Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A44:A56
Extra
PDB:
ATOM 1 O3' C A 43 23.248 0.450 15.067 1.00 97.13 O
ATOM 2 P A A 44 24.017 0.267 13.698 1.00100.49 P
ATOM 3 OP1 A A 44 25.071 -0.772 13.834 1.00 99.47 O
ATOM 4 OP2 A A 44 24.357 1.637 13.248 1.00 99.55 O
ATOM 5 O5' A A 44 22.860 -0.282 12.738 1.00 99.25 O
ATOM 6 C5' A A 44 22.432 -1.656 12.761 1.00 98.57 C
ATOM 7 C4' A A 44 21.336 -1.952 11.738 1.00 97.45 C
ATOM 8 O4' A A 44 20.200 -1.057 11.847 1.00 97.34 O
ATOM 9 C3' A A 44 21.805 -1.790 10.316 1.00 95.90 C
ATOM 10 O3' A A 44 22.318 -3.025 9.900 1.00 93.80 O
ATOM 11 C2' A A 44 20.557 -1.381 9.548 1.00 96.46 C
ATOM 12 O2' A A 44 19.855 -2.516 9.083 1.00 96.92 O
ATOM 13 C1' A A 44 19.736 -0.624 10.584 1.00 96.70 C
ATOM 14 N9 A A 44 19.815 0.838 10.641 1.00 97.43 N
ATOM 15 C8 A A 44 20.846 1.606 11.108 1.00 97.97 C
ATOM 16 N7 A A 44 20.619 2.902 11.082 1.00 97.75 N
ATOM 17 C5 A A 44 19.343 3.003 10.576 1.00 97.42 C
ATOM 18 C6 A A 44 18.514 4.107 10.285 1.00 97.19 C
ATOM 19 N6 A A 44 18.856 5.381 10.483 1.00 96.53 N
ATOM 20 N1 A A 44 17.284 3.862 9.790 1.00 97.25 N
ATOM 21 C2 A A 44 16.915 2.594 9.583 1.00 97.75 C
ATOM 22 N3 A A 44 17.607 1.474 9.807 1.00 99.13 N
ATOM 23 C4 A A 44 18.830 1.743 10.306 1.00 98.24 C
ATOM 24 P A A 45 23.256 -2.982 8.624 1.00 94.44 P
ATOM 25 OP1 A A 45 23.900 -4.321 8.466 1.00 93.88 O
ATOM 26 OP2 A A 45 23.997 -1.705 8.689 1.00 92.92 O
ATOM 27 O5' A A 45 22.260 -2.695 7.425 1.00 91.76 O
TER
ATOM 1 O3' G B 55 6.695 6.074 4.273 1.00 82.81 O
ATOM 2 P U B 56 6.329 5.896 5.830 1.00 82.12 P
ATOM 3 OP1 U B 56 4.914 5.455 5.996 1.00 78.35 O
ATOM 4 OP2 U B 56 6.849 7.074 6.584 1.00 81.26 O
ATOM 5 O5' U B 56 7.312 4.669 6.115 1.00 76.60 O
ATOM 6 C5' U B 56 7.061 3.706 7.099 1.00 73.77 C
ATOM 7 C4' U B 56 7.551 2.399 6.536 1.00 71.70 C
ATOM 8 O4' U B 56 8.904 2.488 6.040 1.00 69.75 O
ATOM 9 C3' U B 56 7.719 1.328 7.556 1.00 71.54 C
ATOM 10 O3' U B 56 6.428 0.890 8.066 1.00 72.56 O
ATOM 11 C2' U B 56 8.477 0.317 6.696 1.00 68.84 C
ATOM 12 O2' U B 56 7.603 -0.445 5.882 1.00 69.75 O
ATOM 13 C1' U B 56 9.449 1.206 5.909 1.00 65.85 C
ATOM 14 N1 U B 56 10.777 1.219 6.495 1.00 63.03 N
ATOM 15 C2 U B 56 11.439 0.028 6.547 1.00 65.54 C
ATOM 16 O2 U B 56 10.971 -1.001 6.105 1.00 69.71 O
ATOM 17 N3 U B 56 12.665 0.071 7.147 1.00 66.04 N
ATOM 18 C4 U B 56 13.295 1.178 7.683 1.00 66.14 C
ATOM 19 O4 U B 56 14.407 1.022 8.180 1.00 66.38 O
ATOM 20 C5 U B 56 12.554 2.414 7.591 1.00 63.89 C
ATOM 21 C6 U B 56 11.342 2.371 7.013 1.00 64.31 C
ATOM 22 P G B 57 6.275 0.901 9.659 1.00 72.20 P
ATOM 23 OP1 G B 57 4.985 0.321 10.069 1.00 66.15 O
ATOM 24 OP2 G B 57 6.762 2.238 10.096 1.00 70.42 O
ATOM 25 O5' G B 57 7.414 -0.131 10.074 1.00 69.70 O
TER
ATOM 2 P A A 44 24.017 0.267 13.698 1.00100.49 P
ATOM 3 OP1 A A 44 25.071 -0.772 13.834 1.00 99.47 O
ATOM 4 OP2 A A 44 24.357 1.637 13.248 1.00 99.55 O
ATOM 5 O5' A A 44 22.860 -0.282 12.738 1.00 99.25 O
ATOM 6 C5' A A 44 22.432 -1.656 12.761 1.00 98.57 C
ATOM 7 C4' A A 44 21.336 -1.952 11.738 1.00 97.45 C
ATOM 8 O4' A A 44 20.200 -1.057 11.847 1.00 97.34 O
ATOM 9 C3' A A 44 21.805 -1.790 10.316 1.00 95.90 C
ATOM 10 O3' A A 44 22.318 -3.025 9.900 1.00 93.80 O
ATOM 11 C2' A A 44 20.557 -1.381 9.548 1.00 96.46 C
ATOM 12 O2' A A 44 19.855 -2.516 9.083 1.00 96.92 O
ATOM 13 C1' A A 44 19.736 -0.624 10.584 1.00 96.70 C
ATOM 14 N9 A A 44 19.815 0.838 10.641 1.00 97.43 N
ATOM 15 C8 A A 44 20.846 1.606 11.108 1.00 97.97 C
ATOM 16 N7 A A 44 20.619 2.902 11.082 1.00 97.75 N
ATOM 17 C5 A A 44 19.343 3.003 10.576 1.00 97.42 C
ATOM 18 C6 A A 44 18.514 4.107 10.285 1.00 97.19 C
ATOM 19 N6 A A 44 18.856 5.381 10.483 1.00 96.53 N
ATOM 20 N1 A A 44 17.284 3.862 9.790 1.00 97.25 N
ATOM 21 C2 A A 44 16.915 2.594 9.583 1.00 97.75 C
ATOM 22 N3 A A 44 17.607 1.474 9.807 1.00 99.13 N
ATOM 23 C4 A A 44 18.830 1.743 10.306 1.00 98.24 C
ATOM 24 P A A 45 23.256 -2.982 8.624 1.00 94.44 P
ATOM 25 OP1 A A 45 23.900 -4.321 8.466 1.00 93.88 O
ATOM 26 OP2 A A 45 23.997 -1.705 8.689 1.00 92.92 O
ATOM 27 O5' A A 45 22.260 -2.695 7.425 1.00 91.76 O
TER
ATOM 1 O3' G B 55 6.695 6.074 4.273 1.00 82.81 O
ATOM 2 P U B 56 6.329 5.896 5.830 1.00 82.12 P
ATOM 3 OP1 U B 56 4.914 5.455 5.996 1.00 78.35 O
ATOM 4 OP2 U B 56 6.849 7.074 6.584 1.00 81.26 O
ATOM 5 O5' U B 56 7.312 4.669 6.115 1.00 76.60 O
ATOM 6 C5' U B 56 7.061 3.706 7.099 1.00 73.77 C
ATOM 7 C4' U B 56 7.551 2.399 6.536 1.00 71.70 C
ATOM 8 O4' U B 56 8.904 2.488 6.040 1.00 69.75 O
ATOM 9 C3' U B 56 7.719 1.328 7.556 1.00 71.54 C
ATOM 10 O3' U B 56 6.428 0.890 8.066 1.00 72.56 O
ATOM 11 C2' U B 56 8.477 0.317 6.696 1.00 68.84 C
ATOM 12 O2' U B 56 7.603 -0.445 5.882 1.00 69.75 O
ATOM 13 C1' U B 56 9.449 1.206 5.909 1.00 65.85 C
ATOM 14 N1 U B 56 10.777 1.219 6.495 1.00 63.03 N
ATOM 15 C2 U B 56 11.439 0.028 6.547 1.00 65.54 C
ATOM 16 O2 U B 56 10.971 -1.001 6.105 1.00 69.71 O
ATOM 17 N3 U B 56 12.665 0.071 7.147 1.00 66.04 N
ATOM 18 C4 U B 56 13.295 1.178 7.683 1.00 66.14 C
ATOM 19 O4 U B 56 14.407 1.022 8.180 1.00 66.38 O
ATOM 20 C5 U B 56 12.554 2.414 7.591 1.00 63.89 C
ATOM 21 C6 U B 56 11.342 2.371 7.013 1.00 64.31 C
ATOM 22 P G B 57 6.275 0.901 9.659 1.00 72.20 P
ATOM 23 OP1 G B 57 4.985 0.321 10.069 1.00 66.15 O
ATOM 24 OP2 G B 57 6.762 2.238 10.096 1.00 70.42 O
ATOM 25 O5' G B 57 7.414 -0.131 10.074 1.00 69.70 O
TER
Atoms:
OP1: (25.071,-0.772,13.834)
OP2: (24.357,1.637,13.248)
C3': (21.805,-1.790,10.316)
C1': (19.736,-0.624,10.584)
C5': (22.432,-1.656,12.761)
O4': (20.200,-1.057,11.847)
C8: (20.846,1.606,11.108)
O2': (19.855,-2.516,9.083)
C6: (18.514,4.107,10.285)
C5: (19.343,3.003,10.576)
C4: (18.830,1.743,10.306)
P: (24.017,0.267,13.698)
C4': (21.336,-1.952,11.738)
C2': (20.557,-1.381,9.548)
C2: (16.915,2.594,9.583)
N1: (17.284,3.862,9.790)
N3: (17.607,1.474,9.807)
N6: (18.856,5.381,10.483)
N7: (20.619,2.902,11.082)
N9: (19.815,0.838,10.641)
O5': (22.860,-0.282,12.738)
O3': (22.318,-3.025,9.900)
OP2: (24.357,1.637,13.248)
C3': (21.805,-1.790,10.316)
C1': (19.736,-0.624,10.584)
C5': (22.432,-1.656,12.761)
O4': (20.200,-1.057,11.847)
C8: (20.846,1.606,11.108)
O2': (19.855,-2.516,9.083)
C6: (18.514,4.107,10.285)
C5: (19.343,3.003,10.576)
C4: (18.830,1.743,10.306)
P: (24.017,0.267,13.698)
C4': (21.336,-1.952,11.738)
C2': (20.557,-1.381,9.548)
C2: (16.915,2.594,9.583)
N1: (17.284,3.862,9.790)
N3: (17.607,1.474,9.807)
N6: (18.856,5.381,10.483)
N7: (20.619,2.902,11.082)
N9: (19.815,0.838,10.641)
O5': (22.860,-0.282,12.738)
O3': (22.318,-3.025,9.900)
C4: (13.295,1.178,7.683)
N3: (12.665,0.071,7.147)
OP1: (4.914,5.455,5.996)
OP2: (6.849,7.074,6.584)
C2: (11.439,0.028,6.547)
C1': (9.449,1.206,5.909)
C3': (7.719,1.328,7.556)
O5': (7.312,4.669,6.115)
O4': (8.904,2.488,6.040)
C5': (7.061,3.706,7.099)
P: (6.329,5.896,5.830)
C4': (7.551,2.399,6.536)
C2': (8.477,0.317,6.696)
O2': (7.603,-0.445,5.882)
N1: (10.777,1.219,6.495)
O4: (14.407,1.022,8.180)
O2: (10.971,-1.001,6.105)
C6: (11.342,2.371,7.013)
C5: (12.554,2.414,7.591)
O3': (6.428,0.890,8.066)
N3: (12.665,0.071,7.147)
OP1: (4.914,5.455,5.996)
OP2: (6.849,7.074,6.584)
C2: (11.439,0.028,6.547)
C1': (9.449,1.206,5.909)
C3': (7.719,1.328,7.556)
O5': (7.312,4.669,6.115)
O4': (8.904,2.488,6.040)
C5': (7.061,3.706,7.099)
P: (6.329,5.896,5.830)
C4': (7.551,2.399,6.536)
C2': (8.477,0.317,6.696)
O2': (7.603,-0.445,5.882)
N1: (10.777,1.219,6.495)
O4: (14.407,1.022,8.180)
O2: (10.971,-1.001,6.105)
C6: (11.342,2.371,7.013)
C5: (12.554,2.414,7.591)
O3': (6.428,0.890,8.066)
Image (generated by PyMOL):