Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1545:A1432
Extra
PDB:
ATOM 1 O3' A A1544 -8.379 -22.297 -6.403 1.00 1.98 O
ATOM 2 P A A1545 -8.953 -21.185 -5.389 1.00 14.63 P
ATOM 3 OP1 A A1545 -10.080 -20.520 -6.064 1.00 14.63 O
ATOM 4 OP2 A A1545 -7.808 -20.359 -4.945 1.00 14.63 O
ATOM 5 O5' A A1545 -9.491 -22.053 -4.169 1.00 14.63 O
ATOM 6 C5' A A1545 -10.390 -23.127 -4.373 1.00 14.63 C
ATOM 7 C4' A A1545 -10.429 -24.042 -3.179 1.00 14.63 C
ATOM 8 O4' A A1545 -9.147 -24.706 -3.041 1.00 14.63 O
ATOM 9 C3' A A1545 -10.638 -23.371 -1.827 1.00 14.63 C
ATOM 10 O3' A A1545 -11.988 -23.048 -1.549 1.00 14.63 O
ATOM 11 C2' A A1545 -10.065 -24.390 -0.877 1.00 14.63 C
ATOM 12 O2' A A1545 -10.981 -25.455 -0.688 1.00 14.63 O
ATOM 13 C1' A A1545 -8.858 -24.892 -1.674 1.00 14.63 C
ATOM 14 N9 A A1545 -7.637 -24.132 -1.332 1.00 15.19 N
ATOM 15 C8 A A1545 -7.109 -22.953 -1.809 1.00 15.19 C
ATOM 16 N7 A A1545 -6.003 -22.553 -1.210 1.00 15.19 N
ATOM 17 C5 A A1545 -5.800 -23.543 -0.265 1.00 15.19 C
ATOM 18 C6 A A1545 -4.826 -23.763 0.717 1.00 15.19 C
ATOM 19 N6 A A1545 -3.771 -22.999 0.980 1.00 15.19 N
ATOM 20 N1 A A1545 -4.950 -24.844 1.487 1.00 15.19 N
ATOM 21 C2 A A1545 -5.975 -25.659 1.286 1.00 15.19 C
ATOM 22 N3 A A1545 -6.940 -25.568 0.402 1.00 15.19 N
ATOM 23 C4 A A1545 -6.793 -24.486 -0.337 1.00 15.19 C
ATOM 24 P A A1546 -12.337 -21.866 -0.497 1.00 8.49 P
ATOM 25 OP1 A A1546 -13.737 -21.430 -0.772 1.00 8.49 O
ATOM 26 OP2 A A1546 -11.240 -20.873 -0.562 1.00 8.49 O
ATOM 27 O5' A A1546 -12.292 -22.592 0.897 1.00 8.49 O
TER
ATOM 1 O3' U B1431 -2.479 -27.294 6.728 1.00 0.29 O
ATOM 2 P A B1432 -2.226 -28.445 5.659 1.00 0.56 P
ATOM 3 OP1 A B1432 -1.027 -29.182 6.099 1.00 0.56 O
ATOM 4 OP2 A B1432 -2.236 -27.833 4.328 1.00 0.56 O
ATOM 5 O5' A B1432 -3.496 -29.348 5.840 1.00 0.56 O
ATOM 6 C5' A B1432 -3.712 -30.037 7.052 1.00 0.56 C
ATOM 7 C4' A B1432 -5.080 -30.634 7.073 1.00 0.56 C
ATOM 8 O4' A B1432 -6.069 -29.586 6.872 1.00 0.56 O
ATOM 9 C3' A B1432 -5.352 -31.619 5.954 1.00 0.56 C
ATOM 10 O3' A B1432 -4.843 -32.902 6.219 1.00 0.56 O
ATOM 11 C2' A B1432 -6.866 -31.558 5.784 1.00 0.56 C
ATOM 12 O2' A B1432 -7.538 -32.365 6.741 1.00 0.56 O
ATOM 13 C1' A B1432 -7.138 -30.079 6.083 1.00 0.56 C
ATOM 14 N9 A B1432 -7.209 -29.288 4.848 1.00 0.47 N
ATOM 15 C8 A B1432 -6.287 -28.472 4.261 1.00 0.47 C
ATOM 16 N7 A B1432 -6.749 -27.956 3.143 1.00 0.47 N
ATOM 17 C5 A B1432 -8.027 -28.485 2.996 1.00 0.47 C
ATOM 18 C6 A B1432 -9.040 -28.345 2.051 1.00 0.47 C
ATOM 19 N6 A B1432 -8.967 -27.599 0.980 1.00 0.47 N
ATOM 20 N1 A B1432 -10.184 -29.007 2.221 1.00 0.47 N
ATOM 21 C2 A B1432 -10.314 -29.771 3.305 1.00 0.47 C
ATOM 22 N3 A B1432 -9.451 -29.991 4.274 1.00 0.47 N
ATOM 23 C4 A B1432 -8.317 -29.310 4.045 1.00 0.47 C
ATOM 24 P U B1433 -3.911 -33.609 5.139 1.00 0.01 P
ATOM 25 OP1 U B1433 -3.830 -35.046 5.512 1.00 0.01 O
ATOM 26 OP2 U B1433 -2.667 -32.810 5.040 1.00 0.01 O
ATOM 27 O5' U B1433 -4.750 -33.453 3.825 1.00 0.01 O
TER
ATOM 2 P A A1545 -8.953 -21.185 -5.389 1.00 14.63 P
ATOM 3 OP1 A A1545 -10.080 -20.520 -6.064 1.00 14.63 O
ATOM 4 OP2 A A1545 -7.808 -20.359 -4.945 1.00 14.63 O
ATOM 5 O5' A A1545 -9.491 -22.053 -4.169 1.00 14.63 O
ATOM 6 C5' A A1545 -10.390 -23.127 -4.373 1.00 14.63 C
ATOM 7 C4' A A1545 -10.429 -24.042 -3.179 1.00 14.63 C
ATOM 8 O4' A A1545 -9.147 -24.706 -3.041 1.00 14.63 O
ATOM 9 C3' A A1545 -10.638 -23.371 -1.827 1.00 14.63 C
ATOM 10 O3' A A1545 -11.988 -23.048 -1.549 1.00 14.63 O
ATOM 11 C2' A A1545 -10.065 -24.390 -0.877 1.00 14.63 C
ATOM 12 O2' A A1545 -10.981 -25.455 -0.688 1.00 14.63 O
ATOM 13 C1' A A1545 -8.858 -24.892 -1.674 1.00 14.63 C
ATOM 14 N9 A A1545 -7.637 -24.132 -1.332 1.00 15.19 N
ATOM 15 C8 A A1545 -7.109 -22.953 -1.809 1.00 15.19 C
ATOM 16 N7 A A1545 -6.003 -22.553 -1.210 1.00 15.19 N
ATOM 17 C5 A A1545 -5.800 -23.543 -0.265 1.00 15.19 C
ATOM 18 C6 A A1545 -4.826 -23.763 0.717 1.00 15.19 C
ATOM 19 N6 A A1545 -3.771 -22.999 0.980 1.00 15.19 N
ATOM 20 N1 A A1545 -4.950 -24.844 1.487 1.00 15.19 N
ATOM 21 C2 A A1545 -5.975 -25.659 1.286 1.00 15.19 C
ATOM 22 N3 A A1545 -6.940 -25.568 0.402 1.00 15.19 N
ATOM 23 C4 A A1545 -6.793 -24.486 -0.337 1.00 15.19 C
ATOM 24 P A A1546 -12.337 -21.866 -0.497 1.00 8.49 P
ATOM 25 OP1 A A1546 -13.737 -21.430 -0.772 1.00 8.49 O
ATOM 26 OP2 A A1546 -11.240 -20.873 -0.562 1.00 8.49 O
ATOM 27 O5' A A1546 -12.292 -22.592 0.897 1.00 8.49 O
TER
ATOM 1 O3' U B1431 -2.479 -27.294 6.728 1.00 0.29 O
ATOM 2 P A B1432 -2.226 -28.445 5.659 1.00 0.56 P
ATOM 3 OP1 A B1432 -1.027 -29.182 6.099 1.00 0.56 O
ATOM 4 OP2 A B1432 -2.236 -27.833 4.328 1.00 0.56 O
ATOM 5 O5' A B1432 -3.496 -29.348 5.840 1.00 0.56 O
ATOM 6 C5' A B1432 -3.712 -30.037 7.052 1.00 0.56 C
ATOM 7 C4' A B1432 -5.080 -30.634 7.073 1.00 0.56 C
ATOM 8 O4' A B1432 -6.069 -29.586 6.872 1.00 0.56 O
ATOM 9 C3' A B1432 -5.352 -31.619 5.954 1.00 0.56 C
ATOM 10 O3' A B1432 -4.843 -32.902 6.219 1.00 0.56 O
ATOM 11 C2' A B1432 -6.866 -31.558 5.784 1.00 0.56 C
ATOM 12 O2' A B1432 -7.538 -32.365 6.741 1.00 0.56 O
ATOM 13 C1' A B1432 -7.138 -30.079 6.083 1.00 0.56 C
ATOM 14 N9 A B1432 -7.209 -29.288 4.848 1.00 0.47 N
ATOM 15 C8 A B1432 -6.287 -28.472 4.261 1.00 0.47 C
ATOM 16 N7 A B1432 -6.749 -27.956 3.143 1.00 0.47 N
ATOM 17 C5 A B1432 -8.027 -28.485 2.996 1.00 0.47 C
ATOM 18 C6 A B1432 -9.040 -28.345 2.051 1.00 0.47 C
ATOM 19 N6 A B1432 -8.967 -27.599 0.980 1.00 0.47 N
ATOM 20 N1 A B1432 -10.184 -29.007 2.221 1.00 0.47 N
ATOM 21 C2 A B1432 -10.314 -29.771 3.305 1.00 0.47 C
ATOM 22 N3 A B1432 -9.451 -29.991 4.274 1.00 0.47 N
ATOM 23 C4 A B1432 -8.317 -29.310 4.045 1.00 0.47 C
ATOM 24 P U B1433 -3.911 -33.609 5.139 1.00 0.01 P
ATOM 25 OP1 U B1433 -3.830 -35.046 5.512 1.00 0.01 O
ATOM 26 OP2 U B1433 -2.667 -32.810 5.040 1.00 0.01 O
ATOM 27 O5' U B1433 -4.750 -33.453 3.825 1.00 0.01 O
TER
Atoms:
OP1: (-10.080,-20.520,-6.064)
OP2: (-7.808,-20.359,-4.945)
C3': (-10.638,-23.371,-1.827)
C1': (-8.858,-24.892,-1.674)
C5': (-10.390,-23.127,-4.373)
O4': (-9.147,-24.706,-3.041)
C8: (-7.109,-22.953,-1.809)
O2': (-10.981,-25.455,-0.688)
C6: (-4.826,-23.763,0.717)
C5: (-5.800,-23.543,-0.265)
C4: (-6.793,-24.486,-0.337)
P: (-8.953,-21.185,-5.389)
C4': (-10.429,-24.042,-3.179)
C2': (-10.065,-24.390,-0.877)
C2: (-5.975,-25.659,1.286)
N1: (-4.950,-24.844,1.487)
N3: (-6.940,-25.568,0.402)
N6: (-3.771,-22.999,0.980)
N7: (-6.003,-22.553,-1.210)
N9: (-7.637,-24.132,-1.332)
O5': (-9.491,-22.053,-4.169)
O3': (-11.988,-23.048,-1.549)
OP2: (-7.808,-20.359,-4.945)
C3': (-10.638,-23.371,-1.827)
C1': (-8.858,-24.892,-1.674)
C5': (-10.390,-23.127,-4.373)
O4': (-9.147,-24.706,-3.041)
C8: (-7.109,-22.953,-1.809)
O2': (-10.981,-25.455,-0.688)
C6: (-4.826,-23.763,0.717)
C5: (-5.800,-23.543,-0.265)
C4: (-6.793,-24.486,-0.337)
P: (-8.953,-21.185,-5.389)
C4': (-10.429,-24.042,-3.179)
C2': (-10.065,-24.390,-0.877)
C2: (-5.975,-25.659,1.286)
N1: (-4.950,-24.844,1.487)
N3: (-6.940,-25.568,0.402)
N6: (-3.771,-22.999,0.980)
N7: (-6.003,-22.553,-1.210)
N9: (-7.637,-24.132,-1.332)
O5': (-9.491,-22.053,-4.169)
O3': (-11.988,-23.048,-1.549)
OP1: (-1.027,-29.182,6.099)
OP2: (-2.236,-27.833,4.328)
C3': (-5.352,-31.619,5.954)
C1': (-7.138,-30.079,6.083)
C5': (-3.712,-30.037,7.052)
O4': (-6.069,-29.586,6.872)
C8: (-6.287,-28.472,4.261)
O2': (-7.538,-32.365,6.741)
C6: (-9.040,-28.345,2.051)
C5: (-8.027,-28.485,2.996)
C4: (-8.317,-29.310,4.045)
P: (-2.226,-28.445,5.659)
C4': (-5.080,-30.634,7.073)
C2': (-6.866,-31.558,5.784)
C2: (-10.314,-29.771,3.305)
N1: (-10.184,-29.007,2.221)
N3: (-9.451,-29.991,4.274)
N6: (-8.967,-27.599,0.980)
N7: (-6.749,-27.956,3.143)
N9: (-7.209,-29.288,4.848)
O5': (-3.496,-29.348,5.840)
O3': (-4.843,-32.902,6.219)
OP2: (-2.236,-27.833,4.328)
C3': (-5.352,-31.619,5.954)
C1': (-7.138,-30.079,6.083)
C5': (-3.712,-30.037,7.052)
O4': (-6.069,-29.586,6.872)
C8: (-6.287,-28.472,4.261)
O2': (-7.538,-32.365,6.741)
C6: (-9.040,-28.345,2.051)
C5: (-8.027,-28.485,2.996)
C4: (-8.317,-29.310,4.045)
P: (-2.226,-28.445,5.659)
C4': (-5.080,-30.634,7.073)
C2': (-6.866,-31.558,5.784)
C2: (-10.314,-29.771,3.305)
N1: (-10.184,-29.007,2.221)
N3: (-9.451,-29.991,4.274)
N6: (-8.967,-27.599,0.980)
N7: (-6.749,-27.956,3.143)
N9: (-7.209,-29.288,4.848)
O5': (-3.496,-29.348,5.840)
O3': (-4.843,-32.902,6.219)
Image (generated by PyMOL):