Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQK:0556:0577
Extra
PDB:
ATOM 1 O3' U A 555 4.313 92.218 108.030 1.00 40.94 O
ATOM 2 P G A 556 3.788 91.648 109.441 1.00 41.88 P
ATOM 3 OP1 G A 556 4.794 92.049 110.459 1.00 43.08 O
ATOM 4 OP2 G A 556 3.447 90.216 109.274 1.00 39.00 O
ATOM 5 O5' G A 556 2.460 92.475 109.723 1.00 41.36 O
ATOM 6 C5' G A 556 2.513 93.796 110.272 1.00 42.00 C
ATOM 7 C4' G A 556 1.114 94.301 110.520 1.00 46.98 C
ATOM 8 O4' G A 556 0.414 94.456 109.249 1.00 46.93 O
ATOM 9 C3' G A 556 0.216 93.353 111.301 1.00 48.15 C
ATOM 10 O3' G A 556 0.451 93.393 112.702 1.00 50.41 O
ATOM 11 C2' G A 556 -1.167 93.842 110.903 1.00 47.39 C
ATOM 12 O2' G A 556 -1.490 95.059 111.544 1.00 47.11 O
ATOM 13 C1' G A 556 -0.958 94.108 109.410 1.00 46.76 C
ATOM 14 N9 G A 556 -1.228 92.922 108.599 1.00 43.83 N
ATOM 15 C8 G A 556 -0.324 91.957 108.228 1.00 43.69 C
ATOM 16 N7 G A 556 -0.855 91.003 107.514 1.00 42.95 N
ATOM 17 C5 G A 556 -2.190 91.354 107.407 1.00 41.96 C
ATOM 18 C6 G A 556 -3.252 90.695 106.751 1.00 42.43 C
ATOM 19 O6 G A 556 -3.226 89.622 106.136 1.00 43.19 O
ATOM 20 N1 G A 556 -4.445 91.402 106.865 1.00 41.32 N
ATOM 21 C2 G A 556 -4.599 92.584 107.547 1.00 43.62 C
ATOM 22 N2 G A 556 -5.837 93.105 107.554 1.00 43.03 N
ATOM 23 N3 G A 556 -3.611 93.207 108.179 1.00 44.25 N
ATOM 24 C4 G A 556 -2.440 92.540 108.064 1.00 43.84 C
ATOM 25 P A A 557 -0.032 92.161 113.623 1.00 53.72 P
ATOM 26 OP1 A A 557 0.615 92.345 114.948 1.00 55.06 O
ATOM 27 OP2 A A 557 0.115 90.863 112.913 1.00 50.30 O
ATOM 28 O5' A A 557 -1.589 92.437 113.778 1.00 53.34 O
TER
ATOM 1 O3' G B 576 -7.800 88.698 106.872 1.00 60.86 O
ATOM 2 P U B 577 -8.037 89.773 105.691 1.00 60.97 P
ATOM 3 OP1 U B 577 -8.514 89.073 104.468 1.00 60.55 O
ATOM 4 OP2 U B 577 -6.833 90.639 105.617 1.00 63.16 O
ATOM 5 O5' U B 577 -9.208 90.694 106.254 1.00 60.28 O
ATOM 6 C5' U B 577 -10.494 90.143 106.617 1.00 59.43 C
ATOM 7 C4' U B 577 -11.034 90.847 107.843 1.00 58.96 C
ATOM 8 O4' U B 577 -10.368 90.369 109.043 1.00 59.07 O
ATOM 9 C3' U B 577 -10.808 92.345 107.857 1.00 58.59 C
ATOM 10 O3' U B 577 -11.783 93.019 107.073 1.00 60.59 O
ATOM 11 C2' U B 577 -10.867 92.680 109.344 1.00 58.32 C
ATOM 12 O2' U B 577 -12.183 92.794 109.836 1.00 58.31 O
ATOM 13 C1' U B 577 -10.215 91.441 109.968 1.00 58.13 C
ATOM 14 N1 U B 577 -8.787 91.571 110.323 1.00 57.43 N
ATOM 15 C2 U B 577 -8.410 92.588 111.198 1.00 57.41 C
ATOM 16 O2 U B 577 -9.197 93.395 111.673 1.00 56.73 O
ATOM 17 N3 U B 577 -7.068 92.625 111.496 1.00 57.85 N
ATOM 18 C4 U B 577 -6.080 91.782 111.022 1.00 58.34 C
ATOM 19 O4 U B 577 -4.915 91.951 111.387 1.00 58.62 O
ATOM 20 C5 U B 577 -6.540 90.767 110.125 1.00 56.90 C
ATOM 21 C6 U B 577 -7.839 90.698 109.811 1.00 57.54 C
ATOM 22 P A B 578 -11.374 94.347 106.268 1.00 62.92 P
ATOM 23 OP1 A B 578 -12.547 94.839 105.502 1.00 64.46 O
ATOM 24 OP2 A B 578 -10.095 94.090 105.560 1.00 63.46 O
ATOM 25 O5' A B 578 -11.092 95.399 107.423 1.00 60.56 O
TER
ATOM 2 P G A 556 3.788 91.648 109.441 1.00 41.88 P
ATOM 3 OP1 G A 556 4.794 92.049 110.459 1.00 43.08 O
ATOM 4 OP2 G A 556 3.447 90.216 109.274 1.00 39.00 O
ATOM 5 O5' G A 556 2.460 92.475 109.723 1.00 41.36 O
ATOM 6 C5' G A 556 2.513 93.796 110.272 1.00 42.00 C
ATOM 7 C4' G A 556 1.114 94.301 110.520 1.00 46.98 C
ATOM 8 O4' G A 556 0.414 94.456 109.249 1.00 46.93 O
ATOM 9 C3' G A 556 0.216 93.353 111.301 1.00 48.15 C
ATOM 10 O3' G A 556 0.451 93.393 112.702 1.00 50.41 O
ATOM 11 C2' G A 556 -1.167 93.842 110.903 1.00 47.39 C
ATOM 12 O2' G A 556 -1.490 95.059 111.544 1.00 47.11 O
ATOM 13 C1' G A 556 -0.958 94.108 109.410 1.00 46.76 C
ATOM 14 N9 G A 556 -1.228 92.922 108.599 1.00 43.83 N
ATOM 15 C8 G A 556 -0.324 91.957 108.228 1.00 43.69 C
ATOM 16 N7 G A 556 -0.855 91.003 107.514 1.00 42.95 N
ATOM 17 C5 G A 556 -2.190 91.354 107.407 1.00 41.96 C
ATOM 18 C6 G A 556 -3.252 90.695 106.751 1.00 42.43 C
ATOM 19 O6 G A 556 -3.226 89.622 106.136 1.00 43.19 O
ATOM 20 N1 G A 556 -4.445 91.402 106.865 1.00 41.32 N
ATOM 21 C2 G A 556 -4.599 92.584 107.547 1.00 43.62 C
ATOM 22 N2 G A 556 -5.837 93.105 107.554 1.00 43.03 N
ATOM 23 N3 G A 556 -3.611 93.207 108.179 1.00 44.25 N
ATOM 24 C4 G A 556 -2.440 92.540 108.064 1.00 43.84 C
ATOM 25 P A A 557 -0.032 92.161 113.623 1.00 53.72 P
ATOM 26 OP1 A A 557 0.615 92.345 114.948 1.00 55.06 O
ATOM 27 OP2 A A 557 0.115 90.863 112.913 1.00 50.30 O
ATOM 28 O5' A A 557 -1.589 92.437 113.778 1.00 53.34 O
TER
ATOM 1 O3' G B 576 -7.800 88.698 106.872 1.00 60.86 O
ATOM 2 P U B 577 -8.037 89.773 105.691 1.00 60.97 P
ATOM 3 OP1 U B 577 -8.514 89.073 104.468 1.00 60.55 O
ATOM 4 OP2 U B 577 -6.833 90.639 105.617 1.00 63.16 O
ATOM 5 O5' U B 577 -9.208 90.694 106.254 1.00 60.28 O
ATOM 6 C5' U B 577 -10.494 90.143 106.617 1.00 59.43 C
ATOM 7 C4' U B 577 -11.034 90.847 107.843 1.00 58.96 C
ATOM 8 O4' U B 577 -10.368 90.369 109.043 1.00 59.07 O
ATOM 9 C3' U B 577 -10.808 92.345 107.857 1.00 58.59 C
ATOM 10 O3' U B 577 -11.783 93.019 107.073 1.00 60.59 O
ATOM 11 C2' U B 577 -10.867 92.680 109.344 1.00 58.32 C
ATOM 12 O2' U B 577 -12.183 92.794 109.836 1.00 58.31 O
ATOM 13 C1' U B 577 -10.215 91.441 109.968 1.00 58.13 C
ATOM 14 N1 U B 577 -8.787 91.571 110.323 1.00 57.43 N
ATOM 15 C2 U B 577 -8.410 92.588 111.198 1.00 57.41 C
ATOM 16 O2 U B 577 -9.197 93.395 111.673 1.00 56.73 O
ATOM 17 N3 U B 577 -7.068 92.625 111.496 1.00 57.85 N
ATOM 18 C4 U B 577 -6.080 91.782 111.022 1.00 58.34 C
ATOM 19 O4 U B 577 -4.915 91.951 111.387 1.00 58.62 O
ATOM 20 C5 U B 577 -6.540 90.767 110.125 1.00 56.90 C
ATOM 21 C6 U B 577 -7.839 90.698 109.811 1.00 57.54 C
ATOM 22 P A B 578 -11.374 94.347 106.268 1.00 62.92 P
ATOM 23 OP1 A B 578 -12.547 94.839 105.502 1.00 64.46 O
ATOM 24 OP2 A B 578 -10.095 94.090 105.560 1.00 63.46 O
ATOM 25 O5' A B 578 -11.092 95.399 107.423 1.00 60.56 O
TER
Atoms:
OP1: (4.794,92.049,110.459)
OP2: (3.447,90.216,109.274)
C3': (0.216,93.353,111.301)
C1': (-0.958,94.108,109.410)
C5': (2.513,93.796,110.272)
O6: (-3.226,89.622,106.136)
O4': (0.414,94.456,109.249)
C8: (-0.324,91.957,108.228)
C2: (-4.599,92.584,107.547)
C6: (-3.252,90.695,106.751)
C5: (-2.190,91.354,107.407)
C4: (-2.440,92.540,108.064)
P: (3.788,91.648,109.441)
C4': (1.114,94.301,110.520)
C2': (-1.167,93.842,110.903)
O2': (-1.490,95.059,111.544)
N1: (-4.445,91.402,106.865)
N2: (-5.837,93.105,107.554)
N3: (-3.611,93.207,108.179)
N7: (-0.855,91.003,107.514)
N9: (-1.228,92.922,108.599)
O5': (2.460,92.475,109.723)
O3': (0.451,93.393,112.702)
OP2: (3.447,90.216,109.274)
C3': (0.216,93.353,111.301)
C1': (-0.958,94.108,109.410)
C5': (2.513,93.796,110.272)
O6: (-3.226,89.622,106.136)
O4': (0.414,94.456,109.249)
C8: (-0.324,91.957,108.228)
C2: (-4.599,92.584,107.547)
C6: (-3.252,90.695,106.751)
C5: (-2.190,91.354,107.407)
C4: (-2.440,92.540,108.064)
P: (3.788,91.648,109.441)
C4': (1.114,94.301,110.520)
C2': (-1.167,93.842,110.903)
O2': (-1.490,95.059,111.544)
N1: (-4.445,91.402,106.865)
N2: (-5.837,93.105,107.554)
N3: (-3.611,93.207,108.179)
N7: (-0.855,91.003,107.514)
N9: (-1.228,92.922,108.599)
O5': (2.460,92.475,109.723)
O3': (0.451,93.393,112.702)
C4: (-6.080,91.782,111.022)
N3: (-7.068,92.625,111.496)
OP1: (-8.514,89.073,104.468)
OP2: (-6.833,90.639,105.617)
C2: (-8.410,92.588,111.198)
C1': (-10.215,91.441,109.968)
C3': (-10.808,92.345,107.857)
O5': (-9.208,90.694,106.254)
O4': (-10.368,90.369,109.043)
C5': (-10.494,90.143,106.617)
P: (-8.037,89.773,105.691)
C4': (-11.034,90.847,107.843)
C2': (-10.867,92.680,109.344)
O2': (-12.183,92.794,109.836)
N1: (-8.787,91.571,110.323)
O4: (-4.915,91.951,111.387)
O2: (-9.197,93.395,111.673)
C6: (-7.839,90.698,109.811)
C5: (-6.540,90.767,110.125)
O3': (-11.783,93.019,107.073)
N3: (-7.068,92.625,111.496)
OP1: (-8.514,89.073,104.468)
OP2: (-6.833,90.639,105.617)
C2: (-8.410,92.588,111.198)
C1': (-10.215,91.441,109.968)
C3': (-10.808,92.345,107.857)
O5': (-9.208,90.694,106.254)
O4': (-10.368,90.369,109.043)
C5': (-10.494,90.143,106.617)
P: (-8.037,89.773,105.691)
C4': (-11.034,90.847,107.843)
C2': (-10.867,92.680,109.344)
O2': (-12.183,92.794,109.836)
N1: (-8.787,91.571,110.323)
O4: (-4.915,91.951,111.387)
O2: (-9.197,93.395,111.673)
C6: (-7.839,90.698,109.811)
C5: (-6.540,90.767,110.125)
O3': (-11.783,93.019,107.073)
Image (generated by PyMOL):