25.105,147.496,54.374)
C3': (21.168,150.293,52.827)
C1': (22.143,152.411,52.840)
C5': (22.035,149.673,55.150)
O6: (26.460,153.394,48.860)
O4': (22.372,151.806,54.098)
C8: (24.327,151.379,51.980)
C2: (23.544,155.138,49.926)
C6: (25.437,153.621,49.512)
C5: (24.848,152.837,50.526)
C4: (23.684,153.283,51.104)
P: (24.054,148.014,55.301)
C4': (21.432,150.721,54.261)
C2': (21.038,151.633,52.133)
O2': (19.805,152.296,52.345)
N1: (24.703,154.785,49.276)
N2: (22.988,156.300,49.599)
N3: (22.978,154.405,50.846)
N7: (25.241,151.629,51.083)
N9: (23.349,152.345,52.029)
O5': (23.159,149.065,54.513)
O3': (20.019,149.485,52.676)
OP2: (25.105,147.496,54.374)
C3': (21.168,150.293,52.827)
C1': (22.143,152.411,52.840)
C5': (22.035,149.673,55.150)
O6: (26.460,153.394,48.860)
O4': (22.372,151.806,54.098)
C8: (24.327,151.379,51.980)
C2: (23.544,155.138,49.926)
C6: (25.437,153.621,49.512)
C5: (24.848,152.837,50.526)
C4: (23.684,153.283,51.104)
P: (24.054,148.014,55.301)
C4': (21.432,150.721,54.261)
C2': (21.038,151.633,52.133)
O2': (19.805,152.296,52.345)
N1: (24.703,154.785,49.276)
N2: (22.988,156.300,49.599)
N3: (22.978,154.405,50.846)
N7: (25.241,151.629,51.083)
N9: (23.349,152.345,52.029)
O5': (23.159,149.065,54.513)
O3': (20.019,149.485,52.676)
OP1: (24.743,157.273,44.495)
OP2: (24.964,155.421,46.249)
C3': (25.345,160.835,48.641)
C1': (24.426,159.723,50.486)
C5': (24.940,158.728,47.178)
O4': (23.839,159.118,49.344)
C8: (25.173,157.611,51.767)
O2': (26.260,161.230,50.907)
C6: (23.217,157.640,54.699)
C5: (23.945,157.774,53.497)
C4: (23.676,158.890,52.734)
P: (24.217,156.588,45.698)
C4': (24.353,159.766,48.142)
C2': (25.766,160.261,49.993)
C2: (22.218,159.660,54.190)
N1: (22.355,158.627,55.027)
N3: (22.816,159.883,53.027)
N6: (23.313,156.594,55.514)
N7: (24.906,156.979,52.883)
N9: (24.449,158.770,51.604)
O5': (23.956,157.696,46.834)
O3': (24.703,162.074,48.996)
OP2: (24.964,155.421,46.249)
C3': (25.345,160.835,48.641)
C1': (24.426,159.723,50.486)
C5': (24.940,158.728,47.178)
O4': (23.839,159.118,49.344)
C8: (25.173,157.611,51.767)
O2': (26.260,161.230,50.907)
C6: (23.217,157.640,54.699)
C5: (23.945,157.774,53.497)
C4: (23.676,158.890,52.734)
P: (24.217,156.588,45.698)
C4': (24.353,159.766,48.142)
C2': (25.766,160.261,49.993)
C2: (22.218,159.660,54.190)
N1: (22.355,158.627,55.027)
N3: (22.816,159.883,53.027)
N6: (23.313,156.594,55.514)
N7: (24.906,156.979,52.883)
N9: (24.449,158.770,51.604)
O5': (23.956,157.696,46.834)
O3': (24.703,162.074,48.996)
Image (generated by PyMOL):