Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1257:A2008
Extra
PDB:
ATOM 1 O3' U A1256 -54.737 -83.726 1.886 1.00 0.01 O
ATOM 2 P A A1257 -53.564 -84.126 0.874 1.00 0.01 P
ATOM 3 OP1 A A1257 -54.026 -85.255 0.075 1.00 0.01 O
ATOM 4 OP2 A A1257 -52.342 -84.276 1.650 1.00 0.01 O
ATOM 5 O5' A A1257 -53.482 -82.851 -0.036 1.00 0.01 O
ATOM 6 C5' A A1257 -54.637 -82.338 -0.654 1.00 0.01 C
ATOM 7 C4' A A1257 -54.790 -80.891 -0.377 1.00 0.01 C
ATOM 8 O4' A A1257 -54.925 -80.702 1.029 1.00 0.01 O
ATOM 9 C3' A A1257 -53.611 -80.034 -0.752 1.00 0.01 C
ATOM 10 O3' A A1257 -53.611 -79.681 -2.112 1.00 0.01 O
ATOM 11 C2' A A1257 -53.741 -78.842 0.178 1.00 0.01 C
ATOM 12 O2' A A1257 -54.627 -77.874 -0.353 1.00 0.01 O
ATOM 13 C1' A A1257 -54.376 -79.470 1.409 1.00 0.01 C
ATOM 14 N9 A A1257 -53.401 -79.707 2.480 1.00 0.01 N
ATOM 15 C8 A A1257 -52.521 -80.722 2.570 1.00 0.01 C
ATOM 16 N7 A A1257 -51.780 -80.685 3.634 1.00 0.01 N
ATOM 17 C5 A A1257 -52.214 -79.580 4.300 1.00 0.01 C
ATOM 18 C6 A A1257 -51.834 -79.012 5.508 1.00 0.01 C
ATOM 19 N6 A A1257 -50.883 -79.501 6.276 1.00 0.01 N
ATOM 20 N1 A A1257 -52.440 -77.916 5.928 1.00 0.01 N
ATOM 21 C2 A A1257 -53.378 -77.428 5.142 1.00 0.01 C
ATOM 22 N3 A A1257 -53.838 -77.878 3.987 1.00 0.01 N
ATOM 23 C4 A A1257 -53.205 -78.974 3.608 1.00 0.01 C
ATOM 24 P A A1258 -52.240 -79.406 -2.878 1.00 0.01 P
ATOM 25 OP1 A A1258 -51.603 -78.256 -2.221 1.00 0.01 O
ATOM 26 OP2 A A1258 -52.551 -79.334 -4.301 1.00 0.01 O
ATOM 27 O5' A A1258 -51.421 -80.704 -2.599 1.00 0.01 O
TER
ATOM 1 O3' A B2007 -52.686 -72.385 8.296 1.00 0.01 O
ATOM 2 P A B2008 -53.664 -73.342 9.125 1.00 0.01 P
ATOM 3 OP1 A B2008 -53.457 -73.038 10.533 1.00 0.01 O
ATOM 4 OP2 A B2008 -53.458 -74.742 8.653 1.00 0.01 O
ATOM 5 O5' A B2008 -55.066 -72.829 8.686 1.00 0.01 O
ATOM 6 C5' A B2008 -55.467 -71.540 9.038 1.00 0.01 C
ATOM 7 C4' A B2008 -56.197 -70.898 7.923 1.00 0.01 C
ATOM 8 O4' A B2008 -55.412 -71.031 6.737 1.00 0.01 O
ATOM 9 C3' A B2008 -57.534 -71.520 7.577 1.00 0.01 C
ATOM 10 O3' A B2008 -58.593 -71.022 8.377 1.00 0.01 O
ATOM 11 C2' A B2008 -57.688 -71.181 6.118 1.00 0.01 C
ATOM 12 O2' A B2008 -58.210 -69.870 5.972 1.00 0.01 O
ATOM 13 C1' A B2008 -56.238 -71.206 5.634 1.00 0.01 C
ATOM 14 N9 A B2008 -55.887 -72.479 5.011 1.00 0.01 N
ATOM 15 C8 A B2008 -55.684 -73.665 5.637 1.00 0.01 C
ATOM 16 N7 A B2008 -55.373 -74.640 4.824 1.00 0.01 N
ATOM 17 C5 A B2008 -55.356 -74.045 3.596 1.00 0.01 C
ATOM 18 C6 A B2008 -55.084 -74.549 2.346 1.00 0.01 C
ATOM 19 N6 A B2008 -54.802 -75.819 2.134 1.00 0.01 N
ATOM 20 N1 A B2008 -55.121 -73.694 1.317 1.00 0.01 N
ATOM 21 C2 A B2008 -55.423 -72.425 1.544 1.00 0.01 C
ATOM 22 N3 A B2008 -55.710 -71.824 2.691 1.00 0.01 N
ATOM 23 C4 A B2008 -55.660 -72.711 3.689 1.00 0.01 C
ATOM 24 P U B2009 -59.428 -72.007 9.311 1.00 0.01 P
ATOM 25 OP1 U B2009 -60.527 -71.245 9.904 1.00 0.01 O
ATOM 26 OP2 U B2009 -58.468 -72.671 10.197 1.00 0.01 O
ATOM 27 O5' U B2009 -59.995 -73.042 8.291 1.00 0.01 O
TER
ATOM 2 P A A1257 -53.564 -84.126 0.874 1.00 0.01 P
ATOM 3 OP1 A A1257 -54.026 -85.255 0.075 1.00 0.01 O
ATOM 4 OP2 A A1257 -52.342 -84.276 1.650 1.00 0.01 O
ATOM 5 O5' A A1257 -53.482 -82.851 -0.036 1.00 0.01 O
ATOM 6 C5' A A1257 -54.637 -82.338 -0.654 1.00 0.01 C
ATOM 7 C4' A A1257 -54.790 -80.891 -0.377 1.00 0.01 C
ATOM 8 O4' A A1257 -54.925 -80.702 1.029 1.00 0.01 O
ATOM 9 C3' A A1257 -53.611 -80.034 -0.752 1.00 0.01 C
ATOM 10 O3' A A1257 -53.611 -79.681 -2.112 1.00 0.01 O
ATOM 11 C2' A A1257 -53.741 -78.842 0.178 1.00 0.01 C
ATOM 12 O2' A A1257 -54.627 -77.874 -0.353 1.00 0.01 O
ATOM 13 C1' A A1257 -54.376 -79.470 1.409 1.00 0.01 C
ATOM 14 N9 A A1257 -53.401 -79.707 2.480 1.00 0.01 N
ATOM 15 C8 A A1257 -52.521 -80.722 2.570 1.00 0.01 C
ATOM 16 N7 A A1257 -51.780 -80.685 3.634 1.00 0.01 N
ATOM 17 C5 A A1257 -52.214 -79.580 4.300 1.00 0.01 C
ATOM 18 C6 A A1257 -51.834 -79.012 5.508 1.00 0.01 C
ATOM 19 N6 A A1257 -50.883 -79.501 6.276 1.00 0.01 N
ATOM 20 N1 A A1257 -52.440 -77.916 5.928 1.00 0.01 N
ATOM 21 C2 A A1257 -53.378 -77.428 5.142 1.00 0.01 C
ATOM 22 N3 A A1257 -53.838 -77.878 3.987 1.00 0.01 N
ATOM 23 C4 A A1257 -53.205 -78.974 3.608 1.00 0.01 C
ATOM 24 P A A1258 -52.240 -79.406 -2.878 1.00 0.01 P
ATOM 25 OP1 A A1258 -51.603 -78.256 -2.221 1.00 0.01 O
ATOM 26 OP2 A A1258 -52.551 -79.334 -4.301 1.00 0.01 O
ATOM 27 O5' A A1258 -51.421 -80.704 -2.599 1.00 0.01 O
TER
ATOM 1 O3' A B2007 -52.686 -72.385 8.296 1.00 0.01 O
ATOM 2 P A B2008 -53.664 -73.342 9.125 1.00 0.01 P
ATOM 3 OP1 A B2008 -53.457 -73.038 10.533 1.00 0.01 O
ATOM 4 OP2 A B2008 -53.458 -74.742 8.653 1.00 0.01 O
ATOM 5 O5' A B2008 -55.066 -72.829 8.686 1.00 0.01 O
ATOM 6 C5' A B2008 -55.467 -71.540 9.038 1.00 0.01 C
ATOM 7 C4' A B2008 -56.197 -70.898 7.923 1.00 0.01 C
ATOM 8 O4' A B2008 -55.412 -71.031 6.737 1.00 0.01 O
ATOM 9 C3' A B2008 -57.534 -71.520 7.577 1.00 0.01 C
ATOM 10 O3' A B2008 -58.593 -71.022 8.377 1.00 0.01 O
ATOM 11 C2' A B2008 -57.688 -71.181 6.118 1.00 0.01 C
ATOM 12 O2' A B2008 -58.210 -69.870 5.972 1.00 0.01 O
ATOM 13 C1' A B2008 -56.238 -71.206 5.634 1.00 0.01 C
ATOM 14 N9 A B2008 -55.887 -72.479 5.011 1.00 0.01 N
ATOM 15 C8 A B2008 -55.684 -73.665 5.637 1.00 0.01 C
ATOM 16 N7 A B2008 -55.373 -74.640 4.824 1.00 0.01 N
ATOM 17 C5 A B2008 -55.356 -74.045 3.596 1.00 0.01 C
ATOM 18 C6 A B2008 -55.084 -74.549 2.346 1.00 0.01 C
ATOM 19 N6 A B2008 -54.802 -75.819 2.134 1.00 0.01 N
ATOM 20 N1 A B2008 -55.121 -73.694 1.317 1.00 0.01 N
ATOM 21 C2 A B2008 -55.423 -72.425 1.544 1.00 0.01 C
ATOM 22 N3 A B2008 -55.710 -71.824 2.691 1.00 0.01 N
ATOM 23 C4 A B2008 -55.660 -72.711 3.689 1.00 0.01 C
ATOM 24 P U B2009 -59.428 -72.007 9.311 1.00 0.01 P
ATOM 25 OP1 U B2009 -60.527 -71.245 9.904 1.00 0.01 O
ATOM 26 OP2 U B2009 -58.468 -72.671 10.197 1.00 0.01 O
ATOM 27 O5' U B2009 -59.995 -73.042 8.291 1.00 0.01 O
TER
Atoms:
OP1: (-54.026,-85.255,0.075)
OP2: (-52.342,-84.276,1.650)
C3': (-53.611,-80.034,-0.752)
C1': (-54.376,-79.470,1.409)
C5': (-54.637,-82.338,-0.654)
O4': (-54.925,-80.702,1.029)
C8: (-52.521,-80.722,2.570)
O2': (-54.627,-77.874,-0.353)
C6: (-51.834,-79.012,5.508)
C5: (-52.214,-79.580,4.300)
C4: (-53.205,-78.974,3.608)
P: (-53.564,-84.126,0.874)
C4': (-54.790,-80.891,-0.377)
C2': (-53.741,-78.842,0.178)
C2: (-53.378,-77.428,5.142)
N1: (-52.440,-77.916,5.928)
N3: (-53.838,-77.878,3.987)
N6: (-50.883,-79.501,6.276)
N7: (-51.780,-80.685,3.634)
N9: (-53.401,-79.707,2.480)
O5': (-53.482,-82.851,-0.036)
O3': (-53.611,-79.681,-2.112)
OP2: (-52.342,-84.276,1.650)
C3': (-53.611,-80.034,-0.752)
C1': (-54.376,-79.470,1.409)
C5': (-54.637,-82.338,-0.654)
O4': (-54.925,-80.702,1.029)
C8: (-52.521,-80.722,2.570)
O2': (-54.627,-77.874,-0.353)
C6: (-51.834,-79.012,5.508)
C5: (-52.214,-79.580,4.300)
C4: (-53.205,-78.974,3.608)
P: (-53.564,-84.126,0.874)
C4': (-54.790,-80.891,-0.377)
C2': (-53.741,-78.842,0.178)
C2: (-53.378,-77.428,5.142)
N1: (-52.440,-77.916,5.928)
N3: (-53.838,-77.878,3.987)
N6: (-50.883,-79.501,6.276)
N7: (-51.780,-80.685,3.634)
N9: (-53.401,-79.707,2.480)
O5': (-53.482,-82.851,-0.036)
O3': (-53.611,-79.681,-2.112)
OP1: (-53.457,-73.038,10.533)
OP2: (-53.458,-74.742,8.653)
C3': (-57.534,-71.520,7.577)
C1': (-56.238,-71.206,5.634)
C5': (-55.467,-71.540,9.038)
O4': (-55.412,-71.031,6.737)
C8: (-55.684,-73.665,5.637)
O2': (-58.210,-69.870,5.972)
C6: (-55.084,-74.549,2.346)
C5: (-55.356,-74.045,3.596)
C4: (-55.660,-72.711,3.689)
P: (-53.664,-73.342,9.125)
C4': (-56.197,-70.898,7.923)
C2': (-57.688,-71.181,6.118)
C2: (-55.423,-72.425,1.544)
N1: (-55.121,-73.694,1.317)
N3: (-55.710,-71.824,2.691)
N6: (-54.802,-75.819,2.134)
N7: (-55.373,-74.640,4.824)
N9: (-55.887,-72.479,5.011)
O5': (-55.066,-72.829,8.686)
O3': (-58.593,-71.022,8.377)
OP2: (-53.458,-74.742,8.653)
C3': (-57.534,-71.520,7.577)
C1': (-56.238,-71.206,5.634)
C5': (-55.467,-71.540,9.038)
O4': (-55.412,-71.031,6.737)
C8: (-55.684,-73.665,5.637)
O2': (-58.210,-69.870,5.972)
C6: (-55.084,-74.549,2.346)
C5: (-55.356,-74.045,3.596)
C4: (-55.660,-72.711,3.689)
P: (-53.664,-73.342,9.125)
C4': (-56.197,-70.898,7.923)
C2': (-57.688,-71.181,6.118)
C2: (-55.423,-72.425,1.544)
N1: (-55.121,-73.694,1.317)
N3: (-55.710,-71.824,2.691)
N6: (-54.802,-75.819,2.134)
N7: (-55.373,-74.640,4.824)
N9: (-55.887,-72.479,5.011)
O5': (-55.066,-72.829,8.686)
O3': (-58.593,-71.022,8.377)
Image (generated by PyMOL):