Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01029:0901
Extra
PDB:
ATOM 1 O3' C A1028 37.433 100.305 95.503 1.00 26.22 O
ATOM 2 P A A1029 37.142 100.727 93.986 1.00 27.32 P
ATOM 3 OP1 A A1029 36.649 102.120 94.019 1.00 24.83 O
ATOM 4 OP2 A A1029 36.308 99.670 93.371 1.00 27.12 O
ATOM 5 O5' A A1029 38.578 100.680 93.287 1.00 30.48 O
ATOM 6 C5' A A1029 39.590 101.688 93.543 1.00 28.42 C
ATOM 7 C4' A A1029 40.854 101.347 92.791 1.00 28.68 C
ATOM 8 O4' A A1029 41.321 100.037 93.206 1.00 30.04 O
ATOM 9 C3' A A1029 40.679 101.247 91.285 1.00 27.67 C
ATOM 10 O3' A A1029 40.878 102.540 90.740 1.00 28.94 O
ATOM 11 C2' A A1029 41.767 100.257 90.876 1.00 28.73 C
ATOM 12 O2' A A1029 43.049 100.827 90.739 1.00 29.82 O
ATOM 13 C1' A A1029 41.790 99.310 92.079 1.00 30.35 C
ATOM 14 N9 A A1029 40.939 98.130 91.918 1.00 31.47 N
ATOM 15 C8 A A1029 39.603 98.033 92.210 1.00 33.30 C
ATOM 16 N7 A A1029 39.095 96.855 91.964 1.00 34.12 N
ATOM 17 C5 A A1029 40.166 96.126 91.478 1.00 31.27 C
ATOM 18 C6 A A1029 40.273 94.810 91.029 1.00 32.43 C
ATOM 19 N6 A A1029 39.242 93.961 90.987 1.00 32.83 N
ATOM 20 N1 A A1029 41.483 94.387 90.609 1.00 31.93 N
ATOM 21 C2 A A1029 42.499 95.245 90.633 1.00 30.52 C
ATOM 22 N3 A A1029 42.520 96.510 91.027 1.00 31.39 N
ATOM 23 C4 A A1029 41.307 96.895 91.445 1.00 30.34 C
ATOM 24 P G A1030 40.219 102.942 89.334 1.00 29.01 P
ATOM 25 OP1 G A1030 40.917 102.192 88.258 1.00 27.27 O
ATOM 26 OP2 G A1030 40.168 104.428 89.292 1.00 27.35 O
ATOM 27 O5' G A1030 38.734 102.397 89.444 1.00 30.67 O
TER
ATOM 1 O3' A B 900 46.673 89.192 84.977 1.00 28.94 O
ATOM 2 P A B 901 47.281 89.072 86.448 1.00 27.53 P
ATOM 3 OP1 A B 901 47.868 87.715 86.557 1.00 26.52 O
ATOM 4 OP2 A B 901 46.260 89.505 87.421 1.00 26.62 O
ATOM 5 O5' A B 901 48.416 90.190 86.436 1.00 30.04 O
ATOM 6 C5' A B 901 48.869 90.833 87.646 1.00 28.68 C
ATOM 7 C4' A B 901 49.422 92.208 87.329 1.00 27.60 C
ATOM 8 O4' A B 901 48.334 93.107 86.981 1.00 28.68 O
ATOM 9 C3' A B 901 50.087 92.922 88.490 1.00 27.90 C
ATOM 10 O3' A B 901 51.426 92.461 88.648 1.00 29.02 O
ATOM 11 C2' A B 901 50.036 94.381 88.049 1.00 26.22 C
ATOM 12 O2' A B 901 51.046 94.706 87.119 1.00 26.83 O
ATOM 13 C1' A B 901 48.693 94.435 87.321 1.00 25.56 C
ATOM 14 N9 A B 901 47.601 95.058 88.068 1.00 25.51 N
ATOM 15 C8 A B 901 46.484 94.470 88.601 1.00 26.25 C
ATOM 16 N7 A B 901 45.675 95.313 89.198 1.00 26.13 N
ATOM 17 C5 A B 901 46.304 96.540 89.054 1.00 25.58 C
ATOM 18 C6 A B 901 45.953 97.839 89.458 1.00 26.83 C
ATOM 19 N6 A B 901 44.835 98.141 90.114 1.00 26.14 N
ATOM 20 N1 A B 901 46.807 98.840 89.155 1.00 30.72 N
ATOM 21 C2 A B 901 47.929 98.547 88.482 1.00 28.56 C
ATOM 22 N3 A B 901 48.361 97.375 88.043 1.00 27.03 N
ATOM 23 C4 A B 901 47.495 96.398 88.364 1.00 26.47 C
ATOM 24 P C B 902 51.824 91.570 89.926 1.00 27.44 P
ATOM 25 OP1 C B 902 50.777 91.753 90.960 1.00 29.59 O
ATOM 26 OP2 C B 902 53.247 91.855 90.264 1.00 31.77 O
ATOM 27 O5' C B 902 51.709 90.071 89.402 1.00 27.07 O
TER
ATOM 2 P A A1029 37.142 100.727 93.986 1.00 27.32 P
ATOM 3 OP1 A A1029 36.649 102.120 94.019 1.00 24.83 O
ATOM 4 OP2 A A1029 36.308 99.670 93.371 1.00 27.12 O
ATOM 5 O5' A A1029 38.578 100.680 93.287 1.00 30.48 O
ATOM 6 C5' A A1029 39.590 101.688 93.543 1.00 28.42 C
ATOM 7 C4' A A1029 40.854 101.347 92.791 1.00 28.68 C
ATOM 8 O4' A A1029 41.321 100.037 93.206 1.00 30.04 O
ATOM 9 C3' A A1029 40.679 101.247 91.285 1.00 27.67 C
ATOM 10 O3' A A1029 40.878 102.540 90.740 1.00 28.94 O
ATOM 11 C2' A A1029 41.767 100.257 90.876 1.00 28.73 C
ATOM 12 O2' A A1029 43.049 100.827 90.739 1.00 29.82 O
ATOM 13 C1' A A1029 41.790 99.310 92.079 1.00 30.35 C
ATOM 14 N9 A A1029 40.939 98.130 91.918 1.00 31.47 N
ATOM 15 C8 A A1029 39.603 98.033 92.210 1.00 33.30 C
ATOM 16 N7 A A1029 39.095 96.855 91.964 1.00 34.12 N
ATOM 17 C5 A A1029 40.166 96.126 91.478 1.00 31.27 C
ATOM 18 C6 A A1029 40.273 94.810 91.029 1.00 32.43 C
ATOM 19 N6 A A1029 39.242 93.961 90.987 1.00 32.83 N
ATOM 20 N1 A A1029 41.483 94.387 90.609 1.00 31.93 N
ATOM 21 C2 A A1029 42.499 95.245 90.633 1.00 30.52 C
ATOM 22 N3 A A1029 42.520 96.510 91.027 1.00 31.39 N
ATOM 23 C4 A A1029 41.307 96.895 91.445 1.00 30.34 C
ATOM 24 P G A1030 40.219 102.942 89.334 1.00 29.01 P
ATOM 25 OP1 G A1030 40.917 102.192 88.258 1.00 27.27 O
ATOM 26 OP2 G A1030 40.168 104.428 89.292 1.00 27.35 O
ATOM 27 O5' G A1030 38.734 102.397 89.444 1.00 30.67 O
TER
ATOM 1 O3' A B 900 46.673 89.192 84.977 1.00 28.94 O
ATOM 2 P A B 901 47.281 89.072 86.448 1.00 27.53 P
ATOM 3 OP1 A B 901 47.868 87.715 86.557 1.00 26.52 O
ATOM 4 OP2 A B 901 46.260 89.505 87.421 1.00 26.62 O
ATOM 5 O5' A B 901 48.416 90.190 86.436 1.00 30.04 O
ATOM 6 C5' A B 901 48.869 90.833 87.646 1.00 28.68 C
ATOM 7 C4' A B 901 49.422 92.208 87.329 1.00 27.60 C
ATOM 8 O4' A B 901 48.334 93.107 86.981 1.00 28.68 O
ATOM 9 C3' A B 901 50.087 92.922 88.490 1.00 27.90 C
ATOM 10 O3' A B 901 51.426 92.461 88.648 1.00 29.02 O
ATOM 11 C2' A B 901 50.036 94.381 88.049 1.00 26.22 C
ATOM 12 O2' A B 901 51.046 94.706 87.119 1.00 26.83 O
ATOM 13 C1' A B 901 48.693 94.435 87.321 1.00 25.56 C
ATOM 14 N9 A B 901 47.601 95.058 88.068 1.00 25.51 N
ATOM 15 C8 A B 901 46.484 94.470 88.601 1.00 26.25 C
ATOM 16 N7 A B 901 45.675 95.313 89.198 1.00 26.13 N
ATOM 17 C5 A B 901 46.304 96.540 89.054 1.00 25.58 C
ATOM 18 C6 A B 901 45.953 97.839 89.458 1.00 26.83 C
ATOM 19 N6 A B 901 44.835 98.141 90.114 1.00 26.14 N
ATOM 20 N1 A B 901 46.807 98.840 89.155 1.00 30.72 N
ATOM 21 C2 A B 901 47.929 98.547 88.482 1.00 28.56 C
ATOM 22 N3 A B 901 48.361 97.375 88.043 1.00 27.03 N
ATOM 23 C4 A B 901 47.495 96.398 88.364 1.00 26.47 C
ATOM 24 P C B 902 51.824 91.570 89.926 1.00 27.44 P
ATOM 25 OP1 C B 902 50.777 91.753 90.960 1.00 29.59 O
ATOM 26 OP2 C B 902 53.247 91.855 90.264 1.00 31.77 O
ATOM 27 O5' C B 902 51.709 90.071 89.402 1.00 27.07 O
TER
Atoms:
OP1: (36.649,102.120,94.019)
OP2: (36.308,99.670,93.371)
C3': (40.679,101.247,91.285)
C1': (41.790,99.310,92.079)
C5': (39.590,101.688,93.543)
O4': (41.321,100.037,93.206)
C8: (39.603,98.033,92.210)
O2': (43.049,100.827,90.739)
C6: (40.273,94.810,91.029)
C5: (40.166,96.126,91.478)
C4: (41.307,96.895,91.445)
P: (37.142,100.727,93.986)
C4': (40.854,101.347,92.791)
C2': (41.767,100.257,90.876)
C2: (42.499,95.245,90.633)
N1: (41.483,94.387,90.609)
N3: (42.520,96.510,91.027)
N6: (39.242,93.961,90.987)
N7: (39.095,96.855,91.964)
N9: (40.939,98.130,91.918)
O5': (38.578,100.680,93.287)
O3': (40.878,102.540,90.740)
OP2: (36.308,99.670,93.371)
C3': (40.679,101.247,91.285)
C1': (41.790,99.310,92.079)
C5': (39.590,101.688,93.543)
O4': (41.321,100.037,93.206)
C8: (39.603,98.033,92.210)
O2': (43.049,100.827,90.739)
C6: (40.273,94.810,91.029)
C5: (40.166,96.126,91.478)
C4: (41.307,96.895,91.445)
P: (37.142,100.727,93.986)
C4': (40.854,101.347,92.791)
C2': (41.767,100.257,90.876)
C2: (42.499,95.245,90.633)
N1: (41.483,94.387,90.609)
N3: (42.520,96.510,91.027)
N6: (39.242,93.961,90.987)
N7: (39.095,96.855,91.964)
N9: (40.939,98.130,91.918)
O5': (38.578,100.680,93.287)
O3': (40.878,102.540,90.740)
OP1: (47.868,87.715,86.557)
OP2: (46.260,89.505,87.421)
C3': (50.087,92.922,88.490)
C1': (48.693,94.435,87.321)
C5': (48.869,90.833,87.646)
O4': (48.334,93.107,86.981)
C8: (46.484,94.470,88.601)
O2': (51.046,94.706,87.119)
C6: (45.953,97.839,89.458)
C5: (46.304,96.540,89.054)
C4: (47.495,96.398,88.364)
P: (47.281,89.072,86.448)
C4': (49.422,92.208,87.329)
C2': (50.036,94.381,88.049)
C2: (47.929,98.547,88.482)
N1: (46.807,98.840,89.155)
N3: (48.361,97.375,88.043)
N6: (44.835,98.141,90.114)
N7: (45.675,95.313,89.198)
N9: (47.601,95.058,88.068)
O5': (48.416,90.190,86.436)
O3': (51.426,92.461,88.648)
OP2: (46.260,89.505,87.421)
C3': (50.087,92.922,88.490)
C1': (48.693,94.435,87.321)
C5': (48.869,90.833,87.646)
O4': (48.334,93.107,86.981)
C8: (46.484,94.470,88.601)
O2': (51.046,94.706,87.119)
C6: (45.953,97.839,89.458)
C5: (46.304,96.540,89.054)
C4: (47.495,96.398,88.364)
P: (47.281,89.072,86.448)
C4': (49.422,92.208,87.329)
C2': (50.036,94.381,88.049)
C2: (47.929,98.547,88.482)
N1: (46.807,98.840,89.155)
N3: (48.361,97.375,88.043)
N6: (44.835,98.141,90.114)
N7: (45.675,95.313,89.198)
N9: (47.601,95.058,88.068)
O5': (48.416,90.190,86.436)
O3': (51.426,92.461,88.648)
Image (generated by PyMOL):