Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQN:0556:0577
Extra
PDB:
ATOM 1 O3' U A 555 4.290 92.169 107.941 1.00 45.07 O
ATOM 2 P G A 556 3.759 91.656 109.372 1.00 44.53 P
ATOM 3 OP1 G A 556 4.757 92.086 110.383 1.00 47.38 O
ATOM 4 OP2 G A 556 3.402 90.221 109.264 1.00 41.12 O
ATOM 5 O5' G A 556 2.435 92.508 109.619 1.00 44.59 O
ATOM 6 C5' G A 556 2.484 93.801 110.246 1.00 46.49 C
ATOM 7 C4' G A 556 1.084 94.313 110.478 1.00 51.77 C
ATOM 8 O4' G A 556 0.398 94.450 109.195 1.00 52.25 O
ATOM 9 C3' G A 556 0.172 93.380 111.264 1.00 53.31 C
ATOM 10 O3' G A 556 0.375 93.440 112.669 1.00 55.01 O
ATOM 11 C2' G A 556 -1.207 93.858 110.837 1.00 53.34 C
ATOM 12 O2' G A 556 -1.561 95.083 111.454 1.00 53.71 O
ATOM 13 C1' G A 556 -0.974 94.092 109.343 1.00 52.03 C
ATOM 14 N9 G A 556 -1.222 92.884 108.558 1.00 48.90 N
ATOM 15 C8 G A 556 -0.306 91.921 108.214 1.00 48.40 C
ATOM 16 N7 G A 556 -0.817 90.959 107.496 1.00 48.20 N
ATOM 17 C5 G A 556 -2.153 91.303 107.361 1.00 46.76 C
ATOM 18 C6 G A 556 -3.201 90.638 106.684 1.00 46.84 C
ATOM 19 O6 G A 556 -3.151 89.586 106.046 1.00 47.05 O
ATOM 20 N1 G A 556 -4.404 91.326 106.797 1.00 44.78 N
ATOM 21 C2 G A 556 -4.576 92.502 107.478 1.00 47.03 C
ATOM 22 N2 G A 556 -5.819 93.004 107.488 1.00 44.78 N
ATOM 23 N3 G A 556 -3.599 93.140 108.111 1.00 49.30 N
ATOM 24 C4 G A 556 -2.422 92.486 108.011 1.00 48.36 C
ATOM 25 P A A 557 -0.065 92.191 113.584 1.00 57.26 P
ATOM 26 OP1 A A 557 0.529 92.412 114.927 1.00 58.21 O
ATOM 27 OP2 A A 557 0.184 90.907 112.874 1.00 53.81 O
ATOM 28 O5' A A 557 -1.640 92.378 113.697 1.00 58.73 O
TER
ATOM 1 O3' G B 576 -7.817 88.623 106.762 1.00 66.24 O
ATOM 2 P U B 577 -8.083 89.687 105.579 1.00 66.81 P
ATOM 3 OP1 U B 577 -8.588 88.974 104.371 1.00 66.46 O
ATOM 4 OP2 U B 577 -6.894 90.567 105.465 1.00 68.19 O
ATOM 5 O5' U B 577 -9.246 90.604 106.164 1.00 66.52 O
ATOM 6 C5' U B 577 -10.515 90.046 106.579 1.00 64.87 C
ATOM 7 C4' U B 577 -11.047 90.802 107.778 1.00 64.56 C
ATOM 8 O4' U B 577 -10.377 90.372 108.993 1.00 64.10 O
ATOM 9 C3' U B 577 -10.808 92.299 107.731 1.00 63.99 C
ATOM 10 O3' U B 577 -11.781 92.949 106.928 1.00 65.10 O
ATOM 11 C2' U B 577 -10.864 92.698 109.200 1.00 63.75 C
ATOM 12 O2' U B 577 -12.178 92.844 109.687 1.00 63.68 O
ATOM 13 C1' U B 577 -10.222 91.480 109.874 1.00 63.63 C
ATOM 14 N1 U B 577 -8.795 91.618 110.233 1.00 62.68 N
ATOM 15 C2 U B 577 -8.433 92.628 111.121 1.00 62.35 C
ATOM 16 O2 U B 577 -9.231 93.423 111.598 1.00 62.41 O
ATOM 17 N3 U B 577 -7.095 92.676 111.428 1.00 62.39 N
ATOM 18 C4 U B 577 -6.097 91.849 110.952 1.00 63.22 C
ATOM 19 O4 U B 577 -4.935 92.026 111.327 1.00 63.30 O
ATOM 20 C5 U B 577 -6.542 90.839 110.041 1.00 62.37 C
ATOM 21 C6 U B 577 -7.838 90.759 109.719 1.00 63.13 C
ATOM 22 P A B 578 -11.370 94.254 106.090 1.00 67.53 P
ATOM 23 OP1 A B 578 -12.540 94.711 105.292 1.00 69.26 O
ATOM 24 OP2 A B 578 -10.081 93.972 105.407 1.00 69.29 O
ATOM 25 O5' A B 578 -11.108 95.350 107.208 1.00 64.53 O
TER
ATOM 2 P G A 556 3.759 91.656 109.372 1.00 44.53 P
ATOM 3 OP1 G A 556 4.757 92.086 110.383 1.00 47.38 O
ATOM 4 OP2 G A 556 3.402 90.221 109.264 1.00 41.12 O
ATOM 5 O5' G A 556 2.435 92.508 109.619 1.00 44.59 O
ATOM 6 C5' G A 556 2.484 93.801 110.246 1.00 46.49 C
ATOM 7 C4' G A 556 1.084 94.313 110.478 1.00 51.77 C
ATOM 8 O4' G A 556 0.398 94.450 109.195 1.00 52.25 O
ATOM 9 C3' G A 556 0.172 93.380 111.264 1.00 53.31 C
ATOM 10 O3' G A 556 0.375 93.440 112.669 1.00 55.01 O
ATOM 11 C2' G A 556 -1.207 93.858 110.837 1.00 53.34 C
ATOM 12 O2' G A 556 -1.561 95.083 111.454 1.00 53.71 O
ATOM 13 C1' G A 556 -0.974 94.092 109.343 1.00 52.03 C
ATOM 14 N9 G A 556 -1.222 92.884 108.558 1.00 48.90 N
ATOM 15 C8 G A 556 -0.306 91.921 108.214 1.00 48.40 C
ATOM 16 N7 G A 556 -0.817 90.959 107.496 1.00 48.20 N
ATOM 17 C5 G A 556 -2.153 91.303 107.361 1.00 46.76 C
ATOM 18 C6 G A 556 -3.201 90.638 106.684 1.00 46.84 C
ATOM 19 O6 G A 556 -3.151 89.586 106.046 1.00 47.05 O
ATOM 20 N1 G A 556 -4.404 91.326 106.797 1.00 44.78 N
ATOM 21 C2 G A 556 -4.576 92.502 107.478 1.00 47.03 C
ATOM 22 N2 G A 556 -5.819 93.004 107.488 1.00 44.78 N
ATOM 23 N3 G A 556 -3.599 93.140 108.111 1.00 49.30 N
ATOM 24 C4 G A 556 -2.422 92.486 108.011 1.00 48.36 C
ATOM 25 P A A 557 -0.065 92.191 113.584 1.00 57.26 P
ATOM 26 OP1 A A 557 0.529 92.412 114.927 1.00 58.21 O
ATOM 27 OP2 A A 557 0.184 90.907 112.874 1.00 53.81 O
ATOM 28 O5' A A 557 -1.640 92.378 113.697 1.00 58.73 O
TER
ATOM 1 O3' G B 576 -7.817 88.623 106.762 1.00 66.24 O
ATOM 2 P U B 577 -8.083 89.687 105.579 1.00 66.81 P
ATOM 3 OP1 U B 577 -8.588 88.974 104.371 1.00 66.46 O
ATOM 4 OP2 U B 577 -6.894 90.567 105.465 1.00 68.19 O
ATOM 5 O5' U B 577 -9.246 90.604 106.164 1.00 66.52 O
ATOM 6 C5' U B 577 -10.515 90.046 106.579 1.00 64.87 C
ATOM 7 C4' U B 577 -11.047 90.802 107.778 1.00 64.56 C
ATOM 8 O4' U B 577 -10.377 90.372 108.993 1.00 64.10 O
ATOM 9 C3' U B 577 -10.808 92.299 107.731 1.00 63.99 C
ATOM 10 O3' U B 577 -11.781 92.949 106.928 1.00 65.10 O
ATOM 11 C2' U B 577 -10.864 92.698 109.200 1.00 63.75 C
ATOM 12 O2' U B 577 -12.178 92.844 109.687 1.00 63.68 O
ATOM 13 C1' U B 577 -10.222 91.480 109.874 1.00 63.63 C
ATOM 14 N1 U B 577 -8.795 91.618 110.233 1.00 62.68 N
ATOM 15 C2 U B 577 -8.433 92.628 111.121 1.00 62.35 C
ATOM 16 O2 U B 577 -9.231 93.423 111.598 1.00 62.41 O
ATOM 17 N3 U B 577 -7.095 92.676 111.428 1.00 62.39 N
ATOM 18 C4 U B 577 -6.097 91.849 110.952 1.00 63.22 C
ATOM 19 O4 U B 577 -4.935 92.026 111.327 1.00 63.30 O
ATOM 20 C5 U B 577 -6.542 90.839 110.041 1.00 62.37 C
ATOM 21 C6 U B 577 -7.838 90.759 109.719 1.00 63.13 C
ATOM 22 P A B 578 -11.370 94.254 106.090 1.00 67.53 P
ATOM 23 OP1 A B 578 -12.540 94.711 105.292 1.00 69.26 O
ATOM 24 OP2 A B 578 -10.081 93.972 105.407 1.00 69.29 O
ATOM 25 O5' A B 578 -11.108 95.350 107.208 1.00 64.53 O
TER
Atoms:
OP1: (4.757,92.086,110.383)
OP2: (3.402,90.221,109.264)
C3': (0.172,93.380,111.264)
C1': (-0.974,94.092,109.343)
C5': (2.484,93.801,110.246)
O6: (-3.151,89.586,106.046)
O4': (0.398,94.450,109.195)
C8: (-0.306,91.921,108.214)
C2: (-4.576,92.502,107.478)
C6: (-3.201,90.638,106.684)
C5: (-2.153,91.303,107.361)
C4: (-2.422,92.486,108.011)
P: (3.759,91.656,109.372)
C4': (1.084,94.313,110.478)
C2': (-1.207,93.858,110.837)
O2': (-1.561,95.083,111.454)
N1: (-4.404,91.326,106.797)
N2: (-5.819,93.004,107.488)
N3: (-3.599,93.140,108.111)
N7: (-0.817,90.959,107.496)
N9: (-1.222,92.884,108.558)
O5': (2.435,92.508,109.619)
O3': (0.375,93.440,112.669)
OP2: (3.402,90.221,109.264)
C3': (0.172,93.380,111.264)
C1': (-0.974,94.092,109.343)
C5': (2.484,93.801,110.246)
O6: (-3.151,89.586,106.046)
O4': (0.398,94.450,109.195)
C8: (-0.306,91.921,108.214)
C2: (-4.576,92.502,107.478)
C6: (-3.201,90.638,106.684)
C5: (-2.153,91.303,107.361)
C4: (-2.422,92.486,108.011)
P: (3.759,91.656,109.372)
C4': (1.084,94.313,110.478)
C2': (-1.207,93.858,110.837)
O2': (-1.561,95.083,111.454)
N1: (-4.404,91.326,106.797)
N2: (-5.819,93.004,107.488)
N3: (-3.599,93.140,108.111)
N7: (-0.817,90.959,107.496)
N9: (-1.222,92.884,108.558)
O5': (2.435,92.508,109.619)
O3': (0.375,93.440,112.669)
C4: (-6.097,91.849,110.952)
N3: (-7.095,92.676,111.428)
OP1: (-8.588,88.974,104.371)
OP2: (-6.894,90.567,105.465)
C2: (-8.433,92.628,111.121)
C1': (-10.222,91.480,109.874)
C3': (-10.808,92.299,107.731)
O5': (-9.246,90.604,106.164)
O4': (-10.377,90.372,108.993)
C5': (-10.515,90.046,106.579)
P: (-8.083,89.687,105.579)
C4': (-11.047,90.802,107.778)
C2': (-10.864,92.698,109.200)
O2': (-12.178,92.844,109.687)
N1: (-8.795,91.618,110.233)
O4: (-4.935,92.026,111.327)
O2: (-9.231,93.423,111.598)
C6: (-7.838,90.759,109.719)
C5: (-6.542,90.839,110.041)
O3': (-11.781,92.949,106.928)
N3: (-7.095,92.676,111.428)
OP1: (-8.588,88.974,104.371)
OP2: (-6.894,90.567,105.465)
C2: (-8.433,92.628,111.121)
C1': (-10.222,91.480,109.874)
C3': (-10.808,92.299,107.731)
O5': (-9.246,90.604,106.164)
O4': (-10.377,90.372,108.993)
C5': (-10.515,90.046,106.579)
P: (-8.083,89.687,105.579)
C4': (-11.047,90.802,107.778)
C2': (-10.864,92.698,109.200)
O2': (-12.178,92.844,109.687)
N1: (-8.795,91.618,110.233)
O4: (-4.935,92.026,111.327)
O2: (-9.231,93.423,111.598)
C6: (-7.838,90.759,109.719)
C5: (-6.542,90.839,110.041)
O3': (-11.781,92.949,106.928)
Image (generated by PyMOL):